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Bioteknologi Pertanian
Lisnawita
Mikroba
Rekombinan
 Mikroba rekombinan
 DNA rekombinan
Metode perakitan
DNA (Deoxyribonucleic acid)
 adalah sejenis asam nukleat yang tergolong
biomolekul utama penyusun berat kering
setiap organisme.
 peran DNA di dalam sebuah sel adalah
sebagai materi genetik.
 DNA adalah pembawa informasi genetik di
dalam suatu sel
Kumpulan teknik atau motode yang
digunakan untuk mengkombinasikan
gen-gen secara buatan
Proses : rekombinasi
Hasil : rekombinan
Teknologi DNA rekombinan
Teknologi DNA rekombinan
 Rekombinasi antara molekul DNA dari
organisme hidup yang berbeda : fenomena
umum di alam
 Contoh : Corynebacterium diphtheriae yang
diinfeksi oleh virus ß menghasilkan toksin
yang bertanggung jawab terhadap gejala
dipteri
 Perubahan genetik pada bakteri yang
disebabkan virus merupakan rekayasa genetik
di alam
Teknologi DNA rekombinan
Teknologi DNA rekombinan
Teknologi DNA rekombinan
Teknologi DNA rekombinan
Duplikasi fenomena alam di laboratorium
 Mengembangkan metode introduksi berbagai
informasi genetik ke dalam suatu organisme
 Produksi bahan mahal yang tidak mungkin
dibuat secara tradisional
Teknologi DNA rekombinan
Teknologi DNA rekombinan
Teknologi DNA rekombinan
Teknologi DNA rekombinan
PLASMID :
Kromoson – vs - Plasmid
Memotong DNA
Menggunakan enzim restriksi yaitu :
enzim yang memotong dsDNA (double
stranded DNA) pada situs spesifik.
Menyambung DNA
Tahapan DNA rekombinan
Teknologi DNA rekombinan
(Kloning gen)
Kloning DNA ke plasmid
 ..Video biotek▶ Steps in Cloning a Gene -
YouTube [360p].mp4
 ..Video biotekRecombinant DNA ©2004
Demonstratives, Inc. - YouTube [360p].mp4
Seleksi bakteri pembawa
DNA rekombinan
Performing the Spread
Plate method I
1: Choose appropriate nutrient
agar plate with the correct
antibiotic (and X-gal) if visual
screening
2: Using sterile technique transfer a
loopful of bacteria from a culture tube
onto plate (or 100l of bacterial
culture using a pipette)
3: Dip glass “hockey stick” in
70% ethanol. Holding it
DOWNWARDS flame until
alcohol is burned off. DO NOT
put back into alcohol
4: Remove lid of petri dish. With one
hand rotate dish. With other hand
move hockey stick lightly over surface
to spread the inoculum evenly
Performing the Spread Plate
method II
70% EtOH
“Spreader” or
“Hockey Stick”
Keep flame
away from
alcohol !!
Performing a Plate Streak I
1: Flame metal
inoculating loop,
let cool
momentarily.
2-3: Using sterile
technique transfer a
loop of bacterial
culture or single
colony onto loop
4: With one hand remove
lid of dish. With other
hand lightly brush the
loop back and forth on one
quadrant of the dish
Performing a Plate Streak II
4: Reflame metal
inoculating loop,
let cool
momentarily.
5,6,7: Rotate petri dish 90° Use 1st streak as
inoculum for 2nd streak (only pass the loop
through the 1st streak once). Repeat once
more rotating dish 90° and sterilizing loop again
8 :Incubate o/n at 37°C
Plate Streak Method
This is an example of a good streak for isolation using the "four
corners" method.
This is not a great streak plate but
it is serviceable, as there are a
few isolated colonies. - would have
been better if the loop had been
flamed between each sector.
This is an example of how NOT to
streak for isolation. Scribbling is not
streaking, and most likely will not
result in isolated colonies.
After Incubating the
plate overnight at
37°C- individual
colonies of
transformed bacteria
should be seen
Each team will pick two
individual colonies
(clones) and streak on
a new plate (single
colony purification) for
next week
Bacterial colonies transformed with pUC18
blue colonies
(contain non-recombinant DNA
molecules)
White colonies
(contain recombinant DNA
molecules)
 ..Video biotek▶ dna cloning - YouTube
[360p].mp4
Manfaat teknologi DNA rekombinan
 Dengan mengisolasi dan mempelajari masing-
masing gen akan diperoleh pengetahuan
tentang fungsi dan mekanisme kontrolnya.
 teknologi ini memungkinkan diperolehnya
produk gen tertentu dalam waktu lebih cepat
dan jumlah lebih besar daripada produksi
secara konvensional.
Deteksi keberadaan DNA sisipan
1. Pre Denaturasi
2. Denaturasi
3. Annealing
4. Ekstensi
5. Post ekstensi (pemantapan)
Tahapan-tahapan PCR
PCR Animation
Please click here.
1st cycle 2nd cycle 3rd cycle
Process
Denature
Anneal Primer
Replicate
DNA
1 2 54M 8
10
116 7
391 bp
M MM 7654
A B
3
238 bp
9
Contoh hasil PCR
Hasil penentuan urutan nukleotida DNA
sisipan (DNA sekuensing)
GR1-Jatim 2 TTGTTGTACGTGCCGTACCTTGCGGCATGTCTGCGCTTGTGTGCTACGTCCGTGGCCGTG 60
GR3-Jatim 3 TTGTTGCACGTGCCGTACCTTGCGGCATGTCTGCGCTTGTGTGCTACGTCCGTGGCCGTG 60
GR2-Jatim 1 TTGTTGTACGTGCCGTACCTTGCGGCATGTTTGCGCTTGTGTGCTACGTCCGTGGCCGTG 60
****** *********************** *****************************
GR1-Jatim 2 ATGAGACGACGTGTTAGGACCCGTGCCTGGCATTGGCACGTGGTTTAAGACTTGATGAGT 120
GR3-Jatim 3 ATGAGACGACGTGTTAGGACCCGTGCCTGGCATTGGCACGTGGTTTAAGACTTGATGAGT 120
GR2-Jatim 1 ATGAGACGACGTGTTAGGACCCGTGCCTGGCATTGGCACGTGGTTTAAGACTTGATGAGT 120
************************************************************
GR1-Jatim 2 GCCCGCAGGCACCGCCAGCTTTTTCCCATTTTTATTTATTTTTTATGCAATTCGATTGCT 180
GR3-Jatim 3 GCCCGCAGGCACCGCCAGCTTTTTCCCATTTTTATTTATTTTTTATGCAATTCGATTGCT 180
GR2-Jatim 1 GCCCGCAGGCACCGCCAGCTTTTTCCCATTTTTATTTATTTTTTATGCAATTCGATTGCT 180
************************************************************
GR1-Jatim 2 AAAATATTCTAGTCTTATCGGTGGATCACTCGGCTCGTGGATCGATGAAGATCGCTAGCC 240
GR3-Jatim 3 AAAATATTCTAGTCTTATCGGTGGATCACTCGGCTCSKGGATCGATGAAGATCGCTAGCC 240
GR2-Jatim 1 AAAATATTCTAGTCTTATCGGTGGATCACTCGGCTCGKGGATCGATGAARATCGCTAGCC 240
************************************ *********** **********
GR1-Jatim 2 TTCTGCA 247
GR3-Jatim 3 TTCTGCA 247
GR2-Jatim 1 TTCTGCA 247
*******
Hasil pembacaan DNA sekuensing
Bidang Hukum
Pelaku kejahatan dapat diidentifikasi dengan
menggunakan analisis Sidik jari DNA .
Misalnya : Kasus perkosaan
0.2% Hybrid Seed
1.4% Food
1.8% Starch
3.7% Alcohol
5.8% Sweeteners
44.7% Animal
Feed/Residual
16.8% Exports
25.6% Ending Stocks
(Buffer against a bad
crop)
Avg Annual US Usage
Oil is extracted from the
germ (embryo) for cooking,
Starch in building materials
or intravenous solutions, the
shell (hull) is used in animal
feed
Source: National Geographic
June 1993 p91-117

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dna rekombinan

  • 3.  Mikroba rekombinan  DNA rekombinan Metode perakitan
  • 4. DNA (Deoxyribonucleic acid)  adalah sejenis asam nukleat yang tergolong biomolekul utama penyusun berat kering setiap organisme.  peran DNA di dalam sebuah sel adalah sebagai materi genetik.  DNA adalah pembawa informasi genetik di dalam suatu sel
  • 5. Kumpulan teknik atau motode yang digunakan untuk mengkombinasikan gen-gen secara buatan Proses : rekombinasi Hasil : rekombinan Teknologi DNA rekombinan
  • 6. Teknologi DNA rekombinan  Rekombinasi antara molekul DNA dari organisme hidup yang berbeda : fenomena umum di alam  Contoh : Corynebacterium diphtheriae yang diinfeksi oleh virus ß menghasilkan toksin yang bertanggung jawab terhadap gejala dipteri  Perubahan genetik pada bakteri yang disebabkan virus merupakan rekayasa genetik di alam
  • 11. Duplikasi fenomena alam di laboratorium  Mengembangkan metode introduksi berbagai informasi genetik ke dalam suatu organisme  Produksi bahan mahal yang tidak mungkin dibuat secara tradisional Teknologi DNA rekombinan
  • 15. Kromoson – vs - Plasmid
  • 16. Memotong DNA Menggunakan enzim restriksi yaitu : enzim yang memotong dsDNA (double stranded DNA) pada situs spesifik.
  • 17.
  • 18.
  • 22. Kloning DNA ke plasmid
  • 23.  ..Video biotek▶ Steps in Cloning a Gene - YouTube [360p].mp4
  • 24.  ..Video biotekRecombinant DNA ©2004 Demonstratives, Inc. - YouTube [360p].mp4
  • 26.
  • 27. Performing the Spread Plate method I 1: Choose appropriate nutrient agar plate with the correct antibiotic (and X-gal) if visual screening 2: Using sterile technique transfer a loopful of bacteria from a culture tube onto plate (or 100l of bacterial culture using a pipette)
  • 28. 3: Dip glass “hockey stick” in 70% ethanol. Holding it DOWNWARDS flame until alcohol is burned off. DO NOT put back into alcohol 4: Remove lid of petri dish. With one hand rotate dish. With other hand move hockey stick lightly over surface to spread the inoculum evenly Performing the Spread Plate method II 70% EtOH “Spreader” or “Hockey Stick” Keep flame away from alcohol !!
  • 29. Performing a Plate Streak I 1: Flame metal inoculating loop, let cool momentarily. 2-3: Using sterile technique transfer a loop of bacterial culture or single colony onto loop 4: With one hand remove lid of dish. With other hand lightly brush the loop back and forth on one quadrant of the dish
  • 30. Performing a Plate Streak II 4: Reflame metal inoculating loop, let cool momentarily. 5,6,7: Rotate petri dish 90° Use 1st streak as inoculum for 2nd streak (only pass the loop through the 1st streak once). Repeat once more rotating dish 90° and sterilizing loop again 8 :Incubate o/n at 37°C
  • 31. Plate Streak Method This is an example of a good streak for isolation using the "four corners" method.
  • 32. This is not a great streak plate but it is serviceable, as there are a few isolated colonies. - would have been better if the loop had been flamed between each sector. This is an example of how NOT to streak for isolation. Scribbling is not streaking, and most likely will not result in isolated colonies.
  • 33. After Incubating the plate overnight at 37°C- individual colonies of transformed bacteria should be seen Each team will pick two individual colonies (clones) and streak on a new plate (single colony purification) for next week
  • 34. Bacterial colonies transformed with pUC18 blue colonies (contain non-recombinant DNA molecules) White colonies (contain recombinant DNA molecules)
  • 35.  ..Video biotek▶ dna cloning - YouTube [360p].mp4
  • 36. Manfaat teknologi DNA rekombinan  Dengan mengisolasi dan mempelajari masing- masing gen akan diperoleh pengetahuan tentang fungsi dan mekanisme kontrolnya.  teknologi ini memungkinkan diperolehnya produk gen tertentu dalam waktu lebih cepat dan jumlah lebih besar daripada produksi secara konvensional.
  • 38. 1. Pre Denaturasi 2. Denaturasi 3. Annealing 4. Ekstensi 5. Post ekstensi (pemantapan) Tahapan-tahapan PCR
  • 39. PCR Animation Please click here. 1st cycle 2nd cycle 3rd cycle Process Denature Anneal Primer Replicate DNA
  • 40.
  • 41. 1 2 54M 8 10 116 7 391 bp M MM 7654 A B 3 238 bp 9 Contoh hasil PCR
  • 42. Hasil penentuan urutan nukleotida DNA sisipan (DNA sekuensing)
  • 43. GR1-Jatim 2 TTGTTGTACGTGCCGTACCTTGCGGCATGTCTGCGCTTGTGTGCTACGTCCGTGGCCGTG 60 GR3-Jatim 3 TTGTTGCACGTGCCGTACCTTGCGGCATGTCTGCGCTTGTGTGCTACGTCCGTGGCCGTG 60 GR2-Jatim 1 TTGTTGTACGTGCCGTACCTTGCGGCATGTTTGCGCTTGTGTGCTACGTCCGTGGCCGTG 60 ****** *********************** ***************************** GR1-Jatim 2 ATGAGACGACGTGTTAGGACCCGTGCCTGGCATTGGCACGTGGTTTAAGACTTGATGAGT 120 GR3-Jatim 3 ATGAGACGACGTGTTAGGACCCGTGCCTGGCATTGGCACGTGGTTTAAGACTTGATGAGT 120 GR2-Jatim 1 ATGAGACGACGTGTTAGGACCCGTGCCTGGCATTGGCACGTGGTTTAAGACTTGATGAGT 120 ************************************************************ GR1-Jatim 2 GCCCGCAGGCACCGCCAGCTTTTTCCCATTTTTATTTATTTTTTATGCAATTCGATTGCT 180 GR3-Jatim 3 GCCCGCAGGCACCGCCAGCTTTTTCCCATTTTTATTTATTTTTTATGCAATTCGATTGCT 180 GR2-Jatim 1 GCCCGCAGGCACCGCCAGCTTTTTCCCATTTTTATTTATTTTTTATGCAATTCGATTGCT 180 ************************************************************ GR1-Jatim 2 AAAATATTCTAGTCTTATCGGTGGATCACTCGGCTCGTGGATCGATGAAGATCGCTAGCC 240 GR3-Jatim 3 AAAATATTCTAGTCTTATCGGTGGATCACTCGGCTCSKGGATCGATGAAGATCGCTAGCC 240 GR2-Jatim 1 AAAATATTCTAGTCTTATCGGTGGATCACTCGGCTCGKGGATCGATGAARATCGCTAGCC 240 ************************************ *********** ********** GR1-Jatim 2 TTCTGCA 247 GR3-Jatim 3 TTCTGCA 247 GR2-Jatim 1 TTCTGCA 247 ******* Hasil pembacaan DNA sekuensing
  • 44.
  • 45. Bidang Hukum Pelaku kejahatan dapat diidentifikasi dengan menggunakan analisis Sidik jari DNA . Misalnya : Kasus perkosaan
  • 46.
  • 47.
  • 48.
  • 49. 0.2% Hybrid Seed 1.4% Food 1.8% Starch 3.7% Alcohol 5.8% Sweeteners 44.7% Animal Feed/Residual 16.8% Exports 25.6% Ending Stocks (Buffer against a bad crop) Avg Annual US Usage Oil is extracted from the germ (embryo) for cooking, Starch in building materials or intravenous solutions, the shell (hull) is used in animal feed Source: National Geographic June 1993 p91-117