Prolonged exposure to ultraviolet radiation (UVR) from the sun has negative effects on DNA and can also damage amino acids and proteins. To protect themselves against UVR, marine organisms possess UV-absorbing compounds called mycosporine-like amino acids (MAAs). Currently, there are no commercial standards of MAAs available. However, it is possible to isolate MAAs from methanol extractions of marine organisms using high-performance liquid chromatography (HPLC). Over the course of several months, HPLC was successfully used to isolate MAAs from the Rhodophyta (red algae) species of Iridaea cordata, Gigartina papillata, Mastocarpus papillatus, and Mazzaella splendens. In addition, co-chromatography was used to identify common compounds between different red algae. Although inadequate storage methods lead to MAA breakdown following isolation, the work spent making the HPLC operational and calculating the collection windows will make future MAA isolation a simple matter of repeating procedures. Future implications of this research include scaling up MAA isolation through preparative HPLC in addition to analysis by mass spectrometry.