The document provides a comprehensive overview of the cms-wave model, developed as part of the Coastal Inlets Research Program by the U.S. Army Corps of Engineers and collaborating universities, to predict spectral wave processes affecting coastal navigation projects. It describes the model's theoretical foundations, numerical implementations, and graphical user interface, as well as demonstrating its applications through various case studies. The report serves as a guide for accurately modeling wave dynamics to support the design and maintenance of coastal structures, contributing to safer and more efficient navigation.