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Cell Biology
Outline
• Cell Structure and Organelles
• Cell Molecular Components
• Water and Chemical properties
• Cell Membrane
• Osmotic Properties of cells
• Cell molecule transportation
Prokaryotes and Eukaryotes
Structure of
Animal Cells
Cell Organelles
• Nucleus
– 1 Nuclear envelope
– Chromatin and DNA
– Nucleolus
• Mitochondria
– Double membrane
– Mitochondrial (maternal) DNA
– “Power House” of the cell
• Food converted into energy
– Adenosine triphosphate (ATP)
• Consumes Oxygen, produces CO2
What is ATP?
• Nucleotides
– “Carry” chemical
energy from easily
hydrolyzed
phosphoanhydride
bonds
• Combine to form coenzymes (coenzyme A (CoA)
• Used as signaling molecules (cyclic AMP)
Cell Organelles
• Endoplasmic Reticulum
– Site where cell membrane and
exported material is made
– Ribosomes (rough)
• Make protiens
• Smooth ER- lipids
• Golgi Apparatus
– Receives and modifies
– Directs new materials
• Lysosomes
– Intracellular digestion
– Releases nutrients
– Breakdown of waste
Cell Organelles
• Peroxisomes
– Hydrogen Peroxide generated and degraded
• Cytosol
– Water based gel
– Chemical reactions
• Cytoskeleton
– Filaments (actin, intermediate and microtubules)
– Movement of organelles and cell
– Structure/strengthen cell
• Vessicles
– Material transport
– Membrane, ER, Golgi derived vessicles
Organic Molecules of Cells
• Proteins
• Carbohydrates
• Lipids
• Nucleic acids
Proteins
• Most diverse and complex macromolecules
in the cell
• Used for structure, function and information
• Made of linearly arranged amino acid
residues
– “folded” up with “active” regions
Types of Proteins
1) Enzymes – catalyzes covalent bond breakage or
formation
2) Structural – collagen, elastin, keratin, etc.
3) Motility – actin, myosin, tubulin, etc.
4) Regulatory – bind to DNA to switch genes on or off
5) Storage – ovalbumin, casein, etc.
6) Hormonal – insulin, nerve growth factor (NGF), etc.
7) Receptors – hormone and neurotransmitter receptors
8) Transport – carries small molecules or irons
9) Special purpose proteins – green fluorescent protein, etc.
Humans have
around 30,000
genes.
Each cell has
the full set of the
human genes
but only makes
specific protein.
Why?
Implication in
tissue
engineering
• Hydrophobic molecules
– Energy storage, membrane components,
signal molecules
– Triglycerides (fat), phospholipids, waxes,
sterols
Lipids
• Sugars, storage (glycogen, starch), Structural
polymers (cellulose and chitin)
• Major substrates of energy metabolism
Carbohydrates
Nucleic Acids
• DNA
(deoxyribonucleic
acid) and RNA
encode genetic
information for
synthesis of all
proteins
• Blue print
Water Molecule
• Polarity of H2O allows H bonding
• Water disassociates into H+
and
OH-
• Imbalance of H+
and OH-
give rise
to “acids and bases”
- Measured by the pH
• pH influence charges of amino
acid groups on protein, causing a
specific activity
• Buffering systems maintain
intracellular and extracellular pH
• Hydrophobic “Water-fearing”
– Molecule is not polar, cannot form H bonds
and is “repelled” from water
– Insoluble
• Hydrophillic “Water-loving”
– Molecule is polar, forms H bonds with water
– Soluble
Water Molecule
Cell Membrane
Cell Membrane Composition
• Plasma membrane encloses cell and cell
organelles
• Made of hydrophobic and hydrophillic
components
– Semi-permeable and fluid-like
– “lipid bilayer”
• Integral proteins interact with “lipid bilayer”
– Passive transport pores and channels
– Active transport pumps and carriers
– Membrane-linked enzymes, receptors and
transducers
• Sterols stabilize the lipid bilayer
– Cholesterol
Cell Membrane Composition
Lipid Molecules
• Osmosis (Greek, osmos “to push”)
– Movement of water down its concentration
gradient
• Hydrostatic pressure
– Movement of water causes fluid mechanical
pressure
– Pressure gradient across a semi-permeable
membrane
Osmotic Properties of Cells
Hydrostatic Pressure
Donnan Equilibrium
Semi-permeable
membrane
Deionized waterAdd Ions
Balanced charges among
both sides
Add anion
More Cl-
leaves I to
balance charges
Donnan Equilibrium
Diffusion
Ionic Steady State
• Potaasium cations
most abundant
inside the cell
• Chloride anions
ions most abundant
outside the cell
• Sodium cations
most abundant
outside the cell
Donnan Equilibrium
[K+
]i
K+
A- Na+
Ca2+ Na+
Na+K+
K+
Cl-
A- A- A-
[K+
]ii
[Cl-
]ii
[Cl-
]i
=
Erythrocyte Cell
Equilibrium
•No osmotic pressure
- cell is in an isotonic solution
- Water does not cross
membrane
•Increased [Osmotic] in cytoplasm
- cell is in an hypotonic solution
- Water enters cell, swelling
•Decreased [Osmotic] in cytoplasm
- cell is in an hypotonic solution
- Water leaves cell, shrinking
Cell Lysis
• Using hypotonic
solution
• Or interfering with
Na+
equilibrium
causes cells to burst
• This can be used to
researchers’
advantage when
isolating cells
Molecules Related to Cell
Permeability
• Depends on
– Molecules size (electrolytes more
permeable)
– Polarity (hydrophillic)
– Charge (anion vs. cation)
– Water vs. lipid solubility
Cell Permeability
• Passive transport is carrier mediated
– Facilitated diffusion
– Solute molecule combines with a “carrier” or
transporter
– Electrochemical gradients determines the
direction
– Integral membrane proteins form channels
Crossing the Membrane
• Simple or passive diffusion
• Passive transport
– Channels or pores
• Facilitated transport
– Assisted by membrane-floating proteins
• Active transport pumps and carriers
– ATP is required
– Enzymes and reactions may be required
Modes of Transport
Carrier-Mediated Transport
• Integral protein binds to the solute and undergo
a conformational change to transport the solute
across the membrane
Channel Mediated Transport
• Proteins form aqueous pores allowing specific
solutes to pass across the membrane
• Allow much faster transport than carrier proteins
Coupled Transport
• Some solutes “go along for the ride” with a
carrier protien or an ionophore
Can also be a Channel
coupled transport
• Three main mechanisms:
– coupled carriers: a solute is
driven uphill compensated
by a different solute being
transported downhill
(secondary)
– ATP-driven pump: uphill
transport is powered by ATP
hydrolysis (primary)
– Light-driven pump: uphill
transport is powered by
energy from photons
(bacteriorhodopsin)
Active Transport
Active Transport
• Energy is required
•Against their
electrochemical
gradients
•For every 3 ATP,
3 Na+
out, 2 K+
in
Na+
/K+
Pump
• Actively transport Na+
out of the cell and K+
into the cell
• Na+
exchange
(symport) is
also used in
epithelial cells
in the gut to
drive the
absorption of
glucose from
the lumen, and
eventually into
the
bloodstream
(by passive
transport)
Na+
/K+
Pump
• About 1/3 of ATP in an animal cell is used to
power sodium-potassium pumps
Na+
/K+
Pump
• In electrically active nerve
cells, which use Na+
and K+
gradients to propagate
electrical signals, up to 2/3 of
the ATP is used to power
these pumps
Endocytosis and Exocytosis
• Exocytosis
- membrane vesicle fuses with cell
membrane, releases enclosed material to
extracellular space.
• Endocytosis
- cell membrane invaginates, pinches in,
creates vesicle enclosing contents
Receptor Mediated Endocytosis
The Cytoskeleton
• The cytoskeleton, a component of structural
functions, is critical to cell motility.
• Cells have three types of filaments that are
distinguishable by the diameter.
• Actin filaments (microfilaments): 5-9 nm
diameter with twisted strands.
Microtubules: hollow
tube-like structure
~ 24 nm diameter
Intermediate Filaments: 9-nm diameter
Cell Locomotion
Why do we care about cell
locomotion?
Host defense
Angiogenesis
Wound healing
Cancer metastasis
Tissue engineering
Steps:
Protrusion
Adhesion
Traction
• External signals must dictate the direction of cell
migration.
• Cell migration is initiated by the formation of large
membrane protrusion.
• Video microscopy showed that G-actin
polymerizes to F-actin. (Drugs can alter this
process).
• Actin exists as a globular monomer (G-actin) and;
A filamentous polymer (F-actin) protein.
• The addition of Mg2+
, K+
or Na+
to a solution of G-
actin induces the formation of F-actin and this
process is reversible.
• Elastic mechanical property of actin filament.
Cell biology

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Cell biology

  • 2. Outline • Cell Structure and Organelles • Cell Molecular Components • Water and Chemical properties • Cell Membrane • Osmotic Properties of cells • Cell molecule transportation
  • 5. Cell Organelles • Nucleus – 1 Nuclear envelope – Chromatin and DNA – Nucleolus • Mitochondria – Double membrane – Mitochondrial (maternal) DNA – “Power House” of the cell • Food converted into energy – Adenosine triphosphate (ATP) • Consumes Oxygen, produces CO2
  • 6. What is ATP? • Nucleotides – “Carry” chemical energy from easily hydrolyzed phosphoanhydride bonds • Combine to form coenzymes (coenzyme A (CoA) • Used as signaling molecules (cyclic AMP)
  • 7. Cell Organelles • Endoplasmic Reticulum – Site where cell membrane and exported material is made – Ribosomes (rough) • Make protiens • Smooth ER- lipids • Golgi Apparatus – Receives and modifies – Directs new materials • Lysosomes – Intracellular digestion – Releases nutrients – Breakdown of waste
  • 8. Cell Organelles • Peroxisomes – Hydrogen Peroxide generated and degraded • Cytosol – Water based gel – Chemical reactions • Cytoskeleton – Filaments (actin, intermediate and microtubules) – Movement of organelles and cell – Structure/strengthen cell • Vessicles – Material transport – Membrane, ER, Golgi derived vessicles
  • 9. Organic Molecules of Cells • Proteins • Carbohydrates • Lipids • Nucleic acids
  • 10. Proteins • Most diverse and complex macromolecules in the cell • Used for structure, function and information • Made of linearly arranged amino acid residues – “folded” up with “active” regions
  • 11. Types of Proteins 1) Enzymes – catalyzes covalent bond breakage or formation 2) Structural – collagen, elastin, keratin, etc. 3) Motility – actin, myosin, tubulin, etc. 4) Regulatory – bind to DNA to switch genes on or off 5) Storage – ovalbumin, casein, etc. 6) Hormonal – insulin, nerve growth factor (NGF), etc. 7) Receptors – hormone and neurotransmitter receptors 8) Transport – carries small molecules or irons 9) Special purpose proteins – green fluorescent protein, etc.
  • 12.
  • 13. Humans have around 30,000 genes. Each cell has the full set of the human genes but only makes specific protein. Why? Implication in tissue engineering
  • 14. • Hydrophobic molecules – Energy storage, membrane components, signal molecules – Triglycerides (fat), phospholipids, waxes, sterols Lipids • Sugars, storage (glycogen, starch), Structural polymers (cellulose and chitin) • Major substrates of energy metabolism Carbohydrates
  • 15. Nucleic Acids • DNA (deoxyribonucleic acid) and RNA encode genetic information for synthesis of all proteins • Blue print
  • 16. Water Molecule • Polarity of H2O allows H bonding • Water disassociates into H+ and OH- • Imbalance of H+ and OH- give rise to “acids and bases” - Measured by the pH • pH influence charges of amino acid groups on protein, causing a specific activity • Buffering systems maintain intracellular and extracellular pH
  • 17. • Hydrophobic “Water-fearing” – Molecule is not polar, cannot form H bonds and is “repelled” from water – Insoluble • Hydrophillic “Water-loving” – Molecule is polar, forms H bonds with water – Soluble Water Molecule
  • 19. Cell Membrane Composition • Plasma membrane encloses cell and cell organelles • Made of hydrophobic and hydrophillic components – Semi-permeable and fluid-like – “lipid bilayer”
  • 20. • Integral proteins interact with “lipid bilayer” – Passive transport pores and channels – Active transport pumps and carriers – Membrane-linked enzymes, receptors and transducers • Sterols stabilize the lipid bilayer – Cholesterol Cell Membrane Composition
  • 21.
  • 23.
  • 24.
  • 25. • Osmosis (Greek, osmos “to push”) – Movement of water down its concentration gradient • Hydrostatic pressure – Movement of water causes fluid mechanical pressure – Pressure gradient across a semi-permeable membrane Osmotic Properties of Cells
  • 27. Donnan Equilibrium Semi-permeable membrane Deionized waterAdd Ions Balanced charges among both sides
  • 28. Add anion More Cl- leaves I to balance charges Donnan Equilibrium Diffusion
  • 29. Ionic Steady State • Potaasium cations most abundant inside the cell • Chloride anions ions most abundant outside the cell • Sodium cations most abundant outside the cell
  • 30. Donnan Equilibrium [K+ ]i K+ A- Na+ Ca2+ Na+ Na+K+ K+ Cl- A- A- A- [K+ ]ii [Cl- ]ii [Cl- ]i =
  • 31. Erythrocyte Cell Equilibrium •No osmotic pressure - cell is in an isotonic solution - Water does not cross membrane •Increased [Osmotic] in cytoplasm - cell is in an hypotonic solution - Water enters cell, swelling •Decreased [Osmotic] in cytoplasm - cell is in an hypotonic solution - Water leaves cell, shrinking
  • 32. Cell Lysis • Using hypotonic solution • Or interfering with Na+ equilibrium causes cells to burst • This can be used to researchers’ advantage when isolating cells
  • 33. Molecules Related to Cell Permeability • Depends on – Molecules size (electrolytes more permeable) – Polarity (hydrophillic) – Charge (anion vs. cation) – Water vs. lipid solubility
  • 34. Cell Permeability • Passive transport is carrier mediated – Facilitated diffusion – Solute molecule combines with a “carrier” or transporter – Electrochemical gradients determines the direction – Integral membrane proteins form channels
  • 35. Crossing the Membrane • Simple or passive diffusion • Passive transport – Channels or pores • Facilitated transport – Assisted by membrane-floating proteins • Active transport pumps and carriers – ATP is required – Enzymes and reactions may be required
  • 37. Carrier-Mediated Transport • Integral protein binds to the solute and undergo a conformational change to transport the solute across the membrane
  • 38. Channel Mediated Transport • Proteins form aqueous pores allowing specific solutes to pass across the membrane • Allow much faster transport than carrier proteins
  • 39. Coupled Transport • Some solutes “go along for the ride” with a carrier protien or an ionophore Can also be a Channel coupled transport
  • 40. • Three main mechanisms: – coupled carriers: a solute is driven uphill compensated by a different solute being transported downhill (secondary) – ATP-driven pump: uphill transport is powered by ATP hydrolysis (primary) – Light-driven pump: uphill transport is powered by energy from photons (bacteriorhodopsin) Active Transport
  • 42. •Against their electrochemical gradients •For every 3 ATP, 3 Na+ out, 2 K+ in Na+ /K+ Pump • Actively transport Na+ out of the cell and K+ into the cell
  • 43. • Na+ exchange (symport) is also used in epithelial cells in the gut to drive the absorption of glucose from the lumen, and eventually into the bloodstream (by passive transport) Na+ /K+ Pump
  • 44.
  • 45. • About 1/3 of ATP in an animal cell is used to power sodium-potassium pumps Na+ /K+ Pump • In electrically active nerve cells, which use Na+ and K+ gradients to propagate electrical signals, up to 2/3 of the ATP is used to power these pumps
  • 46. Endocytosis and Exocytosis • Exocytosis - membrane vesicle fuses with cell membrane, releases enclosed material to extracellular space. • Endocytosis - cell membrane invaginates, pinches in, creates vesicle enclosing contents
  • 48. The Cytoskeleton • The cytoskeleton, a component of structural functions, is critical to cell motility. • Cells have three types of filaments that are distinguishable by the diameter. • Actin filaments (microfilaments): 5-9 nm diameter with twisted strands.
  • 49. Microtubules: hollow tube-like structure ~ 24 nm diameter Intermediate Filaments: 9-nm diameter
  • 50. Cell Locomotion Why do we care about cell locomotion? Host defense Angiogenesis Wound healing Cancer metastasis Tissue engineering Steps: Protrusion Adhesion Traction
  • 51. • External signals must dictate the direction of cell migration. • Cell migration is initiated by the formation of large membrane protrusion. • Video microscopy showed that G-actin polymerizes to F-actin. (Drugs can alter this process). • Actin exists as a globular monomer (G-actin) and; A filamentous polymer (F-actin) protein. • The addition of Mg2+ , K+ or Na+ to a solution of G- actin induces the formation of F-actin and this process is reversible. • Elastic mechanical property of actin filament.