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Chemistry
through the looking glass



Gareth J Rowlands
Massey University
OR
A LAYMAN`S
   GUIDE to
WHY MOLECULES
         or
 BE LEFT or RIGHT
CAN


    HANDED
RDCORE
F OR HA
CHEMISTRY see..
LECTURE NOTES
     AVAILAB LE FROM:
http://www.mass
                ey.ac.nz/~gjrowla
                                 n/teaching.html
HER EG OE S.
“”
“How would you like to live
   in Looking-glass House,
  Kitty? I wonder if they'd
    give you milk, there?
Perhaps Looking-glass milk

                               “”
     isn't good to drink...
             C. S. Lewis
    “Through the Looking-Glass, and
      What Alice Found There”




                                      ©American McGee’s Alice - Electronic Arts
PROBABLY NOT
GOOD FOR KITTY   from PetLvr.com
OH                             OH
  HO                                            OH
                     OH     HO
             O                      O
  HO             OH               OH            OH
         O            OH   HO           O

   HO                                       OH
                 O    OH   HO     O
         lactose                looking-glass
        milk sugar                   milk


THESE MOLECULES
ARE DIFFERENT
OH
HO
                   OH
           O
HO             OH
       O            OH

 HO
               O    OH
       lactose           β-galactosidase
      milk sugar

                              OUR BODIES
                                    will only
                           ACCEPT ONE
why?
NORMALLY




           ©Renaissance Pictures
MIRROR IMAGES   ©Renaissance Pictures
AREID
  RE E
A      NTICAL   ©Renaissance Pictures
BUT
SOMETIMES   ©Renaissance Pictures
THEY ARE   ©Renaissance Pictures
!
DIFFERENT   ©Renaissance Pictures
Buy “If Chins Could
            Kill, Confessions of a
             “B” Movie Actor” by
               Bruce Campbell




        !
DIFFERENT               ©Renaissance Pictures
THATL
2M IRROR         OOK
           THE.SAME. .
             .
 IMAGES         ©Marvel/Sony/Activision
but
               are DIFFERENT




©Marvel/Sony
                 . ARE. .
chiral
W HAT DOES
THIS   ME AN?
LETS LOOK
AT REAL WORLD
THE
OBJECTS
  ARE     3D
EVERY
OBJECT
  HAS .
A
MIRROR
 IMAGE
IF THE MIRROR    IM AGES




                ARE ID ENTICAL. .
THEY   CAN. .
OCCUPY   THE. .
SAME   SPACE
THEY      ARE




SUPE RPOSABLE
IDENITCAL MIRROR IMAGES ARE




    achiral
QUICK
ENGLISH
LESSON
SUPERPOSABLE
          AND
SUPERIMPOSABLE
       are NOT
     th e SAME
ES OF
.EX AMPL
ach   iral
 OBJECTS. .
TENNIS
RACKET




         w ithout writing
COFFEE
                    CUP




without writing
SPOON
SOCKS
BUT
SOME MIRROR                 IM AGES




                                           ARE
© 2005 Krzysztof P. Jasiutowicz
                                    DIFFERENT
SOME MIRROR   IM AGES




                       ARE
                DIFFERENT
THEY       ARE




NON-SUPE RPOSABLE
THEY       ARE




NON-SUPE RPOSABLE
THEY       ARE




NON-SUPE RPOSABLE
THEY       ARE




NON-SUPE RPOSABLE
DOES NOT
MATTER
HOW YOU
TWIST
O R TURN
THEY
   NEVER
    OCCUPY
THHEE SAM
T         E
 SPACE
THEY
   NEVER
    OCCUPY
THHEE SAM
T         E
 SPACE
THEY       ARE




NON-SUPE RPOSABLE
SUCH OBJECTS ARE




chiral
ES OF
.EX AMPL
  chi  ral..
 OBJECTS. .
HANDED
LEFT or
 RIGHT
GOLF CLUBS
CORK SCREW
different...




                         . . .F
                    LEFT or
                     RIGHT      OOTED
©M@nuDia @ Flickr
                                SHOES
chirality
   IN
NATURE
BIN  DWEED
anti-
CLOCKWISE     ©Jeanne Roe @ flickr
HONEYSUCKLE
©red betty black@Flickr
                          CLOCKWISE
TRY
                             RACING 2
                          HONEYSUCKLE
                               VINES
                           TWISTED in
                            OPPOSITE
©red betty black@Flickr    DIREC TIONS
photograph: Willi Rolfes
                           SNAIL SHELLS
RIGHT HANDED
                                 SNAILS
                             ONLY MATE
                                   WITH
                           RIGHT HANDED
                                 SNAILS
photograph: Willi Rolfes
MO    LECULES
CAN BE
  a    chi  ral
O
H           H
    WATER
O      CH 3
H3C              N
      N

          N      N
  O
          CH 3


CAFFEINE
OLECULES
M CAN BE
  ch  iral..
AMINO ACIDS
(S)-(L)-ALANINE



       O
       C       CH3
  HO       C
       H NH2
ENZ YMES




INSULIN
hexamer
DNA




from Rensselaer Polytechnic Institute's Biological Honors Society
WHY
  IS
       IMPORTANT?
THIS
AN achiral OBJECT
AN achiral OBJECT




CAN INTE      WITH BOTH. .
         RACT
MIRROR   IM AGES
.EQUALLY
   WELL
ARE
PRO PERTIES
IDE NTICAL
A
 SPOON
INTERACTS
WITH
 LEFT or HAND
  RIGHT
IDENTICALLY     ©Miramax Films
BUT
A   chiral OBJECT
A    chiral OBJECT




INTERACTS
    DIFFERENTLY WITH EACH. .
MIRROR
 I MAGE


          ©DrStarbuck @ Flickr
THE LEFT SHOE
       ONLY
 FI TS THE
LEFT FOOT


                 ©DrStarbuck @ Flickr
TIGER. WOODS
        USES
RIGHT-HANDED
    CLUBS
         AS HE IS
   RIGHT -HANDED

           ©SportsbookTM
ALTHOUGH
HE CAN PROBABLY
      USE BOTH!




          ©SportsbookTM
M  OLECULES
ARE THE
        SAME..
AN achiral MOLECULE
           O
      Et       H
AN achiral MOLECULE
                        O
                   Et       H



              O                  O
          H                          H
     HO                                  OH
                  OH        HO




CAN INTE      WITH BOTH. .
         RACT
MIRROR                    IMA GES IDENTICALLY
                                     O
                                Et       H
                           O                  O
                       H                          H
                  HO                                  OH
                               OH        HO




         O                                                      O
     H                                                              H
HO               Et                                    Et               OH
             O                                              O
BUT
A   chiral MOLECULE


         OH
A    chiral MOLECULE


               OH




INTERACTS
    DIFFERENTLY WITH EACH. .
MIRROR   IMAGE
         O                      O
     H                              H
HO                                      OH
             OH            HO

                      OH
O
     H                              O
HO                              H
             OH        H   HO
                                        O
                  OH




S LOW REACTION
O
    O                              H
        H                              OH
            OH   H        HO
O
                     OH




FAST REACTION
PROBLEM!
WE ARE   chi ral.
.ENZ YMES &
                                                                                                  PROTEINS
                                                                                                      are
                                                                                                 chiral


Marrero, Mallorquí-Fernández, Guevara, García-Castellanos, Gomis-Rüth, J. Mol. Biol., 2006, 361, 506-521
ONLY ONE
                                                                                                                    H

   MIRROR
                                                                                                      R             N
                                                                                                                                          S
                                                                                                             O

    IMAGE..
                                                                                                                                  N
                                                                                                                    O
                                                                                                                                                  OH
                                                                                                                              O
                                                                                                                      penicillin
                                                                                                                              O
                                                                                                                                                  OH
                                                                                                                    O
                                                                                                             O                    N

                                                                                                                                          S
                                                                                                      R             N
                                                                                                                    H


Marrero et al., J. Mol. Biol., 2006, 361, 506-521 - apologies, this enzyme is involved in β-lactam resistance...so the following is not true...
FITS. .                                                                                   R
                                                                                                             H
                                                                                                             N
                                                                                                                                  S
                                                                                                      O                    N
                                                                                                             O
                                                                                                                                            OH
                                                                                                                               O



                                                                                                                                       O
                                                                                                                                                  OH

                                                                                                             O
                                                                                                                  .(DOES US
                                                                                                                    O
                                                                                                                                  N

                                                                                                      R             N
                                                                                                                    H    ANY              S



                                                                                                                     GOOD)
Marrero et al., J. Mol. Biol., 2006, 361, 506-521 - apologies, this enzyme is involved in β-lactam resistance...so the following is not true...
IMAGINE EACH HAND IS A




           MIRROR IMAGE OF
© 2005 Krzysztof P. Jasiutowicz
                                   A DRUG..
THE
EN ZY ME
I S A GLOVE. .
ONLY ONE.
HAND FITS!
PROBLEM!
TH.E. OTHER HAND
 ..
     MIGHT BE
    UP
    TO NO GOOD!



          ©Dreamworks / WB
TRIVIAL
EXAMPLES
.S ME LL
                                    CH3




                        H
                      H3C
                    (R)-limone
                              ne
                      oranges
           ©Patrick J. Lynch 2006
.S ME LL        . .AND THE
                MIRROR
                 IMAGE
    CH3




        H
       CH 3
           ne
(S)-limone
   lemons
.T ASTE
                   CH3
                               O



                 H
               CH3
          (R)-carvon
                    e
           spearmint
           ©Patrick J. Lynch 2006
.T ASTE           . .AND THE
                  MIRROR
                   IMAGE
       CH 3
O



        H
        H3C
              e
    (S)-carvon
      caraway
THE REAL

©Fir0002@wikimedia commons   PRO BLEM
O                     O
                           H                     H
                     N                               N

             O                                           O
                     O         N   O   O     N       O
                               H             H

    (R)- thalidomide                       (S)-thalidomide
        combats                                       causes
                                             birth defects
    morning sickness



©Trois Têtes (TT)@Flickr
. MANY E XAMPLES



                  Et                       OH   OH                 Et
                                  H                    H
                                  N                    N
                        N                                      N
                        H                                      H
            OH                        Et             Et               OH
                  Ethambutol                         (R,R)-enantiomer
            tuberculostatic (anti-TB)                causes blindness
©Brookhaven National Laboratory
. MANY E XAMPLES


           Me                   Me
                 NMe2   Me2N

       O Ph                     Ph O
            O                   O
      Et                             Et
       novrad                   darvon
  cough-suppressant            painkiller
.see what
                        they did with
                         the names?
         Me                   Me
               NMe2   Me2N

     O Ph                     Ph O
          O                   O
    Et                             Et
     novrad                   darvon
cough-suppressant            painkiller
.who said
                          scientists
                         have not got
         Me
                            a sense
                              Me


                           of humour?
               NMe2   Me2N

     O Ph                     Ph O
          O                   O
    Et                             Et
     novrad                   darvon
cough-suppressant            painkiller
“”
“How would you like to live
   in Looking-glass House,
  Kitty? I wonder if they'd
    give you milk, there?
Perhaps Looking-glass milk

                               “”
     isn't good to drink...
             C. S. Lewis
    “Through the Looking-Glass, and
      What Alice Found There”




                                      ©American McGee’s Alice - Electronic Arts
KITTY.
SHOULD
     NOT
 DRINK IT!   from PetLvr.com
gareth
        (Dr. GJ Rowlands)

              thanks

          www.massey.ac.nz/~gjrowlan
these slides were prepared whilst listening to
                                             the national

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Chemistry through the looking glass