This document summarizes a talk on genome evolution from the base pair level to the planetary level over billions of years. It discusses domestication of plants and animals, challenges in domesticating new species, and opportunities for improving crops through genetics, breeding, and introducing genes from wild relatives. It also addresses feeding a growing global population sustainably into the future.
Plenary Talk “The banana pangenome, evolution, and exploiting biodiversity“ Pat Heslop-Harrison phh@molcyt.com for Malaysian National Banana Congress 2021
Banana production faces challenges from biotic (disease) and abiotic (environment) stresses.
New genetic characteristics are needed for stress resistance and to improve yield, agronomy, post-harvest quality, nutritional value, and even for new food or industrial uses.
Improvement requires i) identification of the challenge; ii) identification of useful genetic variants; iii) potentially bringing together useful variants in a single plant; iv) testing of characteristics of a new variety; and v) propagation and planting.
I will discuss our results measuring diversity in germplasm from banana and its sister species including the starchy Ensete, towards generating a pan-genome representing the entire genetic diversity within the Musaceae family.
I will consider how this diversity has evolved and how we might use it as a common gene pool to improve banana for the benefit of smallholder or commercial farmers, and for the sustainability in the environment.
This document discusses biodiversity and domestication of plants. It provides an overview of an international webinar on this topic presented by Pat Heslop-Harrison. The webinar covered challenges related to biodiversity loss and feeding the global population, and proposed that harnessing genetic diversity through plant breeding and management can help address these issues. Examples of crop domestication and genetic resources in plants like wheat, banana, and saffron were also presented.
This document provides information about biodiversity and domesticated species. It discusses what biodiversity is, examples of domesticated species, when and where domestication started, and the biological changes that occurred during domestication. The document also addresses inputs and outputs of ecosystems and threats to sustainability. It provides examples of plant and animal domestication and discusses the first steps in the domestication process.
Comparative genomic analysis in Zingiberales: what can we learn from banana to enable Ensete and Boesenbergia to reach their potential?
Talk for Plant and Animal Genomics XXV 25 - San Diego January 2017
Trude Schwarzacher, Jennifer A. Harikrishna and Pat Heslop-Harrison, University of Leicester and University of Malaya
phh(a)molcyt.com
Within the Zingiberales there are many orphan crops that are grown in Africa and Asia where recently started genomic efforts will have an impact for the future understanding and breeding of these crops. Advanced genomics and genome knowledge of the taxonomically closely related genus Musa will help identify genes and their function. We will discuss relevant recent work with Musa and results from DNA sequencing, examinations of diversity and studies of genome structure, gene expression and epigenetic control in Boesenbergia and ensete. Ensete is an important starch staple food in Ethiopia. It is harvested just as the monocarpic plant starts to flower, a few years after planting, and the stored starch extracted from the pseudo-stem and corm. A genome sequence has been published, but there is little genomics. Characterization of the diversity in the species and understanding of the differences to Musa will enable selection and breeding for crop improvement to meet the requirements of increasing populations, climate change and environmental sustainability. Boesenbergia rotunda is widely used in traditional medicine in Asia and has been shown to produce secondary metabolites with antiviral activity. For high throughput propagation and metabolite production in vitro culture is employed; embryogenic calli of B. rotunda in vitro are able to regenerate into plants but lose this ability after prolonged periods in cell suspension media. Epigenetic factors, including histone modifications and DNA methylation are likely to play crucial roles in the regulation of genes involved in totipotency and plant regeneration. These findings are also relevant to other crops within the Zingiberales. Further details will be given at www.molcyt.com
Chromosomes, Crops and Superdomestication - Pat Heslop-Harrison MalaysiaPat (JS) Heslop-Harrison
PUBLIC SEMINAR At Agro-Biotechnology Institute, ABI Serdang
Prof J. S. “Pat” Heslop-Harrison,
University of Leicester
Academic Icon, University of Malaya
Chromosomes, Crops and Superdomestication
Crop improvement is reliant on the exploitation of new biodiversity and new combinations of diversity. I will discuss our work on genome structure and evolution, involving processes including polyploidy, introgression, recombination and repetitive DNA changes. Identification and measurement of diversity and relationships assists in use of new gene combinations or new crops, through synthesizing new hybrid species, by chromosome engineering or by transgenic strategies. We are studying crops including wheat, Brassica and banana, using genome sequencing, repetitive sequence comparison, and cytogenetics. Plants, pathogens and farmers have been involved in a three-way fight since the start of agriculture, and the concept of superdomestication involves systematic identification of needs from crops, only then followed by finding appropriate characters and bringing them together in new varieties. Crops will continue to deliver the products needed for food, fibre, fuel and fibre in an increasingly sustainable and safe manner.
1) The document discusses domestication syndrome in crop plants, which refers to the suite of traits that distinguish domesticated crops from their wild progenitors, such as larger fruits/grains, loss of seed dispersal mechanisms, and changes to growth patterns.
2) Domestication occurred as humans selectively bred wild plants starting around 12,000 years ago during the Neolithic Revolution, resulting in crops dependent on human cultivation. Artificial selection for desirable traits changed plant evolution, similar to natural selection.
3) Methods to identify genes responsible for domestication traits include QTL mapping, association studies, and screening for signatures of selection in resequenced genomes. Several genes controlling key domestication traits have been identified in crops
This presentation discusses the history and process of plant domestication. It begins with an overview of the origins and timeline of agriculture, noting that domestication of major crops like rice, wheat and maize was completed by 4000 BC. The presentation then covers centers of domestication, key domestication traits, genes controlling traits, and modern techniques like genome sequencing, GWAS, and NGS that are helping to further understand domestication.
Presentation delivered by Dr. Ian King (University of Nottingham, UK) at Borlaug Summit on Wheat for Food Security. March 25 - 28, 2014, Ciudad Obregon, Mexico.
http://www.borlaug100.org
Plenary Talk “The banana pangenome, evolution, and exploiting biodiversity“ Pat Heslop-Harrison phh@molcyt.com for Malaysian National Banana Congress 2021
Banana production faces challenges from biotic (disease) and abiotic (environment) stresses.
New genetic characteristics are needed for stress resistance and to improve yield, agronomy, post-harvest quality, nutritional value, and even for new food or industrial uses.
Improvement requires i) identification of the challenge; ii) identification of useful genetic variants; iii) potentially bringing together useful variants in a single plant; iv) testing of characteristics of a new variety; and v) propagation and planting.
I will discuss our results measuring diversity in germplasm from banana and its sister species including the starchy Ensete, towards generating a pan-genome representing the entire genetic diversity within the Musaceae family.
I will consider how this diversity has evolved and how we might use it as a common gene pool to improve banana for the benefit of smallholder or commercial farmers, and for the sustainability in the environment.
This document discusses biodiversity and domestication of plants. It provides an overview of an international webinar on this topic presented by Pat Heslop-Harrison. The webinar covered challenges related to biodiversity loss and feeding the global population, and proposed that harnessing genetic diversity through plant breeding and management can help address these issues. Examples of crop domestication and genetic resources in plants like wheat, banana, and saffron were also presented.
This document provides information about biodiversity and domesticated species. It discusses what biodiversity is, examples of domesticated species, when and where domestication started, and the biological changes that occurred during domestication. The document also addresses inputs and outputs of ecosystems and threats to sustainability. It provides examples of plant and animal domestication and discusses the first steps in the domestication process.
Comparative genomic analysis in Zingiberales: what can we learn from banana to enable Ensete and Boesenbergia to reach their potential?
Talk for Plant and Animal Genomics XXV 25 - San Diego January 2017
Trude Schwarzacher, Jennifer A. Harikrishna and Pat Heslop-Harrison, University of Leicester and University of Malaya
phh(a)molcyt.com
Within the Zingiberales there are many orphan crops that are grown in Africa and Asia where recently started genomic efforts will have an impact for the future understanding and breeding of these crops. Advanced genomics and genome knowledge of the taxonomically closely related genus Musa will help identify genes and their function. We will discuss relevant recent work with Musa and results from DNA sequencing, examinations of diversity and studies of genome structure, gene expression and epigenetic control in Boesenbergia and ensete. Ensete is an important starch staple food in Ethiopia. It is harvested just as the monocarpic plant starts to flower, a few years after planting, and the stored starch extracted from the pseudo-stem and corm. A genome sequence has been published, but there is little genomics. Characterization of the diversity in the species and understanding of the differences to Musa will enable selection and breeding for crop improvement to meet the requirements of increasing populations, climate change and environmental sustainability. Boesenbergia rotunda is widely used in traditional medicine in Asia and has been shown to produce secondary metabolites with antiviral activity. For high throughput propagation and metabolite production in vitro culture is employed; embryogenic calli of B. rotunda in vitro are able to regenerate into plants but lose this ability after prolonged periods in cell suspension media. Epigenetic factors, including histone modifications and DNA methylation are likely to play crucial roles in the regulation of genes involved in totipotency and plant regeneration. These findings are also relevant to other crops within the Zingiberales. Further details will be given at www.molcyt.com
Chromosomes, Crops and Superdomestication - Pat Heslop-Harrison MalaysiaPat (JS) Heslop-Harrison
PUBLIC SEMINAR At Agro-Biotechnology Institute, ABI Serdang
Prof J. S. “Pat” Heslop-Harrison,
University of Leicester
Academic Icon, University of Malaya
Chromosomes, Crops and Superdomestication
Crop improvement is reliant on the exploitation of new biodiversity and new combinations of diversity. I will discuss our work on genome structure and evolution, involving processes including polyploidy, introgression, recombination and repetitive DNA changes. Identification and measurement of diversity and relationships assists in use of new gene combinations or new crops, through synthesizing new hybrid species, by chromosome engineering or by transgenic strategies. We are studying crops including wheat, Brassica and banana, using genome sequencing, repetitive sequence comparison, and cytogenetics. Plants, pathogens and farmers have been involved in a three-way fight since the start of agriculture, and the concept of superdomestication involves systematic identification of needs from crops, only then followed by finding appropriate characters and bringing them together in new varieties. Crops will continue to deliver the products needed for food, fibre, fuel and fibre in an increasingly sustainable and safe manner.
1) The document discusses domestication syndrome in crop plants, which refers to the suite of traits that distinguish domesticated crops from their wild progenitors, such as larger fruits/grains, loss of seed dispersal mechanisms, and changes to growth patterns.
2) Domestication occurred as humans selectively bred wild plants starting around 12,000 years ago during the Neolithic Revolution, resulting in crops dependent on human cultivation. Artificial selection for desirable traits changed plant evolution, similar to natural selection.
3) Methods to identify genes responsible for domestication traits include QTL mapping, association studies, and screening for signatures of selection in resequenced genomes. Several genes controlling key domestication traits have been identified in crops
This presentation discusses the history and process of plant domestication. It begins with an overview of the origins and timeline of agriculture, noting that domestication of major crops like rice, wheat and maize was completed by 4000 BC. The presentation then covers centers of domestication, key domestication traits, genes controlling traits, and modern techniques like genome sequencing, GWAS, and NGS that are helping to further understand domestication.
Presentation delivered by Dr. Ian King (University of Nottingham, UK) at Borlaug Summit on Wheat for Food Security. March 25 - 28, 2014, Ciudad Obregon, Mexico.
http://www.borlaug100.org
Mobilizing wheat gene bank variation to breeding pipelinePrashant Vikram
This document discusses genetic approaches for mobilizing gene bank resources to enhance wheat productivity. It outlines a roadmap including: 1) evaluating wheat gene banks for traits like heat tolerance, rust resistance, and zinc content; 2) developing genomic resources through association mapping and bi-parental mapping; 3) utilizing resources through pre-breeding to develop improved lines; and 4) moving materials to national agricultural research systems breeding pipelines. It highlights efforts to profile and utilize diversity from Mexican landraces, including identifying rare alleles, developing a core set, and genome-wide association studies for heat tolerance.
integrated approach to tree domestication and conservation of genetic resources World Agroforestry (ICRAF)
1) The document discusses strategies for domesticating and conserving tree genetic resources using Milicia sp. as a case study, including field screening, vegetative propagation, molecular marker analysis, and seed orchard management.
2) Milicia sp. trees in Ghana were facing threats from pests, leading to large losses in timber production. The study screened accessions for pest resistance and used techniques like grafting and tissue culture to propagate resistant genotypes.
3) Genetic analysis using molecular markers found high genetic variation between populations that needs to be conserved to maintain the species. Seed orchard management techniques like clone deployment and controlling pollen contamination were also discussed.
The document discusses the importance of crop wild relatives (CWR) for adapting crops to climate change and other threats. It notes that CWR cover half the Earth's land and have provided genes for disease resistance and other traits. However, CWR populations are threatened by climate change and land use changes. The Global Crop Diversity Trust's CWR initiative aims to collect, conserve and use CWR diversity for climate change adaptation. It discusses challenges like identifying useful traits in wild species and removing undesirable linkages when introducing genes into crops. Genomics approaches may help address these challenges by discovering cryptic variation in CWR.
The document summarizes research on the process of domestication in plants. It discusses how domestication began around 10,000 years ago in the Fertile Crescent region and led to the development of agriculture. Key traits selected for during domestication included larger fruit and seed sizes, loss of natural seed dispersal and shattering, and reduced branching, known as the domestication syndrome. The document then focuses on genes related to domestication syndrome that have been identified in tomato, including those related to fruit shape and size. It also discusses genes responsible for preventing seed shattering, finding many of the same genes have been conserved across different domesticated cereal crops.
This document discusses the concept of a gene pool. It begins by defining the gene pool as the set of all genes in a population, usually of a particular species. It then provides a brief history of the term and how it was formulated by geneticists in the 1920s. The document goes on to explain the rational behind the gene pool concept, including how genetic diversity within a population allows for greater adaptability. It then discusses how the gene pool concept is applied to crop breeding, dividing plant materials into primary, secondary, and tertiary gene pools based on their genetic relationship and the ease of gene transfer. Key aspects of each gene pool type are outlined. The document concludes by discussing gene pool centers and the importance of studying the gene
The document summarizes the genetic basis of crop domestication. It discusses how early farmers unconsciously selected traits from wild plants like larger seeds and loss of seed dispersal, forming the domestication syndrome. This selection through bottlenecks and selective sweeps reduced genetic diversity in crops compared to their wild ancestors. Various approaches are described to identify genes underlying domesticated traits, like QTL mapping, association studies, and selection scans of genomes. Two case studies on soybean and sunflower domestication are presented, finding genes related to traits like shattering and oil content experienced strong selection. Understanding domestication genetics can aid future crop improvement efforts.
Poster describing a global occurrence database of over 5 million records of the distributions of crops and their wild relatives, including taxonomic and geographic information.
Lecture 3 -the diversity of genomes and the tree of lifeEmmanuel Aguon
Dolly the sheep was the first mammal to be cloned from an adult somatic cell, demonstrating that differentiated cells could be reprogrammed to pluripotency. Prior to Dolly, all cloning had involved embryonic cells or cells that had not yet differentiated. Dolly showed that the cell specialization process could be reversed, proving the possibility of therapeutic cloning and stem cell research using somatic cell nuclear transfer techniques. Her successful cloning from an adult cell was a major scientific breakthrough.
Resource use efficiency in fish: Application of biotechnology in genetic imp...ExternalEvents
Resource use efficiency in fish: Application of biotechnology in genetic improvement in tropical aquaculture presentation by David Penman, University of Stirling, Stirling, United Kingdom
Practical application of advanced molecular techniques in the improvement of ...ILRI
Presented by Tadelle Dessie, Mengistie Taye, Adebabay Kebede, Kefena Effa, Zewdu Edea and Wondmeneh Esatu at the 27 Annual Conference of the Ethiopian Society of Animal Production (ESAP), EIAR, Addis Ababa, 29–31 August 2019
Ex situ conservation of poultry genetic resourceskanaka K K
Conservation of poultry genetic resources is important to maintain genetic diversity and long-term sustainability of the poultry industry. Both in situ and ex situ conservation methods can be used. Ex situ methods like cryopreservation of sperm, gonads, and primordial germ cells are promising as they allow for indefinite storage without deterioration. Sperm can be cryopreserved using appropriate extenders and slow freezing or vitrification. Oocytes and embryos cannot be cryopreserved due to attachment to yolk. Gonads can be vitrified and transplanted after thawing. Primordial germ cells isolated from blood vessels can be cryopreserved and used to recreate genetic lines after transplantation into sterile recipients. These ex situ
Hybridization refers to breeding between different species or genera of fish. It commonly occurs naturally in fish since they release eggs and sperm into water, allowing for external fertilization. This has led to many natural hybrids being found among closely related fish families that live in the same habitats. Artificial hybridization is also used in aquaculture to combine desirable traits from parent species. Outcomes can be diploid or triploid hybrids with intermediate characteristics.
B4FA 2012 Tanzania: Genetics, plant breeding and agriculture - Tina Barsbyb4fa
Presentation at the November 2012 dialogue workshop of the Biosciences for Farming in Africa media fellowship programme in Arusha, Tanzania.
Please see www.b4fa.org for more information
This document summarizes a credit seminar on plant genetic resource management and future strategies in fruit crops. It discusses plant genetic resources, including landraces, obsolete cultivars, modern cultivars, wild forms, wild relatives, and mutants. It describes gene pools and types of seed collection for conservation. India is highlighted as one of the most biodiverse countries with centers of origin for crop plants. The document outlines genetic resource management activities and provides statistics on genetic resource collections for various horticultural crops in India. Future needs are discussed like increasing in situ conservation and meeting demand for nutrition. Case studies demonstrate in vitro preservation and cryopreservation methods for conserving grapevine genetic resources. The conclusion emphasizes the importance of genetic diversity and
This document discusses the process of plant domestication. It begins by defining domestication and explaining how early humans selected traits like large plant parts and thick flesh in domesticated food plants. It then provides details on the benefits of domestication, the five levels of domestication, and the domestication syndrome. The document also examines outstanding questions in domestication research and insights from archeological and genetic studies. Specifically, it notes how domestication traits are influenced by a small number of regulatory genes and allows for rapid evolution.
Presentation made by Andy Jarvis in the Latin American Congress of Chemistry on 30th September 2010, in the symposium on Biodiversity and Ecosystems: the role of the chemical sciences.
Gene introgression from wild relatives to cultivated plantsManjappa Ganiger
This document summarizes a seminar on using crop wild relatives to introduce beneficial genes into cultivated crops. It discusses how crop wild relatives contain genetic diversity that can provide traits like pest and disease resistance, abiotic stress tolerance, and improved yields. Specific examples are given of introducing disease resistance genes from wild relatives into tomatoes and rust resistance genes into wheat. The use of wild rice species to develop rice varieties with improved resistance to various diseases and insects is also described.
Introduction to prebreeding component of CWR project CWR Project
This document summarizes a global initiative to collect, conserve, and utilize crop wild relatives to help adapt agriculture to climate change. It discusses the Global Crop Diversity Trust, which funds conservation of crop diversity collections. It also mentions the Svalbard Global Seed Vault and a 10-year project to collect wild relatives of 26 target crops in developing countries. The document outlines strategies for pre-breeding collected wild relatives with cultivated crops to transfer useful traits, especially drought and heat tolerance, and notes challenges like wildness of traits. It also summarizes an expert survey on priority species and traits for pre-breeding in the context of climate change.
conservation of poultry genetic resourceskanaka K K
The document discusses the conservation of poultry genetic resources. It defines poultry genetic resources and notes that chickens were domesticated around 5400 BC. It outlines some heritage poultry breeds in India that exist prior to 1950s and represent disease resistance and stress tolerance genes. The genetic diversity within poultry species is important to allow for future selection. Strategies for conservation include in situ conservation of live populations and ex situ conservation through cryopreservation and molecular techniques. Both phenotypic and genotypic characterization of breeds is important for conservation efforts.
B4FA 2012 Tanzania: Plant breeding and GM technology - Chris Leaverb4fa
Presentation at the November 2012 dialogue workshop of the Biosciences for Farming in Africa media fellowship programme in Arusha, Tanzania.
Please see www.b4fa.org for more information
Mobilizing wheat gene bank variation to breeding pipelinePrashant Vikram
This document discusses genetic approaches for mobilizing gene bank resources to enhance wheat productivity. It outlines a roadmap including: 1) evaluating wheat gene banks for traits like heat tolerance, rust resistance, and zinc content; 2) developing genomic resources through association mapping and bi-parental mapping; 3) utilizing resources through pre-breeding to develop improved lines; and 4) moving materials to national agricultural research systems breeding pipelines. It highlights efforts to profile and utilize diversity from Mexican landraces, including identifying rare alleles, developing a core set, and genome-wide association studies for heat tolerance.
integrated approach to tree domestication and conservation of genetic resources World Agroforestry (ICRAF)
1) The document discusses strategies for domesticating and conserving tree genetic resources using Milicia sp. as a case study, including field screening, vegetative propagation, molecular marker analysis, and seed orchard management.
2) Milicia sp. trees in Ghana were facing threats from pests, leading to large losses in timber production. The study screened accessions for pest resistance and used techniques like grafting and tissue culture to propagate resistant genotypes.
3) Genetic analysis using molecular markers found high genetic variation between populations that needs to be conserved to maintain the species. Seed orchard management techniques like clone deployment and controlling pollen contamination were also discussed.
The document discusses the importance of crop wild relatives (CWR) for adapting crops to climate change and other threats. It notes that CWR cover half the Earth's land and have provided genes for disease resistance and other traits. However, CWR populations are threatened by climate change and land use changes. The Global Crop Diversity Trust's CWR initiative aims to collect, conserve and use CWR diversity for climate change adaptation. It discusses challenges like identifying useful traits in wild species and removing undesirable linkages when introducing genes into crops. Genomics approaches may help address these challenges by discovering cryptic variation in CWR.
The document summarizes research on the process of domestication in plants. It discusses how domestication began around 10,000 years ago in the Fertile Crescent region and led to the development of agriculture. Key traits selected for during domestication included larger fruit and seed sizes, loss of natural seed dispersal and shattering, and reduced branching, known as the domestication syndrome. The document then focuses on genes related to domestication syndrome that have been identified in tomato, including those related to fruit shape and size. It also discusses genes responsible for preventing seed shattering, finding many of the same genes have been conserved across different domesticated cereal crops.
This document discusses the concept of a gene pool. It begins by defining the gene pool as the set of all genes in a population, usually of a particular species. It then provides a brief history of the term and how it was formulated by geneticists in the 1920s. The document goes on to explain the rational behind the gene pool concept, including how genetic diversity within a population allows for greater adaptability. It then discusses how the gene pool concept is applied to crop breeding, dividing plant materials into primary, secondary, and tertiary gene pools based on their genetic relationship and the ease of gene transfer. Key aspects of each gene pool type are outlined. The document concludes by discussing gene pool centers and the importance of studying the gene
The document summarizes the genetic basis of crop domestication. It discusses how early farmers unconsciously selected traits from wild plants like larger seeds and loss of seed dispersal, forming the domestication syndrome. This selection through bottlenecks and selective sweeps reduced genetic diversity in crops compared to their wild ancestors. Various approaches are described to identify genes underlying domesticated traits, like QTL mapping, association studies, and selection scans of genomes. Two case studies on soybean and sunflower domestication are presented, finding genes related to traits like shattering and oil content experienced strong selection. Understanding domestication genetics can aid future crop improvement efforts.
Poster describing a global occurrence database of over 5 million records of the distributions of crops and their wild relatives, including taxonomic and geographic information.
Lecture 3 -the diversity of genomes and the tree of lifeEmmanuel Aguon
Dolly the sheep was the first mammal to be cloned from an adult somatic cell, demonstrating that differentiated cells could be reprogrammed to pluripotency. Prior to Dolly, all cloning had involved embryonic cells or cells that had not yet differentiated. Dolly showed that the cell specialization process could be reversed, proving the possibility of therapeutic cloning and stem cell research using somatic cell nuclear transfer techniques. Her successful cloning from an adult cell was a major scientific breakthrough.
Resource use efficiency in fish: Application of biotechnology in genetic imp...ExternalEvents
Resource use efficiency in fish: Application of biotechnology in genetic improvement in tropical aquaculture presentation by David Penman, University of Stirling, Stirling, United Kingdom
Practical application of advanced molecular techniques in the improvement of ...ILRI
Presented by Tadelle Dessie, Mengistie Taye, Adebabay Kebede, Kefena Effa, Zewdu Edea and Wondmeneh Esatu at the 27 Annual Conference of the Ethiopian Society of Animal Production (ESAP), EIAR, Addis Ababa, 29–31 August 2019
Ex situ conservation of poultry genetic resourceskanaka K K
Conservation of poultry genetic resources is important to maintain genetic diversity and long-term sustainability of the poultry industry. Both in situ and ex situ conservation methods can be used. Ex situ methods like cryopreservation of sperm, gonads, and primordial germ cells are promising as they allow for indefinite storage without deterioration. Sperm can be cryopreserved using appropriate extenders and slow freezing or vitrification. Oocytes and embryos cannot be cryopreserved due to attachment to yolk. Gonads can be vitrified and transplanted after thawing. Primordial germ cells isolated from blood vessels can be cryopreserved and used to recreate genetic lines after transplantation into sterile recipients. These ex situ
Hybridization refers to breeding between different species or genera of fish. It commonly occurs naturally in fish since they release eggs and sperm into water, allowing for external fertilization. This has led to many natural hybrids being found among closely related fish families that live in the same habitats. Artificial hybridization is also used in aquaculture to combine desirable traits from parent species. Outcomes can be diploid or triploid hybrids with intermediate characteristics.
B4FA 2012 Tanzania: Genetics, plant breeding and agriculture - Tina Barsbyb4fa
Presentation at the November 2012 dialogue workshop of the Biosciences for Farming in Africa media fellowship programme in Arusha, Tanzania.
Please see www.b4fa.org for more information
This document summarizes a credit seminar on plant genetic resource management and future strategies in fruit crops. It discusses plant genetic resources, including landraces, obsolete cultivars, modern cultivars, wild forms, wild relatives, and mutants. It describes gene pools and types of seed collection for conservation. India is highlighted as one of the most biodiverse countries with centers of origin for crop plants. The document outlines genetic resource management activities and provides statistics on genetic resource collections for various horticultural crops in India. Future needs are discussed like increasing in situ conservation and meeting demand for nutrition. Case studies demonstrate in vitro preservation and cryopreservation methods for conserving grapevine genetic resources. The conclusion emphasizes the importance of genetic diversity and
This document discusses the process of plant domestication. It begins by defining domestication and explaining how early humans selected traits like large plant parts and thick flesh in domesticated food plants. It then provides details on the benefits of domestication, the five levels of domestication, and the domestication syndrome. The document also examines outstanding questions in domestication research and insights from archeological and genetic studies. Specifically, it notes how domestication traits are influenced by a small number of regulatory genes and allows for rapid evolution.
Presentation made by Andy Jarvis in the Latin American Congress of Chemistry on 30th September 2010, in the symposium on Biodiversity and Ecosystems: the role of the chemical sciences.
Gene introgression from wild relatives to cultivated plantsManjappa Ganiger
This document summarizes a seminar on using crop wild relatives to introduce beneficial genes into cultivated crops. It discusses how crop wild relatives contain genetic diversity that can provide traits like pest and disease resistance, abiotic stress tolerance, and improved yields. Specific examples are given of introducing disease resistance genes from wild relatives into tomatoes and rust resistance genes into wheat. The use of wild rice species to develop rice varieties with improved resistance to various diseases and insects is also described.
Introduction to prebreeding component of CWR project CWR Project
This document summarizes a global initiative to collect, conserve, and utilize crop wild relatives to help adapt agriculture to climate change. It discusses the Global Crop Diversity Trust, which funds conservation of crop diversity collections. It also mentions the Svalbard Global Seed Vault and a 10-year project to collect wild relatives of 26 target crops in developing countries. The document outlines strategies for pre-breeding collected wild relatives with cultivated crops to transfer useful traits, especially drought and heat tolerance, and notes challenges like wildness of traits. It also summarizes an expert survey on priority species and traits for pre-breeding in the context of climate change.
conservation of poultry genetic resourceskanaka K K
The document discusses the conservation of poultry genetic resources. It defines poultry genetic resources and notes that chickens were domesticated around 5400 BC. It outlines some heritage poultry breeds in India that exist prior to 1950s and represent disease resistance and stress tolerance genes. The genetic diversity within poultry species is important to allow for future selection. Strategies for conservation include in situ conservation of live populations and ex situ conservation through cryopreservation and molecular techniques. Both phenotypic and genotypic characterization of breeds is important for conservation efforts.
B4FA 2012 Tanzania: Plant breeding and GM technology - Chris Leaverb4fa
Presentation at the November 2012 dialogue workshop of the Biosciences for Farming in Africa media fellowship programme in Arusha, Tanzania.
Please see www.b4fa.org for more information
This document presents a report on crop domestication authored by three students. It discusses the key concepts of domestication including the genetic modification of wild plants by humans to meet their needs. Some major findings are summarized as follows:
- Crop domestication began as early as 11,000 BC with rye and progressed with grains like peas and wheat in the Middle East around 9000 BC. Major centers of early domestication included the Near East, China, Mesoamerica, and South America.
- Domestication results in morphological and physiological changes in plants through human selection over generations. Traits like seed shattering are reduced while fruit and seed size often increase.
- Pioneer scientists like De Cand
Crop domestication began as early as 11,000 BC with rye and continued with many important food crops like wheat, peas, and fruit trees in the following millennia. Key traits selected by early farmers included decreased plant size, loss of seed dormancy, and increased seed/fruit quality and quantity. Many major crops like corn, potatoes, and tomatoes have their origins in Central and South America but were dispersed and further domesticated worldwide. The integration of crops with new environments and the introduction of techniques like selection and breeding have led to dramatic increases in yield, quality, and other beneficial traits in crops over thousands of years of human intervention and cultivation.
Wilhelm Gruissem - Global Plant Council: A coalition of plant and crop societ...epsoeurope
Presentation from Wilhelm Gruissem, President of the Global Plant Council, at the 7th EPSO Conference, 2 Sept 2013.
"Global Plant Council: A coalition of plant and crop societies across the globe, Global needs and contributions from plant science"
This document discusses the importance of seed diversity for ensuring resilient and nutritious food production in the face of climate change. It outlines how agricultural biodiversity has declined dramatically due to the loss of traditional seed varieties and knowledge. However, reviving seed diversity through supporting local seed systems, networks, and farmers' rights is key to building climate resilience. The document presents case studies from countries taking innovative approaches to enhancing seed diversity and agriculture through collaboration with small-scale farmers.
The document outlines the five-kingdom classification system used to categorize Earth's biodiversity. It discusses the importance of maintaining biodiversity, including benefits such as ecosystem services, genetic resources, and economic benefits. The document also describes the major threats to biodiversity like habitat loss, invasive species, pollution, overharvesting, and climate change. It examines approaches to conservation like protected areas, international agreements, captive breeding programs, and community-based conservation efforts.
The document discusses planning for success with grass-fed beef operations. It covers selecting appropriate genetics for forage-based production, managing grazing through practices like rotational grazing and high stock density grazing, and building soil health through increasing soil organic matter and cultivating soil microbes. Maintaining soil health is key, as microbes drive many soil functions and high organic matter improves water retention, nutrient storage, and drought resilience. The document emphasizes building diverse, complex pastures through multispecies plantings and grazing management.
The document discusses the history of famines and public plant breeding efforts to address food shortages. It notes that the Irish Potato Famine triggered efforts to find new crop genes, and a 1943 conference resolved to achieve freedom from hunger. Major 20th century famines killed millions. The Green Revolution increased wheat and rice yields through new semi-dwarf varieties, but concerns about its environmental impacts led to the concept of an "Evergreen Revolution" integrating natural resource management. Achieving this will require harmonizing organic farming with new genetics to address challenges like climate change.
This document discusses crop genetic resources and genomic resources. It provides background on plant genetic resources, genetic diversity, genetic erosion, and conservation efforts. It then shifts to discussing genomic resources, including sequenced crop plant genomes and genomic tools. Examples of comparative and translational genomics are also presented. The document concludes with a case study on promoter analysis of the PDI gene in wheat and related species.
Management of intra and inter specific genetic diversityKangkan Kakati
This document discusses genetic diversity and its conservation. It defines genetic diversity as variation at the genetic level among organisms of a species. Genetic diversity is important for species continuity and adaptation. There are two main types of genetic diversity - intraspecific (within species) and interspecific (between species). Methods to conserve genetic diversity include ex-situ conservation methods like cryopreservation, seed banks, and tissue culture as well as in-situ conservation methods like biosphere reserves and sacred groves. Case studies demonstrate successful cryopreservation of sweet potato shoot tips and protection of genetic resources in sacred groves in India. The conclusion emphasizes that diverse plant genetic resources are valuable and their conservation is essential for present and future human well-
See text at http://molcyt.org/2012/11/29/superdomestication-feed-forward-breeding-and-climate-proofing-crops/ which also links the the YouTube talk using these slides
Zerihun Tadele
Institute of Plant Sciences
University of Bern
30 - 31 August 2018. Gent-Zwijnaarde, Belgium. IPBO conference 2018: “Scientific innovation for a sustainable development of African agriculture”
This document provides an overview of plant genetic resources. It discusses germplasm and its conservation, the concept of gene pools, centres of origin, and gene banks. It notes that germplasm includes landraces, obsolete varieties, varieties in cultivation, breeding lines, special genetic stocks, and wild forms and relatives. Germplasm conservation can be in situ or ex situ through seed banks, field gene banks, shoot-tip banks, and more. Key concepts discussed include Vavilov's centres of origin theory and Harlan and de Wet's gene pool classification. Important gene banks in India are also listed, including the role of NBPGR as the nodal agency.
Plant genetic resources their utilization and conservation in crop improvementNaveen Kumar
This document discusses plant genetic resources. It defines plant genetic resources as the genetic material in crop plants and their wild relatives. It notes that plant genetic resources include landraces, obsolete and modern cultivars, advanced breeding lines, wild relatives, and induced mutants. The document outlines the various components that make up plant genetic resources and strategies for conserving genetic resources both in and ex situ.
The document provides information about the domestication of crop plants, including:
- Domestication involves adapting wild plants for human use by selecting for desirable traits over generations.
- It began as early as 11,000 BC with rye and included major crops like wheat, peas, and bottle gourd in various regions including the Middle East, Asia, and Americas.
- Key scientists like de Candolle and Vavilov studied the origins and centers of domestication for many crops still important today. The process resulted in morphological and physiological changes collectively known as the domestication syndrome.
This document discusses the development of genetically modified crops, including the history of increasing maize yields in the US since 1875, the multi-billion dollar global market for seeds and traits, and the pipeline of biotech crops in development. It provides details on various genetic engineering techniques used to introduce traits into plants, such as particle bombardment, and the regulatory process for approving GM crops. Key points include increasing global adoption of biotech crops since 1996, their potential to reduce the yield gap in developing countries, and future prospects for high-value and "pharming" crops.
Plant breeding is the art and science of improving plant varieties. The key activities of plant breeding include creating variability, selecting elite varieties, evaluating varieties in trials, identifying superior varieties, multiplying seeds, and distributing new varieties. The objectives of plant breeding are to increase yield, improve quality, add resistances to stresses, and modify other agronomic traits. Plant breeding has progressed from the pre-Mendelian era of selection and hybridization to the modern era utilizing techniques like hybridization, mutation breeding, and genetic engineering.
Role of beneficial microbes in next green revolutionMehjebinRahman2
The document summarizes the keynote speech given by Miss Mehjebin Rahman on probing beneficial microbes for the next green revolution. It discusses how the green revolution significantly increased food production but led to various negative environmental consequences. It argues that the next green revolution needs a more sustainable approach, and that microbes have great potential to promote plant growth and stress resistance while maintaining sustainability. Several companies are developing microbial treatments to boost yields without synthetic fertilizers. The document outlines various plant growth promoting microbes and their mechanisms, such as nitrogen fixation, phosphate solubilization, and phytohormone production.
Similar to Domestication, Diversity and Molecular Cytogenetics Pat Heslop-Harrison (20)
An overview of some work on the DNA, genomes, chromosomes and genes in saffron crocus, Crocus sativus, from our lab, with mention of other work with whole genome assemblies from several countries, and analysis of repetitive DNA components by in situ hybridization.
Memorial lecture to University of Delhi HYM H.Y. Mohan Ram giving results about our molecular cytogenetics and cytogenomics research in University of Leicester and South China Botanical Garden
This document discusses diversity in linseed (flax) crops in Ethiopia. It finds high genetic diversity among Ethiopian linseed landraces in morphological traits, oil content and quality, and molecular markers. Traits like seed size, color, and oil content show variation. Molecular analysis clusters linseed species and some Ethiopian accessions by altitude and geographical region. The research aims to exploit this diversity through breeding to develop more sustainable and higher value linseed varieties meeting agricultural, economic and cultural needs. Work on linseed could help develop the crop for multiple uses like food, fiber, feed, and industry, benefiting smallholders and exports.
Saffron Crocus Genetics and Genomics - University of California Davis SeminarPat (JS) Heslop-Harrison
Saffron is the world's most expensive agricultural crop. Here I discuss challenges with the crop, discovery of its relatives, and possible approaches to crop improvement.
Ensete workshop with genomics data as part of GCRF BBSRC project lead by Royal Botanic Gardens Kew organized by Wolkite University, Addis Ababa Universities and others
Pat Heslop-Harrison presentation for International Chromosome Conference Prague September 2018 Meiosis, recombination, pairing, mitochondria, evolution, genomics, oligonucleotides, in situ hybridization, breeding, genetics, cytogenetics, ICC, ICC22
Polyploids and Chromosomes Lecture Japanese Genetics Society Heslop-Harrison ...Pat (JS) Heslop-Harrison
Polyploidy, its occurrence in plants, consequences and evolutionary significance. Lecture to Japanese Genetics Society, Okayama, September 2017. Covering wheat and its evolution
Genomics, mutation breeding and society - IAEA Coffee & Banana meeting - Schw...Pat (JS) Heslop-Harrison
i) The document discusses applying genomics tools and techniques like sequencing, mutation breeding, and tissue culture to assess genetic diversity in Ensete, conserve the Ensete gene pool, and support breeding. It aims to identify pathogens and soil biota, compare the Ensete genome to other species, and document and make information accessible.
ii) Genomics is revolutionizing the study of taxonomy, phylogeny, and diversity in crops. It enables exploiting biodiversity for breeding through tools like markers, mutation induction, and tissue culture.
iii) The research has impacts outside academia through legislation, breeding more sustainable varieties, sequencing whole genomes, risk assessment, and advising on biotechnology and food safety.
Infographic of activities of the molecular cytogenetics research group, Dept of Genetics, University Leicester, in December 2016. Work on genomics, genomes, chromosomes, evolution
This document discusses domestication, polyploidy, and genomics of crops and weeds. It notes that most major crop species were domesticated around 10,000 years ago, with a few more recently. Polyploidy, or whole genome duplication events, have also played an important role in crop evolution. The document examines genome sizes and components of various crop species, and notes that repetitive elements like transposons can make up large proportions of plant genomes. Differences in repetitive sequences between microspecies of dandelion are also discussed.
Chromosomes and molecular cytogenetics of oil palm: impact for breeding and g...Pat (JS) Heslop-Harrison
See also related talk Crops, Climate Change and Super-domestication Heslop-Harrison for Oil Palm Breeders symposium on Gearing Oil Palm Breeding and Agronomy for Climate Change: Keynote opening address MPOB PIPOC and PIPOC ISOPB ISOPA
http://www.slideshare.net/PatHeslopHarrison/heslop-harrisoncrops-climatechangesuperdomestication
Molecular cytogenetic analysis of the chromosomes of oil palm allows us to understand their evolution, genetics and segregation, genetic recombination and karyotypic stability. The cytogenetic manipulation of genomes and their chromosomes is often valuable for plant breeders to introduce and exploit new variation. Cytological landmarks such as centromeres, telomeres, heterochromatin and nucleolar organizer regions are important for the integration of physical chromosomes with the DNA sequence information. This linkage of the genetic, chromosomal and physical maps is particularly useful in a long-lived tree crop where genetic mapping requires decades of preparation and the mapping crosses may not be directly relevant to DxP commercial plantings. Repetitive DNA is often the most rapidly evolving genomic component, but is poorly understood from sequence assemblies; molecular cytogenetic studies allow its organization and variation to be studied, and the exploitation of repetitive sequences as markers and, by the amplification and mobility of transposable elements or satellite repeats, in generation of new variation.
Molecular cytogenetic approaches provide tools for oil palm genomic research, comparative genomics and evolutionary studies and further facilitate understanding the inheritance of specific traits in oil palm, including DNA methylation, epigenetics, and somaclonal variation, allowing work with hybrids, haploids and polyploids. Knowledge of the structures and organization of the chromosomes of oil palm, as in many crop species, is valuable for development of new lines, making hybrids, understanding the causes of some abnormalities or infertility, and exploiting variation and biodiversity found in related species or breeding lines.
Further information and slides from the talk will be on our website www.molcyt.com.
Trude Schwarzacher: #ECA2015 European Cytogenetics Conference plenary talk:15...Pat (JS) Heslop-Harrison
Gregor Mendel conducted experiments in the 1860s crossing different varieties of peas to study inheritance of traits. He observed that traits were passed down to offspring in predictable patterns, either dominantly or recessively. This work established foundations of genetics but was not widely recognized until the early 1900s. At the time of Mendel's work, cell structures like chromosomes were just beginning to be described microscopically, and their functions in heredity were not understood. Since Mendel, chromosome behavior during cell division has been shown to explain his laws of inheritance, and molecular genetics has revealed chromosomes contain genes on DNA that determine traits.
W071 Transposable Elements and Their Evolution in Musa
Date: Tuesday, January 13, 2015
Pat Heslop-Harrison, University of Leicester, United Kingdom
Gerhard Menzel, Universität Dresden, Germany
Tony Heitkam, Faisal Nouroz,Trude Schwarzacher, Thomas Schmidt
Like other plant species, DNA transposable elements and retrotransposons represent a large fraction of the Musa genome. Mobile elements can be identified 1) by homology to known elements; 2) by characteristic sequence properties such are repeats and short duplications; and 3) by studying their mobility and insertions/deletions in comparisons of homologous or homoeologous chromosome sequences. We have used all three approaches in Musa and I will show results showing the nature of unselected mobile sequences in Musa accessions. Many of the active elements proved to belong to the hAT family of DNA transposons, where there has been limited information on their diversity, abundance and chromosomal localization in plants. Chromosomal in situ hybridization, in silico analysis of genomic sequences, Southern hybridization and biodiversity panels were used to show three major families of the elements in Musa, with some 70 complete autonomous elements, and abundant hAT-related MITEs (Miniature inverted tandem elements).MuhAT transposons and MuhMITEs were localized in subtelomeric, most likely gene-rich regions, of chromosomes. Variation between homologous chromosomes and transduplications of genomic sequences indicate activity of the transposons and suggest a role for the MITEs in modulation of genomic behaviour.
Further details from www.molcyt.com;
hAt element analysis: Chromosome Research 2015 DOI 10.1007/s10577-014-9445-5.
In situ hybridization methods and techniques course slides Pat Heslop-HarrisonPat (JS) Heslop-Harrison
Methods and techniques for chromosomal in situ hybridization and molecular cytogenetics. Fixations, chromosomes preparation, mostly using plant chromosomes, hybridiziation mixtures, stringency calculations and fluorescent microscopy.Trude Schwarzacher and Pat Heslop-Harrison
In situ hybridization results and examples for course Trude SchwarzacherPat (JS) Heslop-Harrison
This document describes the use of total genomic DNA as a probe for in situ hybridization to identify the parental origin of chromatin in hybrids and determine if they are auto- or allo-polyploids. It can also be used to identify alien chromatin introgressed in breeding lines by determining its size and origin chromosome. The technique has been applied to many plant species to help understand hybrid genomes by examining chromosome behavior and chromatin function during meiosis and interphase.
Tandem Repeats and Satellite DNA in Bovideae - Colloquium on Animal CytogeneticsPat (JS) Heslop-Harrison
Tandemly repeated satellite DNA in the Artiodactyla - a lecture
Tandemly repeated, satellite, DNA sequences are an abundant component of the genome of most species, including the Artiodactyla. Multiple DNA familes are present, each in long tandem arrays, with members of each family present on one or more chromosomes at characteristic positions. In particular, several familes are located at the centromeres of most chromosomes, including acrocentrics, metacentrics and the sex chromosomes. Individual arrays are made up of variants of particular sequence motifs, which may be longer than 1,500 bp. In this presentation, we will discuss aspects of the evolution of repetitive sequences within and between chromosomes, with comparative data between different species. With pig, we will show details of the localization of tandem repeats at meiosis, and how these sequences relate to sequence amplification and loss, as well as the epigenetic behaviour of the resulting heterochromatin. In the Bovinae, we will show how molecular cytogenetic methods are essential to build up a full picture of the behaviour and distribution of satellite DNA where current sequencing methods are unable to assemble the sequences blocks accurately.
P. Heslop-Harrison1, T. Schwarzacher1 and R. Chaves2 (Phh4@le.ac.uk)
University of Leicester, Biology, Leicester LE1 7RH UK; 2Institute for Biotechnology and Bioengineering, Centre of Genomics and Biotechnology, University of Trás-os-Montes and Alto Douro, Vila Real, Portugal
Genome evolution - tales of scales DNA to crops,months to billions of years, ...Pat (JS) Heslop-Harrison
Pat Heslop-Harrison: Lecture to University of Malaya, Kuala Lumpur, Malaysia December 2013
Some DNA sequences are recognizable in all organisms and originated with the start of life. Others are unique to a single species. Some sequences are present in single copies in genomes, while others are present as millions of copies. The total amount of DNA in cells of an advanced eukaryotic species can vary over three orders of magnitude, and chromosome number can vary similarly. How can such huge variations be accommodated within the constraints of organism growth, development and reproduction? What are the evolutionary implications of these huge variations? How can we use the information to understand plant evolution, cytogenetics, genetics and epigenetics? What are the implications for future evolution, biodiversity and responses of plants during plant breeding or climate change?
Lecture 2 from Pat Heslop-Harrison for BS1003 - Cell and Developmental Biology. The transition to flowering. How do plants decide to flower? How do they respond to daylength (photoperiod) and temperature? For information from light, phytochrome is the photoreceptor, but not the clock/time measuring process. Pfr (phytochrome far red) is always the active form of phytochrome, but the function is different in long day plants and short day plants. Pfr promotes flowering in LDPs but inhibits flowering in SDPs.
Lecture for undergraduates on University of Leicester course BS1003 - Light and plant development.
It starts with some reflection on learning and approaches to study relevant to first year students, and then discusses the role of light in plant development, with a focus on experimental evidence.
LF Energy Webinar: Carbon Data Specifications: Mechanisms to Improve Data Acc...DanBrown980551
This LF Energy webinar took place June 20, 2024. It featured:
-Alex Thornton, LF Energy
-Hallie Cramer, Google
-Daniel Roesler, UtilityAPI
-Henry Richardson, WattTime
In response to the urgency and scale required to effectively address climate change, open source solutions offer significant potential for driving innovation and progress. Currently, there is a growing demand for standardization and interoperability in energy data and modeling. Open source standards and specifications within the energy sector can also alleviate challenges associated with data fragmentation, transparency, and accessibility. At the same time, it is crucial to consider privacy and security concerns throughout the development of open source platforms.
This webinar will delve into the motivations behind establishing LF Energy’s Carbon Data Specification Consortium. It will provide an overview of the draft specifications and the ongoing progress made by the respective working groups.
Three primary specifications will be discussed:
-Discovery and client registration, emphasizing transparent processes and secure and private access
-Customer data, centering around customer tariffs, bills, energy usage, and full consumption disclosure
-Power systems data, focusing on grid data, inclusive of transmission and distribution networks, generation, intergrid power flows, and market settlement data
"$10 thousand per minute of downtime: architecture, queues, streaming and fin...Fwdays
Direct losses from downtime in 1 minute = $5-$10 thousand dollars. Reputation is priceless.
As part of the talk, we will consider the architectural strategies necessary for the development of highly loaded fintech solutions. We will focus on using queues and streaming to efficiently work and manage large amounts of data in real-time and to minimize latency.
We will focus special attention on the architectural patterns used in the design of the fintech system, microservices and event-driven architecture, which ensure scalability, fault tolerance, and consistency of the entire system.
"Frontline Battles with DDoS: Best practices and Lessons Learned", Igor IvaniukFwdays
At this talk we will discuss DDoS protection tools and best practices, discuss network architectures and what AWS has to offer. Also, we will look into one of the largest DDoS attacks on Ukrainian infrastructure that happened in February 2022. We'll see, what techniques helped to keep the web resources available for Ukrainians and how AWS improved DDoS protection for all customers based on Ukraine experience
Essentials of Automations: Exploring Attributes & Automation ParametersSafe Software
Building automations in FME Flow can save time, money, and help businesses scale by eliminating data silos and providing data to stakeholders in real-time. One essential component to orchestrating complex automations is the use of attributes & automation parameters (both formerly known as “keys”). In fact, it’s unlikely you’ll ever build an Automation without using these components, but what exactly are they?
Attributes & automation parameters enable the automation author to pass data values from one automation component to the next. During this webinar, our FME Flow Specialists will cover leveraging the three types of these output attributes & parameters in FME Flow: Event, Custom, and Automation. As a bonus, they’ll also be making use of the Split-Merge Block functionality.
You’ll leave this webinar with a better understanding of how to maximize the potential of automations by making use of attributes & automation parameters, with the ultimate goal of setting your enterprise integration workflows up on autopilot.
QA or the Highway - Component Testing: Bridging the gap between frontend appl...zjhamm304
These are the slides for the presentation, "Component Testing: Bridging the gap between frontend applications" that was presented at QA or the Highway 2024 in Columbus, OH by Zachary Hamm.
ScyllaDB is making a major architecture shift. We’re moving from vNode replication to tablets – fragments of tables that are distributed independently, enabling dynamic data distribution and extreme elasticity. In this keynote, ScyllaDB co-founder and CTO Avi Kivity explains the reason for this shift, provides a look at the implementation and roadmap, and shares how this shift benefits ScyllaDB users.
Northern Engraving | Nameplate Manufacturing Process - 2024Northern Engraving
Manufacturing custom quality metal nameplates and badges involves several standard operations. Processes include sheet prep, lithography, screening, coating, punch press and inspection. All decoration is completed in the flat sheet with adhesive and tooling operations following. The possibilities for creating unique durable nameplates are endless. How will you create your brand identity? We can help!
Introducing BoxLang : A new JVM language for productivity and modularity!Ortus Solutions, Corp
Just like life, our code must adapt to the ever changing world we live in. From one day coding for the web, to the next for our tablets or APIs or for running serverless applications. Multi-runtime development is the future of coding, the future is to be dynamic. Let us introduce you to BoxLang.
Dynamic. Modular. Productive.
BoxLang redefines development with its dynamic nature, empowering developers to craft expressive and functional code effortlessly. Its modular architecture prioritizes flexibility, allowing for seamless integration into existing ecosystems.
Interoperability at its Core
With 100% interoperability with Java, BoxLang seamlessly bridges the gap between traditional and modern development paradigms, unlocking new possibilities for innovation and collaboration.
Multi-Runtime
From the tiny 2m operating system binary to running on our pure Java web server, CommandBox, Jakarta EE, AWS Lambda, Microsoft Functions, Web Assembly, Android and more. BoxLang has been designed to enhance and adapt according to it's runnable runtime.
The Fusion of Modernity and Tradition
Experience the fusion of modern features inspired by CFML, Node, Ruby, Kotlin, Java, and Clojure, combined with the familiarity of Java bytecode compilation, making BoxLang a language of choice for forward-thinking developers.
Empowering Transition with Transpiler Support
Transitioning from CFML to BoxLang is seamless with our JIT transpiler, facilitating smooth migration and preserving existing code investments.
Unlocking Creativity with IDE Tools
Unleash your creativity with powerful IDE tools tailored for BoxLang, providing an intuitive development experience and streamlining your workflow. Join us as we embark on a journey to redefine JVM development. Welcome to the era of BoxLang.
"Choosing proper type of scaling", Olena SyrotaFwdays
Imagine an IoT processing system that is already quite mature and production-ready and for which client coverage is growing and scaling and performance aspects are life and death questions. The system has Redis, MongoDB, and stream processing based on ksqldb. In this talk, firstly, we will analyze scaling approaches and then select the proper ones for our system.
inQuba Webinar Mastering Customer Journey Management with Dr Graham HillLizaNolte
HERE IS YOUR WEBINAR CONTENT! 'Mastering Customer Journey Management with Dr. Graham Hill'. We hope you find the webinar recording both insightful and enjoyable.
In this webinar, we explored essential aspects of Customer Journey Management and personalization. Here’s a summary of the key insights and topics discussed:
Key Takeaways:
Understanding the Customer Journey: Dr. Hill emphasized the importance of mapping and understanding the complete customer journey to identify touchpoints and opportunities for improvement.
Personalization Strategies: We discussed how to leverage data and insights to create personalized experiences that resonate with customers.
Technology Integration: Insights were shared on how inQuba’s advanced technology can streamline customer interactions and drive operational efficiency.
Dandelion Hashtable: beyond billion requests per second on a commodity serverAntonios Katsarakis
This slide deck presents DLHT, a concurrent in-memory hashtable. Despite efforts to optimize hashtables, that go as far as sacrificing core functionality, state-of-the-art designs still incur multiple memory accesses per request and block request processing in three cases. First, most hashtables block while waiting for data to be retrieved from memory. Second, open-addressing designs, which represent the current state-of-the-art, either cannot free index slots on deletes or must block all requests to do so. Third, index resizes block every request until all objects are copied to the new index. Defying folklore wisdom, DLHT forgoes open-addressing and adopts a fully-featured and memory-aware closed-addressing design based on bounded cache-line-chaining. This design offers lock-free index operations and deletes that free slots instantly, (2) completes most requests with a single memory access, (3) utilizes software prefetching to hide memory latencies, and (4) employs a novel non-blocking and parallel resizing. In a commodity server and a memory-resident workload, DLHT surpasses 1.6B requests per second and provides 3.5x (12x) the throughput of the state-of-the-art closed-addressing (open-addressing) resizable hashtable on Gets (Deletes).
How information systems are built or acquired puts information, which is what they should be about, in a secondary place. Our language adapted accordingly, and we no longer talk about information systems but applications. Applications evolved in a way to break data into diverse fragments, tightly coupled with applications and expensive to integrate. The result is technical debt, which is re-paid by taking even bigger "loans", resulting in an ever-increasing technical debt. Software engineering and procurement practices work in sync with market forces to maintain this trend. This talk demonstrates how natural this situation is. The question is: can something be done to reverse the trend?
"NATO Hackathon Winner: AI-Powered Drug Search", Taras KlobaFwdays
This is a session that details how PostgreSQL's features and Azure AI Services can be effectively used to significantly enhance the search functionality in any application.
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We'll also discuss how the azure_ai extension on PostgreSQL databases in Azure and Azure AI Services were utilized to create vectors from user input, a feature beneficial when users wish to find specific items based on text prompts. While our application's case study involves a drug search, the techniques and principles shared in this session can be adapted to improve search functionality in a wide range of applications. Join us to learn how PostgreSQL and Azure AI can be harnessed to enhance your application's search capability.
AppSec PNW: Android and iOS Application Security with MobSFAjin Abraham
Mobile Security Framework - MobSF is a free and open source automated mobile application security testing environment designed to help security engineers, researchers, developers, and penetration testers to identify security vulnerabilities, malicious behaviours and privacy concerns in mobile applications using static and dynamic analysis. It supports all the popular mobile application binaries and source code formats built for Android and iOS devices. In addition to automated security assessment, it also offers an interactive testing environment to build and execute scenario based test/fuzz cases against the application.
This talk covers:
Using MobSF for static analysis of mobile applications.
Interactive dynamic security assessment of Android and iOS applications.
Solving Mobile app CTF challenges.
Reverse engineering and runtime analysis of Mobile malware.
How to shift left and integrate MobSF/mobsfscan SAST and DAST in your build pipeline.
AppSec PNW: Android and iOS Application Security with MobSF
Domestication, Diversity and Molecular Cytogenetics Pat Heslop-Harrison
1. Pat Heslop-Harrison
Talk 2: Genome evolution: perspectives from billions
of years to plant breeding timescales, from the base
pair to trillions of bases, and from the cell to the planet
and beyond
phh4@le.ac.uk
www.molcyt.com pw/user: ‘visitor’
Social media: pathh1 Twitter/YouTube
PAU, Ludhiana 21 – 2 – 12
4. Genomics & Genome
organization in
chromosomes
Hybrids/polyploids
Biodiversity
Systems biology
Introgression and
breeding
Socio-economics and
applications
5. l Those where people control their
reproduction and nutrition
lMany alternatives
People control their access to space
People have selected the variety
They are different from wild species
They would die out in the wild
02/03/2012 Species useful to humans 5
6. l Those where people control their
reproduction and nutrition
What about
Weeds
Commensuals
Diseases
?
02/03/2012 6
8. ¡ Animals and plants
§ Not ‘fussy’ for diet, soil, climate
§ Control reproduction
▪ Fast and fertile
§ Fast growing
§ Doesn’t die
§ Thrives in monoculture
§ Not aggressive/unpleasant
8
¡ Are there many candidate species?
9. ¡ 350,000 plants
¡ 4,629 mammals
¡ 9,200 birds
¡ 10,000,000 insects
¡ 500,000 fungi
¡ But only 200 plants, 15
mammals, 5 birds, c. 5 fungi and
9 2 insects are domesticated
10. ¡ Spread of these few species
¡ Little change since early agriculture
¡ Repeated domestication of these species
(sometimes)
¡ Lack of new species even with attempts
with species known to be valuable
¡ Some groups of good candidates with no
domestication eg ferns, sub-Saharan
mammals ...
10
§ Two ferns are invasive problem
11. ¡ New uses and demands – biofuels, animal
feed, medicinal/neutraceutical,
water/climate, food changes
¡ Knowledge why species aren’t suitable for
domestication or were not useful
¡ Better understanding of genetics and
selection
¡ Sustainability of production
¡ Reliability of production
13. About 10,000 years before
present
Plants and animals
In context:
Humans 6,000,000 years since
divergence from apes
or 50,000 years since recognizably
‘modern’
02/03/2012
Worldwide! 13
14. Genetic:
¡ No seed dormancy
¡ Determinate and synchronized growth
¡ Gigantism in the harvested parts
¡ No seed dispersal (after Hammer)
¡ Increased harvest index
¡ Sweetness no bitterness
¡ Productivity high
¡ Not toxic
All still a challenge today – and many
improvements are still coming
15. ¡ Technology:
¡ Tilling, planting, watering, feeding,
weeding, disease control, ‘growing’,
harvesting, threshing, storing, packaging,
transporting, propagating, fields, cooking
and preparation
¡ All still a challenge today – with many
changes and opportunities – worldwide
16.
17. ¡ Human: a tiny part of history
¡ Many animals plan ahead: store food, make
nests, post guards/lookouts, plan battle
strategies, broker marriages, build sanitation
systems/toilets ... But only two farm
¡ Ants: clearing weeds, farming insects and
fungi, feeding them, maintaining fungal
cultures ...
18. ¡ And its worse ...
¡ If you put goats on an island, after 10 years you
will only have goat-proof plants left!
¡ Humans too have strong tendency to
overexploitation
§ Dodo
§ Cape Cod
19. Population increase
Population increase
Chicken
↑
Farming
Competitive Advantage
↓
Farming
Egg
02/03/2012 19
20. (Not Archaeology and Anthropology!)
Hunter-gatherer no longer sustainable
Over-exploitation?
Habitat destruction/extinction?
Population growth?
Climate change? Food stability?
Diet change? sf
(Is farming reaching its end now?)
02/03/2012 20
21. ¡ Habitat destruction
¡ Climate change (abiotic stresses)
¡ Diseases (biotic stresses)
¡ Changes in what people want
¡ Blindness to what is happening
¡ Unwillingness to change
22.
23. ¡ Will not be displaced
¡ Continue to need 1 to 1.5% year-on-year
productivity increase
¡ Increased sustainability essential
¡ Major breeding targets
§ Post-harvest losses
§ Water use
§ Disease resistance
§ Quality
23
30. From Ian Mackay, NIAB, UK. 2009. Re-analyses of historical series of variety trials:
lessons from the past and opportunities for the future. SCRI website.
38. ¡ Eyespot (fungus
Pseudocercosporella)
resistance from Aegilops
ventricosa introduced to
wheat by chromosome
engineering
¡ Many diseases where all
varieties are highly
susceptible
¡ Alien variation can be
found and used7
¡ Host and non-host
resistances
44. Size and location of
chromosome regions
from radish (Raphanus
sativus) carrying the
fertility restorer Rfk1
gene and transfer to
spring turnip rape
(Brassica rapa)
Tarja Niemelä, Mervi
Seppänen, Farah
Badakshi,Veli-Matti
Rokka and J.S.(Pat)
Heslop-Harrison
Chromosome
Research (subject to
minor revision Feb
2012)
45.
46. Cell fusion
hybrid of two
4x tetraploid
tobacco
species
Patel, Badakshi, HH,
Davey et al 2011
Annals of Botany
47.
48.
49. ¡ How many genes are there?
¡ 1990s: perhaps 100,000
¡ 2000: 25,000
¡ How does this give the range of functions and
control?
Najl Valeyev
50. ¡ Increased sustainability
¡ Increased value
¡ Uses genes outside the
conventional genepool
Benefits to all stakeholders:
Breeders, Farmers, Processors,
Retailers, Consumers, Citizens
in developed and developing countries
and to all members of society.
50
51. United Nations
Millennium Development Goals- MDGs
• Goal 1 – Eradicate extreme
poverty and hunger
•
Goal 2 – Achieve universal primary education
• Goal 3 – Promote gender
equity and empower women
• Goal 4 – Reduce child
mortality
• Goal 5 – Improve maternal
health
• Goal 6- Combat HIV/AIDS, malaria and other
diseases
• Goal 7 - Ensure environmental
sustainability
• Goal 8 - Develop a global
partnership for development
52. ¡ Cross the best with the best and hope for
something better
¡ Decide what is wanted and then plan how to get it
¡ - variety crosses
¡ - mutations
¡ - hybrids (sexual or cell-fusion)
¡ - genepool
¡ - transformation
53. ¡ Optimistic for improved crops from novel
germplasm
¡ Benefits for people of developed and
developing countries
¡ Major role for national and international
governmental breeding
¡ Major role for private-sector local,
national and multi-national breeders
53
54. ¡ The additions to the FAO list of
crops since 1961
§ Triticale
§ Kiwi fruit
§ Jojoba
+ two split categories:
popcorn, feed legumes
54
55. ¡ The additions to the FAO list
§ Triticale (Genome engineering)
§ Kiwi fruit (High value niche)
§ Jojoba (New product)
§ Popcorn is split (High value)
55
56. • Food (people)
• Feed (animals)
• Fuel (biomass and liquid)
• Flowers (ornamental and horticulture)
• Fibres & chemicals
• Construction (timber)
• Products (wood, ‘plastics’)
• Fibres (paper, clothing)
• Fun – Recreational/Environmental
• Golf courses, horses, walking etc.
• Environmental - Water catchments,
Biodiversity, Buffers, Carbon capture,
Security
• Pharmaceuticals
57. ¡ Separate into increases in inputs
(resources, labour and capital) and
technical progress
¡ 90% of the growth in US output per
worker is attributable to technical
progress
Robert Solow – Economist
60. ¡ Sequences
¡ Genes / motifs
¡ Repetitive DNA
¡ Chromosomes ¡ Mutation
¡ Chromosome sets ¡ Rearrangement
(‘Genomes’) ¡ Duplication
¡ Genotypes/CVs ¡ Deletion
¡ Species ¡ Homogenization
¡ Genera and above
¡ Crops / wild species
¡ Selection
¡ Speciation
61. ¡ Farmers and agriculture underpin the well-being of the world’s
population. Agriculture is changing continuously: every year for the last
10,000 years, farmers have improved their weed control and water
management, and each decade, farmers have won and lost battles with
pests and diseases, and adopted new varieties of their crops. Over a
longer timescale of 50 to 100 years, they introduce new species to
cultivation and the food supply, even if the exchanges of old-world and
new-world crops in the 16th and 17th centuries – including maize and
potato from tropical America with wheat from the middle-east and sugar
cane from southeast Asia – are unlikely to be repeated. ‘Novelty’ in crops
can come from finding and exploiting new diversity in existing major
crops or from improving and introducing species not previously used on a
significant scale. The exploitation of new diversity is important to the
livelihood of subsistence farmers and commercial growers. Modern
genetics, mutation and molecular methods, and plant breeding can
benefit producers, consumers and the environment.
62. ¡ It is interesting to contemplate … many
plants of many kinds … and to reflect
that these elaborately constructed
forms, so different from each other …
63. ¡ There is grandeur in this view of life, with its
several powers ... whilst this planet has gone
circling on according to the fixed law of
gravity, from so simple a beginning endless
forms most beautiful and most wonderful
have been, and are being evolved.
64. 1: Genes, genomes and genomics in crops
2: Species, crops and domestication
3: Diversity sources: mutations and germplasm
4: Genome & chromosome organization
5: Markers, mapping and QTL analysis
6: DNA markers from genomics
7: Markers for biodiversity
8: Superdomestication and breeding
9: Agriculture, food and Millennium Dvlpmnt Goals
10: PCR for genes and diversity
65.
66. • Targeted breeding and transgenic
strategies
• Increase in high value niche crops
66
68. ¡ Genes, gene combinations and species with
limited exploitation in agriculture
¡ Present in non-domesticated species,
unimproved cultigens and crops with
different characteristics
68
69.
70. ¡ Make more money - OUTPUT
¡ Sell more for the same per unit
¡ Sell the same units for more
¡ Sell different (produce or service)
¡ Spend less money - INPUT
¡ Less inputs
¡ Less labour
¡ Less capital (land and equipment)
71. ¡ There aren’t any!
¡ Crops come from anywhere
¡ They might be grown anywhere
¡ Polyploids and diploids (big genomes-small
genomes, many chromosomes-few
chromosomes)
¡ Seeds, stems, tubers, fruits, leaves
72. ¡ 40% of the world's protein needs are derived
from atmospheric nitrogen fixed by the
Haber-Bosch process and its successors.
¡ Global consumption of fertilizer (chemically
fixed nitrogen) 80 million tonnes
¡ <<200 million tonnes fixed naturally
73. ¡ Farm
§ Not wild-collected
§ Mostly kept land in production
▪ No slash/burn
▪ Erosion control
▪ Intelligent irrigation
74. ¡ Over the last 150 years,
¡ 1.5% reduction in production costs per year
¡ similar across cereals, fruits, milk, meat … coal, iron
¡ With increased quality and security
¡ Remarkable total of 10-fold reduction in costs
75. Pat Heslop-Harrison
Talk 2: Genome evolution: perspectives from billions
of years to plant breeding timescales, from the base
pair to trillions of bases, and from the cell to the planet
and beyond
phh4@le.ac.uk
www.molcyt.com pw/user: ‘visitor’
Social media: pathh1 Twitter/YouTube
PAU, Ludhiana 21 – 2 – 12