1. Prokaryotes have one circular chromosome without histone proteins, while eukaryotes have multiple linear chromosomes associated with histone proteins. 2. Some prokaryotes also contain plasmids, which are extra DNA molecules that can be transferred between cells and species. 3. Eukaryotic cells can be haploid, containing one of each type of chromosome, or diploid, containing two of each type of homologous chromosome. The number and type of chromosomes is characteristic of each species.