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Introduction
Population projection analysis can be used to determine
the growth rate of a population. If the leading eigenvalue is
greater than 1, then the population is in a state of growth at
its equilibrium. If the leading eigenvalue is below 1, then the
population is in a state of decline.
I chose to focus my simulations on Panama palm trees
because:
• The seeds retain scars from predation events, such as claw
marks and emergence holes.
• Significant study of palms in Panama has given enough
characterization about their predators to create complex
simulations.
Population projection matrices rely on the assumption
that survivorship and fecundity values for a population can
be assumed to remain constant. This allows the age class
distribution of a species to come to an equilibrium value. The
growth rate that is observed is thus characterized as the
growth rate for a species when the species is in stage class
equilibrium
Specific Limitations working with tropical tree species:
• Age class Data is hard to come by for long-lived tropical
species because trees in tropical environments to not
produce seasonal growth rings.
• Stage Class matrixes must be calculated based on a size of
an individual
Modeling the Effect of Post-Dispersal Seed Predation on
Tropical Tree Species in Panama
Results
• The model reports that the larger fragment (III) is
more sensitive to predation than the smaller
Fragment (I). (Figure 2)
• Populations crash if the seed predators kill more
than 99% of the seeds
• Eigenvector Analysis shows that there is a 0.01%
difference in the composition of the adult
populations as a result of the different matrices
Future Projects
• Investigating the effect of adult tree density
on the level of predation by Bruchid Beetles
on BCI research station.
• Investigate the effect of additional columns
on a population projection matrix model
• Use BCI time-series data to replicate these
analysis with Attalea butyracea using my
own age class matrix.
Figure 2 – Population Projection Model
Figure 3 – Goals for Future
Simulations of Tropical Spp.
Figure 1- Methods for Eigenvalue Calculations
Justin Tirrell
Utah State University
Biology
tirrelljustin95@gmail.com
Stage Class matrices are based off of the stage class model created by Souza and Martins f
Program created using R Statistical Software:
Using Discrete Space in future simulations
Abstract
Palm trees provide a unique opportunity to study what conditions optimize
the probability that a seed will grow successfully. The seeds of palm trees,
endocarps, are large and easy to locate. When they don't grow, predators
leave marks on them that tell the story of their fate. The focus of my
experiment is to determine how the current distribution pattern of parent
palm trees in Panama Palm trees affects the the future distribution of
seedlings. I have programmed a versatile model that takes the assumption
that bruchid beetles are the sole predators acting on the seeds, and that
these fall from the trees in an inverse logarithmic density pattern. The beetles
are programmed to move to a random seed within an arbitrary distance of
their start point. If no seeds are near enough to them, then they starve. I
hypothesize that the beetles will decrease clumping within five generations.
Justin Tirrell, Eric Sodja, Will Pearse, Noelle Beckman
Department of Biology, Utah State University.
Methods
• Simulations of Beetle Predation in R statistical
software
• Eigenvector & Eigenvalue analysis for Population
Projection matrices
• Assumptions of Population Projection Matrices
1. Survivorship and Fecundity values are held constant
2. Stage classes based on size can be used
3. Density-independence
User Interface: This simulation can take input from the user that describes the dynamics of the existing population.
Citations:
1. Wright, S. J. (1983). The Dispersion of Eggs by a Bruchid Beetle among Scheelea Palm Seeds and the Effect of Distance to the Parent Palm.
Ecology, 64(5), 1016–1021. https://doi.org/10.2307/1937808
2. Souza, A. F. & Martins, F. R. (2004). Population structure and dynamics of a neotropical palm in fire-impacted fragments of the Brazilian Atlantic Forest. Biodiversity and Conservation, 13: 1611-1632.
Retrieved from: https://www.researchgate.net/publication/227158775_Population_structure_and_dynamics_of_a_Neotropical_palm_in_fire-impacted_fragments_of_the_Brazilian_Atlantic_Forest.
Seed Seedling
Juvenile Immature
Virgin Reproductive
Fragment 1 Fragment 3
Survivorship 0.01% 1% 0.01% 1%
Seed 98.03% 95.50% 99.61% 96.65%
Seedling 0.05% 2.48% 0.03% 1.62%
Juvenile 0.01% 0.39% ~0.00% 0.08%
Immature 0.24% 0.61% 0.22% 1.47%
Virgin 1.52% 0.85% ~0.00% ~0.00%
Reproductive 0.15% 0.17% 0.14% 0.17%

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Fall18 SRS

  • 1. Introduction Population projection analysis can be used to determine the growth rate of a population. If the leading eigenvalue is greater than 1, then the population is in a state of growth at its equilibrium. If the leading eigenvalue is below 1, then the population is in a state of decline. I chose to focus my simulations on Panama palm trees because: • The seeds retain scars from predation events, such as claw marks and emergence holes. • Significant study of palms in Panama has given enough characterization about their predators to create complex simulations. Population projection matrices rely on the assumption that survivorship and fecundity values for a population can be assumed to remain constant. This allows the age class distribution of a species to come to an equilibrium value. The growth rate that is observed is thus characterized as the growth rate for a species when the species is in stage class equilibrium Specific Limitations working with tropical tree species: • Age class Data is hard to come by for long-lived tropical species because trees in tropical environments to not produce seasonal growth rings. • Stage Class matrixes must be calculated based on a size of an individual Modeling the Effect of Post-Dispersal Seed Predation on Tropical Tree Species in Panama Results • The model reports that the larger fragment (III) is more sensitive to predation than the smaller Fragment (I). (Figure 2) • Populations crash if the seed predators kill more than 99% of the seeds • Eigenvector Analysis shows that there is a 0.01% difference in the composition of the adult populations as a result of the different matrices Future Projects • Investigating the effect of adult tree density on the level of predation by Bruchid Beetles on BCI research station. • Investigate the effect of additional columns on a population projection matrix model • Use BCI time-series data to replicate these analysis with Attalea butyracea using my own age class matrix. Figure 2 – Population Projection Model Figure 3 – Goals for Future Simulations of Tropical Spp. Figure 1- Methods for Eigenvalue Calculations Justin Tirrell Utah State University Biology tirrelljustin95@gmail.com Stage Class matrices are based off of the stage class model created by Souza and Martins f Program created using R Statistical Software: Using Discrete Space in future simulations Abstract Palm trees provide a unique opportunity to study what conditions optimize the probability that a seed will grow successfully. The seeds of palm trees, endocarps, are large and easy to locate. When they don't grow, predators leave marks on them that tell the story of their fate. The focus of my experiment is to determine how the current distribution pattern of parent palm trees in Panama Palm trees affects the the future distribution of seedlings. I have programmed a versatile model that takes the assumption that bruchid beetles are the sole predators acting on the seeds, and that these fall from the trees in an inverse logarithmic density pattern. The beetles are programmed to move to a random seed within an arbitrary distance of their start point. If no seeds are near enough to them, then they starve. I hypothesize that the beetles will decrease clumping within five generations. Justin Tirrell, Eric Sodja, Will Pearse, Noelle Beckman Department of Biology, Utah State University. Methods • Simulations of Beetle Predation in R statistical software • Eigenvector & Eigenvalue analysis for Population Projection matrices • Assumptions of Population Projection Matrices 1. Survivorship and Fecundity values are held constant 2. Stage classes based on size can be used 3. Density-independence User Interface: This simulation can take input from the user that describes the dynamics of the existing population. Citations: 1. Wright, S. J. (1983). The Dispersion of Eggs by a Bruchid Beetle among Scheelea Palm Seeds and the Effect of Distance to the Parent Palm. Ecology, 64(5), 1016–1021. https://doi.org/10.2307/1937808 2. Souza, A. F. & Martins, F. R. (2004). Population structure and dynamics of a neotropical palm in fire-impacted fragments of the Brazilian Atlantic Forest. Biodiversity and Conservation, 13: 1611-1632. Retrieved from: https://www.researchgate.net/publication/227158775_Population_structure_and_dynamics_of_a_Neotropical_palm_in_fire-impacted_fragments_of_the_Brazilian_Atlantic_Forest. Seed Seedling Juvenile Immature Virgin Reproductive Fragment 1 Fragment 3 Survivorship 0.01% 1% 0.01% 1% Seed 98.03% 95.50% 99.61% 96.65% Seedling 0.05% 2.48% 0.03% 1.62% Juvenile 0.01% 0.39% ~0.00% 0.08% Immature 0.24% 0.61% 0.22% 1.47% Virgin 1.52% 0.85% ~0.00% ~0.00% Reproductive 0.15% 0.17% 0.14% 0.17%