This document discusses the challenges of surveying the deep sea using acoustic remote sensing and remotely operated vehicles (ROVs). Obtaining high resolution data at fine spatial scales is difficult due to issues with positioning systems on ROVs and the cumulative errors from different positioning sources. Precisely co-registering ROV-collected multibeam bathymetry, video, and motion data is challenging due to errors from the vessel's GPS, acoustic positioning of the ROV, uncertainties in the ROV's configuration, platform motion, timing synchronization between datasets, and data logging frequency. Overcoming these errors is important for mapping seafloor habitats and distributions of biological species at fine spatial scales.