Use of ContentMine tools on the Open Access subset of EuropePubMedCentral to discover new knowledge about the Zika virus.
Three slides have embedded movies - these do not show in slideshare and a first pass of this can be seen as a single file at https://vimeo.com/154705161
Published on Feb 07, 2016 by PMR
Use of ContentMine tools on the Open Access subset of EuropePubMedCentral to discover new knowledge about the Zika virus. Includes clips of the software in action
Published on Feb 29, 2016 by PMR
An overview of Text and Data Mining (ContentMining) including live demonstrations. The fundamentals: discover, scrape, normalize , facet/index, analyze, publish are exemplified using the recent Zika outbreak. Mining covers textual and non-textual content and examples of chemistry and phylogenetic tress are given.
An overview of Text and Data Mining (ContentMining) including live demonstrations. The fundamentals: discover, scrape, normalize , facet/index, analyze, publish are exemplified using the recent Zika outbreak. Mining covers textual and non-textual content and examples of chemistry and phylogenetic tress are given.
Talk to OpenForum Academy (Open Forum Europe) about Text and data Mining. Four use cases selected fo non-scientists. Also discussion of latest on Europena copyright reform and TDM exceptions
Liberating facts from the scientific literature - Jisc Digifest 2016 TheContentMine
Published on Mar 4, 2016 by PMR
Text and data mining (TDM) techniques can be applied to a wide range of materials, from published research papers, books and theses, to cultural heritage materials, digitised collections, administrative and management reports and documentation, etc. Use cases include academic research, resource discovery and business intelligence.
This workshop will show the value and benefits of TDM techniques and demonstrate how ContentMine aims to liberate 100,000,000 facts from the scientific literature, and ContentMine will provide a hands on demo on a topical and accessible scientific/medical subject.
Published on Feb 07, 2016 by PMR
Use of ContentMine tools on the Open Access subset of EuropePubMedCentral to discover new knowledge about the Zika virus. Includes clips of the software in action
Published on Feb 29, 2016 by PMR
An overview of Text and Data Mining (ContentMining) including live demonstrations. The fundamentals: discover, scrape, normalize , facet/index, analyze, publish are exemplified using the recent Zika outbreak. Mining covers textual and non-textual content and examples of chemistry and phylogenetic tress are given.
An overview of Text and Data Mining (ContentMining) including live demonstrations. The fundamentals: discover, scrape, normalize , facet/index, analyze, publish are exemplified using the recent Zika outbreak. Mining covers textual and non-textual content and examples of chemistry and phylogenetic tress are given.
Talk to OpenForum Academy (Open Forum Europe) about Text and data Mining. Four use cases selected fo non-scientists. Also discussion of latest on Europena copyright reform and TDM exceptions
Liberating facts from the scientific literature - Jisc Digifest 2016 TheContentMine
Published on Mar 4, 2016 by PMR
Text and data mining (TDM) techniques can be applied to a wide range of materials, from published research papers, books and theses, to cultural heritage materials, digitised collections, administrative and management reports and documentation, etc. Use cases include academic research, resource discovery and business intelligence.
This workshop will show the value and benefits of TDM techniques and demonstrate how ContentMine aims to liberate 100,000,000 facts from the scientific literature, and ContentMine will provide a hands on demo on a topical and accessible scientific/medical subject.
Automatic Extraction of Knowledge from Biomedical literature TheContentMine
Published on Mar 16, 2016 by PMR
A plenary lecture to Cochrane Collaboration in Birmingham, on the value of automatically extracting knowledge. Covers the Why? How? What? Who? and problems and invites collaboration
Published on Jan 29, 2016 by PMR
Keynote talk to LEARN (LERU/H2020 project) for research data management. Emphasizes that problems are cultural not technical. Promotes modern approaches such as Git / continuous Integration, announces DAT. Asserts that the Right to Read in the Right to Mine. Calls for widespread development of content mining (TDM)
Automatic Extraction of Knowledge from Biomedical literaturepetermurrayrust
a plenary lecture to Cochrane Collaboration in Birmingham, on the value of automatically extracting knowledge. Covers the Why? How? What? Who? and problems and invites collaboration
Automatic Extraction of Knowledge from the Literaturepetermurrayrust
ContentMine tools (and the Harvest alliance) can be used to search the literature for knowledge, especially in biomedicine. All tools are Open and shortly we shall be indexing the complete daily scholarly literature
Automatic Extraction of Knowledge from the LiteratureTheContentMine
Published on May 11, 2016 by PMR
ContentMine tools (and the Harvest alliance) can be used to search the literature for knowledge, especially in biomedicine. All tools are Open and shortly we shall be indexing the complete daily scholarly literature
Amanuens.is HUmans and machines annotating scholarly literaturepetermurrayrust
about 10,000 scholarly articles ("papers") are published each day. Amanuens.is is a symbiont of ContentMine and Hypothes.is (both Shuttleworth projects/Fellows) which annotates theses using an array of controlled vocabularies ("dictionaries"). The results, in semantic form are used to annotate the original material. The talk had live demos and used plant chemistry as the examples
Can Computers understand the scientific literature (includes compscie material)TheContentMine
Published on Jan 24, 2014 by PMR
With the semantic web machines can autonomously carry out many knowledge-based tasks as well as humans. The main problems are not technical but the prevention of access to information. I advocate automatic downloading and indexing of all scientific information
Digital Scholarship: Enlightenment or Devastated Landscape? TheContentMine
Published on Dec 17, 2015 by PMR
Every year 500 Billion USD of public funding is spent on research, but much of this lies hidden in papers that are never read. I describe how machines can help us to read the literature. However there is massive opposition from publishers who are trying to prevent open scholarship and who build walled gardens that they control
Automatic Extraction of Science and Medicine from the scholarly literaturepetermurrayrust
Many scientists have to extract many facts out the scholarly literature - to evaluate other work or to extract useful collections of facts. This shows the approach, especially for systematic reviews of animal or clinical trials
Mining the scientific literature for plants and chemistrypetermurrayrust
ContentMine can read the daily scientific literature and extract facts. This talk was given to the OpenPlant project - with whom ContentMine collaborate at a meeting on 2016-07-25/27 in Norwich. Examples of extracted facts are given.
Talk to EBI Industry group on Open Software for chemical and pharmaceutical sciences. Covers examples of chemistry , wit demos, and argues that all public knowledge should be Openly accessible
Published on May 18, 2016 by PMR
Talk to EBI Industry group on Open Software for chemical and pharmaceutical sciences. Covers examples of chemistry , wit demos, and argues that all public knowledge should be Openly accessible
Amanuens.is HUmans and machines annotating scholarly literature TheContentMine
Published on May 19, 2016 by PMR
about 10,000 scholarly articles ("papers") are published each day. Amanuens.is is a symbiont of ContentMine and Hypothes.is (both Shuttleworth projects/Fellows) which annotates theses using an array of controlled vocabularies ("dictionaries"). The results, in semantic form are used to annotate the original material. The talk had live demos and used plant chemistry as the examples
High throughput mining of the scholarly literature; talk at NIHpetermurrayrust
The scientific and medical literature contains huge amounts of valuable unused information. This talk shows how to discover it, extract, re-use and interpret it. Wikidata is presented as a key new tool and infrastructure. Everyone can become involved. However some of the barriers to use are sociopolitical and these are identified and discussed.
High throughput mining of the scholarly literature TheContentMine
Published on Jun 7, 2016 by PMR
Talk given to statisticians in Tilburg, with emphasis on scholarly comms for detecting unusual features. Includes demo of Amanuens.is and image mining
High throughput mining of the plant-science literaturepetermurrayrust
We can now mine the plant science literature for facts, especially species (both plants and others), chemicals, diseases and other agricultural terms. This presentation gives a number of examples and links on how you can do this on the Open Access literature
Architecture of ContentMine Components contentmine.orgpetermurrayrust
This is the evolving architecture of ContentMine (contentmine.org) architecture. It includes an overview ( slide #2, ) showing getpapers, quickscrape, norma and ami.
The key container is the CTree and the architecture shows where components are added or transformed to this.
These slides are dated and may be out-of-date wrt code. Some diagrams are autogenerated from *.dot files.
Please use http://discuss.contentmine.org/c/software as the main source of up-to-date info. Feel free to ask questions, offer help, critique, etc.
All s/w is Open (BSD, Apache2)
Mining facts from the plant science iteraturepetermurrayrust
Much of the plant science literature consists of valuable factual information with a range of well-defined "facets". These include Species, diseases, and (phyto)chemicals. The presentation shows how this information can be extracted automatically from the current literature and includes instructions for the use of ContentMine software
Basics of ContentMining presented to Synthetic Biologists. This was followed by a lively discussion of what components could be extracted from the literature
Automatic Extraction of Knowledge from Biomedical literature TheContentMine
Published on Mar 16, 2016 by PMR
A plenary lecture to Cochrane Collaboration in Birmingham, on the value of automatically extracting knowledge. Covers the Why? How? What? Who? and problems and invites collaboration
Published on Jan 29, 2016 by PMR
Keynote talk to LEARN (LERU/H2020 project) for research data management. Emphasizes that problems are cultural not technical. Promotes modern approaches such as Git / continuous Integration, announces DAT. Asserts that the Right to Read in the Right to Mine. Calls for widespread development of content mining (TDM)
Automatic Extraction of Knowledge from Biomedical literaturepetermurrayrust
a plenary lecture to Cochrane Collaboration in Birmingham, on the value of automatically extracting knowledge. Covers the Why? How? What? Who? and problems and invites collaboration
Automatic Extraction of Knowledge from the Literaturepetermurrayrust
ContentMine tools (and the Harvest alliance) can be used to search the literature for knowledge, especially in biomedicine. All tools are Open and shortly we shall be indexing the complete daily scholarly literature
Automatic Extraction of Knowledge from the LiteratureTheContentMine
Published on May 11, 2016 by PMR
ContentMine tools (and the Harvest alliance) can be used to search the literature for knowledge, especially in biomedicine. All tools are Open and shortly we shall be indexing the complete daily scholarly literature
Amanuens.is HUmans and machines annotating scholarly literaturepetermurrayrust
about 10,000 scholarly articles ("papers") are published each day. Amanuens.is is a symbiont of ContentMine and Hypothes.is (both Shuttleworth projects/Fellows) which annotates theses using an array of controlled vocabularies ("dictionaries"). The results, in semantic form are used to annotate the original material. The talk had live demos and used plant chemistry as the examples
Can Computers understand the scientific literature (includes compscie material)TheContentMine
Published on Jan 24, 2014 by PMR
With the semantic web machines can autonomously carry out many knowledge-based tasks as well as humans. The main problems are not technical but the prevention of access to information. I advocate automatic downloading and indexing of all scientific information
Digital Scholarship: Enlightenment or Devastated Landscape? TheContentMine
Published on Dec 17, 2015 by PMR
Every year 500 Billion USD of public funding is spent on research, but much of this lies hidden in papers that are never read. I describe how machines can help us to read the literature. However there is massive opposition from publishers who are trying to prevent open scholarship and who build walled gardens that they control
Automatic Extraction of Science and Medicine from the scholarly literaturepetermurrayrust
Many scientists have to extract many facts out the scholarly literature - to evaluate other work or to extract useful collections of facts. This shows the approach, especially for systematic reviews of animal or clinical trials
Mining the scientific literature for plants and chemistrypetermurrayrust
ContentMine can read the daily scientific literature and extract facts. This talk was given to the OpenPlant project - with whom ContentMine collaborate at a meeting on 2016-07-25/27 in Norwich. Examples of extracted facts are given.
Talk to EBI Industry group on Open Software for chemical and pharmaceutical sciences. Covers examples of chemistry , wit demos, and argues that all public knowledge should be Openly accessible
Published on May 18, 2016 by PMR
Talk to EBI Industry group on Open Software for chemical and pharmaceutical sciences. Covers examples of chemistry , wit demos, and argues that all public knowledge should be Openly accessible
Amanuens.is HUmans and machines annotating scholarly literature TheContentMine
Published on May 19, 2016 by PMR
about 10,000 scholarly articles ("papers") are published each day. Amanuens.is is a symbiont of ContentMine and Hypothes.is (both Shuttleworth projects/Fellows) which annotates theses using an array of controlled vocabularies ("dictionaries"). The results, in semantic form are used to annotate the original material. The talk had live demos and used plant chemistry as the examples
High throughput mining of the scholarly literature; talk at NIHpetermurrayrust
The scientific and medical literature contains huge amounts of valuable unused information. This talk shows how to discover it, extract, re-use and interpret it. Wikidata is presented as a key new tool and infrastructure. Everyone can become involved. However some of the barriers to use are sociopolitical and these are identified and discussed.
High throughput mining of the scholarly literature TheContentMine
Published on Jun 7, 2016 by PMR
Talk given to statisticians in Tilburg, with emphasis on scholarly comms for detecting unusual features. Includes demo of Amanuens.is and image mining
High throughput mining of the plant-science literaturepetermurrayrust
We can now mine the plant science literature for facts, especially species (both plants and others), chemicals, diseases and other agricultural terms. This presentation gives a number of examples and links on how you can do this on the Open Access literature
Architecture of ContentMine Components contentmine.orgpetermurrayrust
This is the evolving architecture of ContentMine (contentmine.org) architecture. It includes an overview ( slide #2, ) showing getpapers, quickscrape, norma and ami.
The key container is the CTree and the architecture shows where components are added or transformed to this.
These slides are dated and may be out-of-date wrt code. Some diagrams are autogenerated from *.dot files.
Please use http://discuss.contentmine.org/c/software as the main source of up-to-date info. Feel free to ask questions, offer help, critique, etc.
All s/w is Open (BSD, Apache2)
Mining facts from the plant science iteraturepetermurrayrust
Much of the plant science literature consists of valuable factual information with a range of well-defined "facets". These include Species, diseases, and (phyto)chemicals. The presentation shows how this information can be extracted automatically from the current literature and includes instructions for the use of ContentMine software
Basics of ContentMining presented to Synthetic Biologists. This was followed by a lively discussion of what components could be extracted from the literature
Published on May 18, 2015 by PMR
Basics of ContentMining presented to Synthetic Biologists. This was followed by a lively discussion of what components could be extracted from the literature
Next Generation Sequencing Informatics - Challenges and OpportunitiesChung-Tsai Su
Genetic data is the foundation of precision medicine. Next Generation Sequencing(NGS) enable us to get our whole genome data in affordable cost. How to process huge amount of NGS data effectively ?
Presentation in the "Whole genome sequencing for clinical microbiology:Translation into routine applications" Symposium , Basel , Switzerland, 2 Sep 2017
Liberating facts from the scientific literature - Jisc Digifest 2016Jisc
Text and data mining (TDM) techniques can be applied to a wide range of materials, from published research papers, books and theses, to cultural heritage materials, digitised collections, administrative and management reports and documentation, etc. Use cases include academic research, resource discovery and business intelligence.
This workshop will show the value and benefits of TDM techniques and demonstrate how ContentMine aims to liberate 100,000,000 facts from the scientific literature, and ContentMine will provide a hands on demo on a topical and accessible scientific/medical subject.
Global Information Systems for Plant Genetic Resources (2009)Dag Endresen
Global information systems for plant genetic resources. For the Caucasus germplasm network training course at the Nordic Genetic Resource Center (NordGen), Alnarp Sweden 29th January 2009.
This is a compilation of the Yeast genome project from the different databases and sources.
By:
Nazish Nehal,
M. Tech (Biotechnology),
University School of Biotechnology (USBT),
Guru Gobind Singh Indraprastha University (GGSIPU),
New Delhi (INDIA)
10.02.19
Invited talk
Symposium #1816, Managing the Exaflood: Enhancing the Value of Networked Data for Science and Society
Title: Advancing the Metagenomics Revolution
San Diego, CA
Can machines understand the scientific literature?petermurrayrust
A presentation to Cambridge MPhil Computational Biology. 2020-11-11 . Presenters Peter Murray-Rust, Shweata Hegde and Ambreen Hamadani from https://github.com/petermr/openvirus .
This chunk is PMR with a large break in the middle for SH and AH talks.
I cover Global Challenges, knowledge equity, semantics of scientific articles, Wikidata, Data Extraction from images, and ethics/politics.
Answer: Yes, technically. No, politically as the Publisher-Academic Complex will block it.
Semantic content created from Open Access papers to help in the fight against viral epidemics. Includes contributions from NIPGR interns, 5 supported by Indian National Young Academy of Scientists.
Overview of openVirus project. Interns in India have worked for 2 months to extract scientific knowledge from the literature about viral epidemics. Covers data science, machine learning and virtual collaboration
Automatic mining of data from materials science literaturepetermurrayrust
The literature on materials science (batteries, etc.) contains huge amounts of scientific facts, but not in easily accessible form. our AMI program has been developed to automatically:
scrape , clean, annotate and display/publish
data for re-use in science.
Examples will be given from electrochemistry, magnetism and other fields . The general principles and (open) tech are applicable to many other disciplines.
A presentation by Open Climate Knowledge for European Forum for Advanced Practices. Showing how the scientific literature can be searched for knowledge on this multidisciplinary topic.
XML for science; its huge potential; but are pubiishers preventing it?petermurrayrust
XML can represent almost all well derfined scientific objects. chemistry, plants medcine. But it's not yet widely used. Is this because publishers oppose thr re-use of science?
Early Career Reseachers in Science. Start Early, Be Open , Be Bravepetermurrayrust
Highlights the importance of supporting Early Career Researchers to pursue their own ideas, possibly alongside their main research. Illustrated with biology but applies to all fields of science. This was a 14 min presentation and shows narratives of how ECRs develop and reinforce each other.
Presentation given at NUI, Galway 2019-04-11 for Open Science Week.
An overview of Early Career Researchers, their innovation and contribution towards Open Infrastructure
The ContentMine system (Open Source) can search EuropePMC and download hundreds of articles in seconds. These can be indexed by AMI dictionaries allowing a rapid evaluations and refinement of the search
The scientific and medical literature is a vast resource of knowledge, but it needs turning into semantic FAIR form. The ContentMine can do this and we presented a rapid overview of the potential
A 10-minute talk to lovers of early science (e.g. 1600-1900) at the Royal Society. Archivists , computer vision, scientific historical metadata all relevant.
I chose 4 examples of monochrome diagrams that I can extract something from automatically. Some of the methids would scale to larger volumes , e.g. tables for figures, or maps with points
WikiFactMine: Ontology for Everybody and Everythingpetermurrayrust
WikiFactMine https://www.wikidata.org/wiki/Wikidata:WikiFactMine consists of several hundreds dictionaries created from Wikidata. They cover everything from science to medicine to geo to arts. Every item has a unique identifier (Q) and normally has several properties (P) creating a series of triples. Using SPARQL it's possible to create sophiticated queries and run them in seconds
The Publisher -Academic complex is a dystopian cycle where academia gives (mega)publishers manuscripts, reviews and money and the publishers give personal and institutional glory(vanity). This is analysed in its origins, impact and harm. The disruption can come from Advocacy/Activism, Community and Tools. Disruption comes from doing things Better or Novel, not Prices
AUDIO : https://soundcloud.com/damahub/peter-murray-rust-disturbing-the-publisher-academic-complex-210418-british-library
Thanks to DaMaHub
This has now been edited by Ewan McAndrew (Edinburgh Wikimedian in Residence) many thanks - to synchronize the slides with the soundtrack. https://media.ed.ac.uk/media/1_46h85ltt Brilliant
Paradise Lost and The Right to Read is the Right to Minepetermurrayrust
Presented to UIUC CIRSS seminars to a mixed group of Library, CS, domain scientists with a great contingent of Early Career Researchers. Starts by honouring the creation of the wonderful NCSA Mosaic at UIUC in 1993 and the paradise of knowledge and community it opened. Then shows the gradual and tragic decline of the web into a megacorporate neocolonialist empire, where knowledge is sacrificed for money and power.
You have seen many of the slides before but the words are different and have been recorded.
Report Back from SGO 2024: What’s the Latest in Cervical Cancer?bkling
Are you curious about what’s new in cervical cancer research or unsure what the findings mean? Join Dr. Emily Ko, a gynecologic oncologist at Penn Medicine, to learn about the latest updates from the Society of Gynecologic Oncology (SGO) 2024 Annual Meeting on Women’s Cancer. Dr. Ko will discuss what the research presented at the conference means for you and answer your questions about the new developments.
Flu Vaccine Alert in Bangalore Karnatakaaddon Scans
As flu season approaches, health officials in Bangalore, Karnataka, are urging residents to get their flu vaccinations. The seasonal flu, while common, can lead to severe health complications, particularly for vulnerable populations such as young children, the elderly, and those with underlying health conditions.
Dr. Vidisha Kumari, a leading epidemiologist in Bangalore, emphasizes the importance of getting vaccinated. "The flu vaccine is our best defense against the influenza virus. It not only protects individuals but also helps prevent the spread of the virus in our communities," he says.
This year, the flu season is expected to coincide with a potential increase in other respiratory illnesses. The Karnataka Health Department has launched an awareness campaign highlighting the significance of flu vaccinations. They have set up multiple vaccination centers across Bangalore, making it convenient for residents to receive their shots.
To encourage widespread vaccination, the government is also collaborating with local schools, workplaces, and community centers to facilitate vaccination drives. Special attention is being given to ensuring that the vaccine is accessible to all, including marginalized communities who may have limited access to healthcare.
Residents are reminded that the flu vaccine is safe and effective. Common side effects are mild and may include soreness at the injection site, mild fever, or muscle aches. These side effects are generally short-lived and far less severe than the flu itself.
Healthcare providers are also stressing the importance of continuing COVID-19 precautions. Wearing masks, practicing good hand hygiene, and maintaining social distancing are still crucial, especially in crowded places.
Protect yourself and your loved ones by getting vaccinated. Together, we can help keep Bangalore healthy and safe this flu season. For more information on vaccination centers and schedules, residents can visit the Karnataka Health Department’s official website or follow their social media pages.
Stay informed, stay safe, and get your flu shot today!
Tom Selleck Health: A Comprehensive Look at the Iconic Actor’s Wellness Journeygreendigital
Tom Selleck, an enduring figure in Hollywood. has captivated audiences for decades with his rugged charm, iconic moustache. and memorable roles in television and film. From his breakout role as Thomas Magnum in Magnum P.I. to his current portrayal of Frank Reagan in Blue Bloods. Selleck's career has spanned over 50 years. But beyond his professional achievements. fans have often been curious about Tom Selleck Health. especially as he has aged in the public eye.
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Introduction
Many have been interested in Tom Selleck health. not only because of his enduring presence on screen but also because of the challenges. and lifestyle choices he has faced and made over the years. This article delves into the various aspects of Tom Selleck health. exploring his fitness regimen, diet, mental health. and the challenges he has encountered as he ages. We'll look at how he maintains his well-being. the health issues he has faced, and his approach to ageing .
Early Life and Career
Childhood and Athletic Beginnings
Tom Selleck was born on January 29, 1945, in Detroit, Michigan, and grew up in Sherman Oaks, California. From an early age, he was involved in sports, particularly basketball. which played a significant role in his physical development. His athletic pursuits continued into college. where he attended the University of Southern California (USC) on a basketball scholarship. This early involvement in sports laid a strong foundation for his physical health and disciplined lifestyle.
Transition to Acting
Selleck's transition from an athlete to an actor came with its physical demands. His first significant role in "Magnum P.I." required him to perform various stunts and maintain a fit appearance. This role, which he played from 1980 to 1988. necessitated a rigorous fitness routine to meet the show's demands. setting the stage for his long-term commitment to health and wellness.
Fitness Regimen
Workout Routine
Tom Selleck health and fitness regimen has evolved. adapting to his changing roles and age. During his "Magnum, P.I." days. Selleck's workouts were intense and focused on building and maintaining muscle mass. His routine included weightlifting, cardiovascular exercises. and specific training for the stunts he performed on the show.
Selleck adjusted his fitness routine as he aged to suit his body's needs. Today, his workouts focus on maintaining flexibility, strength, and cardiovascular health. He incorporates low-impact exercises such as swimming, walking, and light weightlifting. This balanced approach helps him stay fit without putting undue strain on his joints and muscles.
Importance of Flexibility and Mobility
In recent years, Selleck has emphasized the importance of flexibility and mobility in his fitness regimen. Understanding the natural decline in muscle mass and joint flexibility with age. he includes stretching and yoga in his routine. These practices help prevent injuries, improve posture, and maintain mobilit
Prix Galien International 2024 Forum ProgramLevi Shapiro
June 20, 2024, Prix Galien International and Jerusalem Ethics Forum in ROME. Detailed agenda including panels:
- ADVANCES IN CARDIOLOGY: A NEW PARADIGM IS COMING
- WOMEN’S HEALTH: FERTILITY PRESERVATION
- WHAT’S NEW IN THE TREATMENT OF INFECTIOUS,
ONCOLOGICAL AND INFLAMMATORY SKIN DISEASES?
- ARTIFICIAL INTELLIGENCE AND ETHICS
- GENE THERAPY
- BEYOND BORDERS: GLOBAL INITIATIVES FOR DEMOCRATIZING LIFE SCIENCE TECHNOLOGIES AND PROMOTING ACCESS TO HEALTHCARE
- ETHICAL CHALLENGES IN LIFE SCIENCES
- Prix Galien International Awards Ceremony
Pulmonary Thromboembolism - etilogy, types, medical- Surgical and nursing man...VarunMahajani
Disruption of blood supply to lung alveoli due to blockage of one or more pulmonary blood vessels is called as Pulmonary thromboembolism. In this presentation we will discuss its causes, types and its management in depth.
Acute scrotum is a general term referring to an emergency condition affecting the contents or the wall of the scrotum.
There are a number of conditions that present acutely, predominantly with pain and/or swelling
A careful and detailed history and examination, and in some cases, investigations allow differentiation between these diagnoses. A prompt diagnosis is essential as the patient may require urgent surgical intervention
Testicular torsion refers to twisting of the spermatic cord, causing ischaemia of the testicle.
Testicular torsion results from inadequate fixation of the testis to the tunica vaginalis producing ischemia from reduced arterial inflow and venous outflow obstruction.
The prevalence of testicular torsion in adult patients hospitalized with acute scrotal pain is approximately 25 to 50 percent
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Ve...kevinkariuki227
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
These lecture slides, by Dr Sidra Arshad, offer a quick overview of physiological basis of a normal electrocardiogram.
Learning objectives:
1. Define an electrocardiogram (ECG) and electrocardiography
2. Describe how dipoles generated by the heart produce the waveforms of the ECG
3. Describe the components of a normal electrocardiogram of a typical bipolar leads (limb II)
4. Differentiate between intervals and segments
5. Enlist some common indications for obtaining an ECG
Study Resources:
1. Chapter 11, Guyton and Hall Textbook of Medical Physiology, 14th edition
2. Chapter 9, Human Physiology - From Cells to Systems, Lauralee Sherwood, 9th edition
3. Chapter 29, Ganong’s Review of Medical Physiology, 26th edition
4. Electrocardiogram, StatPearls - https://www.ncbi.nlm.nih.gov/books/NBK549803/
5. ECG in Medical Practice by ABM Abdullah, 4th edition
6. ECG Basics, http://www.nataliescasebook.com/tag/e-c-g-basics
micro teaching on communication m.sc nursing.pdfAnurag Sharma
Microteaching is a unique model of practice teaching. It is a viable instrument for the. desired change in the teaching behavior or the behavior potential which, in specified types of real. classroom situations, tends to facilitate the achievement of specified types of objectives.
- Video recording of this lecture in English language: https://youtu.be/lK81BzxMqdo
- Video recording of this lecture in Arabic language: https://youtu.be/Ve4P0COk9OI
- Link to download the book free: https://nephrotube.blogspot.com/p/nephrotube-nephrology-books.html
- Link to NephroTube website: www.NephroTube.com
- Link to NephroTube social media accounts: https://nephrotube.blogspot.com/p/join-nephrotube-on-social-media.html
How to Give Better Lectures: Some Tips for Doctors
ContentMine + EPMC: Finding Zika!
1. Content Mine + Europe PMC
Peter Murray-Rust,
ContentMine.org and UniversityofCambridge
London, UK 2016-02-08
Finding Zika!
getpapers and AMI download and analyze papers from EuropePMC API:
F/OSS tools from contentmine.org
Images from Wikimedia CC-BY-SA
2. The Right to Read is the Right to Mine**PeterMurray-Rust, 2011
http://contentmine.org
3. Semantic Fulltext
• EuropePMC coherent OpenAccess
• getpapers: query , download (through API).
• AMI filters, checks[1], transforms facts in papers.
• sequences, species, genera, genes,
dictionaries
[0] All operations shown run in total of <3 minutes.
[1] Dictionaries and lookup.
[2] Usable from home by anyone
Zika endemic areas
Wikimedia CC-BY-SA
4. catalogue
getpapers
query
Daily
Crawl
EPMC, arXiv
CORE , HAL,
(UNIV repos)
ToC
services
PDF HTML
DOC ePUB
TeX XML
PNG
EPS CSV
XLSURLs
DOIs
crawl
quickscrape
norma
Normalizer
Structurer
Semantic
Tagger
Text
Data
Figures
ami
UNIV
Repos
search
Lookup
CONTENT
MINING
Chem
Phylo
Trials
Crystal
Plants
COMMUNITY
plugins
Visualization
and Analysis
PloSONE, BMC,
peerJ… Nature, IEEE,
Elsevier…
Publisher Sites
scrapers
queries
taggers
abstract
methods
references
Captioned
Figures
Fig. 1
HTML tables
30, 000 pages/day
Semantic ScholarlyHTML
Facts
CONTENTMINE Complete OPEN Platform for Mining Scientific Literature
5. Download all Open Access “Zika” from
EuropePMC in 10 seconds
(click below for movie)
Aedes aegypti, Wikimedia CC-BY-SA
Note: movies of this and other slides can be seen at https://vimeo.com/154705161
6. Downloaded all Open Access “Zika” from
EuropePMC in 10 seconds
Final download screen
7. Eyeballing 20/120 Zika papers,
click below for movie
Yellow Fever Virus
Wikimedia CC-BY-SA
Note: movie of this and other slides can be seen at https://vimeo.com/154705161
8. 3011 virus
1939 Ae./Aedes
1212 dengue
901 mosquito/es
894 species
791 ZIKV
721 using
716 DENV
567 detection
513 aegypti
484 infection
442 RNA
428 protein
401 albopictus
360 viral
Commonest words in 120 Zika papers
Mosquito spp.
Wikimedia CC-BY-SA
9. Filtering local files for sequence and viruses
AMI (part of ContentMine software)
(click below for movie)
Note: movies of this and other slides can be seen at https://vimeo.com/154705161
10. DNA Primers in running text
…the sodium channel voltage dependent gene (Nav). Primers
used to amplify this fragment were AaNaA
5’-ACAATGTGGATCGCTTCCC-3’
and AaNaB 5’-TGGACAAAAGCAAGGCTAAG-3’(8).
The primers amplify a fragment of approximately 472…
Snippet (quotable under 2014 UK Statutory Instrument (“Hargreaves”):
~/PMC4654492/results/sequence/dnaprimer/results.xml”
W3C Annotation
[PREFIX]
[MATCH] (link to target)
[SUFFIX]
CMine structure
plugin
option
DNA double stranded fragment
Wikimedia CC-BY-SA
11. Commonest species in 120 Zika papers
423 Ae./Aedes aegypti
333 Ae./Aedes albopictus
63 Ae. bromeliae
58 Ae. lilii
46 Ae. hensilli
42 Glossina pallidipes
40 Plasmodium vivax
35 Ae. luteocephalus
28 Ae. vittatus
25 Ae. furcifer
22 Plasmodium falciparum
21 Drosophila melanogaster
pre=“fever (DHF), are caused by the world's most prevalent mosquito-borne virus.
37 DENV is carried by " exact="Aedes aegypti” post=" mosquito, which is strongly
affected by ecological and human drivers, but also influenced by clima" name="binomial"/>
12. 183 Wolbachia
70 Aedes
69 Flavivirus/Flaviviridae
30 Glossina
17 Culex
Commonest genera in Zika papers
pre=”…-negative endosymbiotic bacterium, is a promising tool against diseases
transmitted by mosquitoes. " exact="Wolbachia” post=" can be found worldwide in
numerous arthropod species. More than 65% of all insect species are natu…”
Wolbachia in insect cell
Wikimedia CC-BY-SA
13. 38 ITS
20 MHC2TA
19 COI
14 CYPJ92
5 CYP6BB2
4 CYP9J28
3 MHC
Commonest genes in 120 Zika papers
15. CM Future
• Hypothes.is use ContentMine results for annotation
• (with Cambridge Univ Library) extracting daily
scientific facts from open and closed literature.
• with EBI, Cochrane Collaborations, JISC, OKF, LIBER,
TGAC/JohnInnes, DNADigest.
• Running workshops, hackdays.
• Planned outreach: MEPs, EC, Slashdot, Reddit,
Kickstarter, geekdom
• http://contentmine.org (OpenLock non-profit)
16. The Right to Read is the Right to Mine**PeterMurray-Rust, 2011
http://contentmine.org
Editor's Notes
Hi, I’m here to talk about AMI; a data extraction framework and tool. First, I just want highlight some of key contributors to the projects; Andy for his work on the ChemistryVisitor and Peter for the overall architecture.
In this talk, I’m going to impress the importance of data in a specific format and its utility to automated machine processing. Then I’m going to demonstrate AMI’s architecture and the transformation of data as it flows through the process. I’m going to dwell a little on a core format used, Scalable Vector Graphics (SVG) before introducing the concept of visitors, which are pluggable context specific data extractors. Next, I’m going to introduce Andy’s ChemVisitor, for extracting semantic chemistry data, along with a few other visitors that can process non-chemistry specific data. Finally, I will demonstrate some uses of the ChemVisitor, within the realm of validation and metabolism.