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COGNITIVE
SCIENCE
107A
Motor Systems:
Basal Ganglia
Jaime A. Pineda, Ph.D.
Two major descending pathways
Pyramidal vs. extrapyramidal	

Striated muscles	

Lower motor neurons	

(brain stem and spinal cord)	

Brain stem 	

centers	

Motor cortex	

Pyramidal	

system	

 Extrapyramidal	

system	

•  Pathway for
voluntary movement	

•  Most fibers originate
in motor cortex (BA
46)	

•  Most fibers cross to
contralateral side at
the medulla	

•  Pathways for postural
control/certain reflex
movement	

•  Originates in brainstem	

•  Fibers do not cross	

•  Cortex can influence
this system via inputs to
brain stem
In order to generate voluntary movement many
components are necessary:
1)  A representation of the actual position of the body
segments (current program)….. somatosensory systems
2) A representation of the desired position of the body
segments in time (model program).....cortex
3) Error correction system: A spatial and temporal motor plan
for achieving 2) starting from 1)….cerebellum
4) Gating system: Initiating, monitoring and maintaining the
appropriate movement…..basal ganglia
Cortical Motor System	

Primary motor cortex	

Execution of movement	

• Somatotopically organized	

• Massive descending projections to spinal
cord	

• Damage = pronounced weakness in
affected body parts	

• Stimulation = simple mov’t in small
muscle groups
Somatotopy in M1
Cortical Motor System	

Pre-motor cortex	

Movement planning/sequencing	

• Many projections to M1	

• But also many projections directly into
pyramidal tract	

• Damage = more complex motor
coordination deficits; anogsonosia (loss of
awareness)	

• Stimulation = more complex mov’t	

• Two distinct somatotopically organized
subregions	

•  SMA (dorso-medial)	

• May be more involved in
internally generated movement	

(anti-mirror neurons)	

•  Lateral pre-motor	

• May be more involved in
externally guided movement	

(mirror neurons)	

Area 8 – frontal eye fields
These various motor areas execute different tasks relative to motor learning:
Supplementary motor area initiates learning
Premotor area starts a learnt motor program
Primary motor cortex coordinates the details of the movement
Cortical Motor System	

Posterior parietal cortex (PPC)	

Sensory guidance of movement	

• Many projections to pre-motor cortex	

• But also many projections directly into
pyramidal tract	

• Damage can cause deficits in visually
guided reaching (Balint’s syndrome) and/
or apraxia	

• Likely part of the dorsal visual stream	

Areas 5, 7 – visuo-motor integration
Subcortical Motor System:
Basal Ganglia
or neostriatum	

(STN)	

(internal/external)	

(pars compacta,	

pars reticulata	

[input]	

[input]	

Cortex	

[output]	

[output]
Subcortical Motor System:
Basal Ganglia
BG is a basic release circuit that works through disinhibition
to translate perception and cognition into action
VA – BG input; 	

VL – cerebellum input
Basal Ganglia Functions	

•  Motor planning, sequencing, learning, maintenance	

•  Rule-based and habit (reinforcement) learning 	

•  Braking function: inhibit undesired movement and permit
desired ones	

•  Predictive control	

•  Working memory	

•  Attention	

•  Switches in behavioral set
Motor Cortex-Basal Ganglia-Cerebellum
Circuit	

Cortex	

Striatum	

Thalamus	

GPe	

STN	

GPi/SNr	

excitatory	

inhibitory	

Direct 	

pathway	

Indirect 	

pathway	

M1, PM	

SMA	

Cerebellum	

Somatosensory	

systems
MEDIUM SPINY NEURON
•  95% of neurons in BG
•  Bistable Vm (-85 and -60 mV)
•  Context-dependent firing
•  Phasically active
•  Divided into those with D1/D2
receptors
•  Use GABA+neuropeptides
DA binding to D1 depolarizes
binding to D2 inhibits
D1 cells form direct pathway
D2 cells form indirect pathway
caudate / putamen
• Striatum: caudate - putamen
• 80-95% medium spiny neurons
• GABAergic; ~ 0.1 - 1 Hz rate
• Receives vast majority of BG input
• cortical
• excitatory (glutamatergic)
• 2 types of medium spiny cells
• Those expressing D1 receptors
• Excited by DA
• contain dynorphin/Subst P
• send to GPi  SNpr
(direct)
• Those expressing D2 receptors
• Inhibited by DA
• contain enkephalin
• send to Gpe (indirect)
CORTEX
GPi
SNpr
Striatum
+	

D1	

 D2	

Direct	

 Indirect	

_
Basal Ganglia Circuit	

Cortex	

Striatum	

Thalamus	

GPe	

STN	

GPi/SNr	

excitatory	

inhibitory	

Direct 	

pathway	

Indirect 	

pathway	

M1, PM	

SMA	

SNc	

Hyperdirect	

pathway
Basal Ganglia Circuit	

Cortex	

Striatum	

Thalamus	

GPe	

STN	

GPi/SNr	

excitatory	

inhibitory	

Direct 	

pathway	

Indirect 	

pathway	

M1, PM	

SMA	

SNc	

Hyperdirect	

pathway
Patches or striosomes
Matrix or matrisomes
• ACh: striosomes
• gets limbic input
• sends to SNpc
• GABA: matrisomes
• gets most cortical
input
• sends to GPi and
SNpr
Limbic areas
Sensorimotor
association areas
striasomes	

matrisomes
caudate / putamen
CORTEX
GPi
SNpr
SC
Thalamus
GPe
STN
• GPi (Globus Pallidus internal)
• Major BG output for limb movement
• DIRECT pathway from striatum
• (striatopallidal pathway)
• Also receives STN input
• excitatory
• contacts many neurons
• 10-15ms faster than striatum
• GABA output to thalamus  brain stem
• SNpr (Substantia Nigra pars reticulata)
• Major BG output for eye movement
• Also gets striatum  STN input
• SNpr projects to SC to control eye
movements
Direct
caudate / putamen
CORTEX
GPi
SNpr
SC
Thalamus
GPe
STN
SNpc
• GPe (Globus Pallidus external)
• Much like internal segment:
• Gets striatum  STN input
• Sends output to STN
• Striatum → GPe → STN →
GPi → Thalamus
• INDIRECT striatopallidal
pathway
Indirect 	

Direct
caudate / putamen
CORTEX
GPi
SNpr
SC
Thalamus
GPe
STN
SNpc+	

 +	

-	

-	

-	

-	

+	

+	

+
Direct	

Indirect	

• SNpc (Substantia Nigra pars compacta)
• Most studied structure in the basal
ganglia
• Large DAergic cells
• Receives inhibitory input from
striasomes in striatum
• Sends DAergic output to same/adjacent
striatal areas
• DA action (inhibitory/excitatory)
depends on striatal receptors.
• D1 receptors excite
• D2 receptors inhibit
caudate / putamen
CORTEX
GPi
SNpr
SC
Thalamus
GPe
STN
SNpc+	

 +	

-	

-	

-	

-	

+	

+	

+
Direct	

Indirect	

Hyperdirect
Basal Ganglia Circuit	

Cortex	

Striatum	

Thalamus	

GPe	

STN	

GPi/SNr	

excitatory	

inhibitory	

Direct 	

pathway	

Indirect 	

pathway	

• Striatum receives input from
cortical areas 	

• inputs are roughly topographical
(multiple parallel circuits)	

• GPi/SNr are the major output
nuclei 	

• Output is inhibitory	

• Gpi/SNr neurons have high
baseline firing rates (baseline =
inhibition)	

• Gpi/SNr input from the striatum
is focal and inhibitory, whereas
input from the STN is diffuse and
excitatory	

• Direct vs. indirect striatal
pathways have opposing effects
(inhib. vs. excit.)	

• Output of thalamus is primary
to motor areas	

M1, PM	

SMA	

SNc	

Hyperdirect	

pathway
Malfunctioning of basal ganglia
induces dramatic abnormalities in
voluntary movement.
Basal ganglia coordinates movement
indirectly, by receiving information
from motor cortex and re-sending
back to the motor cortex processed
information through the thalamus.
Basal Ganglia Circuit	

Cortex	

Striatum	

Thalamus	

GPe	

STN	

GPi/SNr	

excitatory	

inhibitory	

Direct 	

pathway	

Indirect 	

pathway	

M1, PM	

SMA	

SNc	

Hyperdirect	

pathway	

 D2	

 D1 (+)	

Indirect	

 Direct	

(-)	

(bias is to maintain	

thalamic channels	

opened and info 	

flowing to cortex)
Parkinson’s Disease	

•  Etiology	

–  Adult onset, thought to be
genetic without 100%
penetrance.	

–  One hypothesis is that it
results from a genetic
susceptibility to an
environmental factor.	

•  Loss of DA input to
striatum from SNpc	

•  Loss must involve over
90% of cells before
symptoms appear.
Parkinson’s Disease: 
Clinical Symptoms	

•  Motor	

–  Tremor	

–  Cogwheel rigidity	

–  Shuffling steps	

–  Akinesia	

–  Bradykinesia	

–  Dystonia	

•  Non-motor	

–  Cognitive slowing 	

–  Difficulty with tasks
requiring high level
processing	

–  Depression	

Akinesia: Difficulty beginning or maintaining a body motion
Bradykinesia: Slowness of movement; paucity or incompleteness of movement
Dystonia: Sustained involuntary muscle contractions and spasms
Parkinson’s Disease (Hypokinetic Movement)	

Cortex	

Striatum	

Thalamus	

GPe	

STN	

GPi/SNr	

excitatory	

inhibitory	

Direct 	

pathway	

Indirect 	

pathway	

• Decreased output of SNc
dopaminergic projections	

• Decrease excitation in direct
pathway	

• Increase inhibition in indirect
pathway	

• Net effect: more inhibition of
thalamus and therefore less
excitatory input to motor cortex	

M1, PM	

SMA	

SNc	

D2	

 D1 (+)	

Indirect	

 Direct	

(-)
Parkinson’s Disease: 
Treatment	

•  L-DOPA (taken up by DA terminals in the striatum);
converted to DA and then released.	

–  Not effective for long-term treatment	

–  Patients develop a tolerance to it	

–  Has many side effects (honeymoon period 3-5 years)	

•  Transplantation of fetal tissue	

•  Pallidotomy (cells in the posteroventral GPi are surgically
ablated either unilaterally or bilaterally	

•  Deep Brain Stimulation (DBS): a surgical treatment
involving the implantation of a brain pacemaker, which
sends electrical impulses to brain.
DBS	

DBS leads are placed in the brain according to
the type of symptoms to be addressed. 	

For essential tremor and Parkinsonian
tremors, the lead is placed in the thalamus.	

For symptoms associated with Parkinson's
disease (rigidity, bradykinesia/akinesia and
tremor), the lead may be placed in either the
globus pallidus or subthalamic nucleus.
Huntington’s Disease (Hyperkinetic
Movement)	

Cortex	

Striatum	

Thalamus	

GPe	

STN	

GPi/SNr	

excitatory	

inhibitory	

Direct 	

pathway	

Indirect 	

pathway	

• Cell loss in the striatum that
seems to affect the indirect
pathway disproportionately	

• Net effect: less inhibition of the
thalamus and therefore
excessive excitation of motor
cortex	

M1, PM	

SMA	

SNc
Subcortical Motor System:
Basal Ganglia	

So what is the basal ganglia circuit
doing?	

• The “Brake” hypothesis	

B.G. essentially acts like a brake
to prevent unwanted movement.	

•  Excitation of STN via motor input
leads to diffuse increase in
inhibition.	

•  Excitation of the striatum in one
motor circuit decreasing this
inhibition focally thus “releasing the
brake” for the selected movement.	

Cortex	

Striatum	

Thalamus	

GPe	

STN	

GPi/SNr	

excitatory	

inhibitory	

Direct 	

pathway	

Indirect 	

pathway	

M1, PM	

SMA	

SNc

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Basal ganglia

  • 2. Two major descending pathways Pyramidal vs. extrapyramidal Striated muscles Lower motor neurons (brain stem and spinal cord) Brain stem centers Motor cortex Pyramidal system Extrapyramidal system •  Pathway for voluntary movement •  Most fibers originate in motor cortex (BA 46) •  Most fibers cross to contralateral side at the medulla •  Pathways for postural control/certain reflex movement •  Originates in brainstem •  Fibers do not cross •  Cortex can influence this system via inputs to brain stem
  • 3. In order to generate voluntary movement many components are necessary: 1)  A representation of the actual position of the body segments (current program)….. somatosensory systems 2) A representation of the desired position of the body segments in time (model program).....cortex 3) Error correction system: A spatial and temporal motor plan for achieving 2) starting from 1)….cerebellum 4) Gating system: Initiating, monitoring and maintaining the appropriate movement…..basal ganglia
  • 4. Cortical Motor System Primary motor cortex Execution of movement • Somatotopically organized • Massive descending projections to spinal cord • Damage = pronounced weakness in affected body parts • Stimulation = simple mov’t in small muscle groups
  • 6. Cortical Motor System Pre-motor cortex Movement planning/sequencing • Many projections to M1 • But also many projections directly into pyramidal tract • Damage = more complex motor coordination deficits; anogsonosia (loss of awareness) • Stimulation = more complex mov’t • Two distinct somatotopically organized subregions •  SMA (dorso-medial) • May be more involved in internally generated movement (anti-mirror neurons) •  Lateral pre-motor • May be more involved in externally guided movement (mirror neurons) Area 8 – frontal eye fields
  • 7. These various motor areas execute different tasks relative to motor learning: Supplementary motor area initiates learning Premotor area starts a learnt motor program Primary motor cortex coordinates the details of the movement
  • 8. Cortical Motor System Posterior parietal cortex (PPC) Sensory guidance of movement • Many projections to pre-motor cortex • But also many projections directly into pyramidal tract • Damage can cause deficits in visually guided reaching (Balint’s syndrome) and/ or apraxia • Likely part of the dorsal visual stream Areas 5, 7 – visuo-motor integration
  • 9. Subcortical Motor System: Basal Ganglia or neostriatum (STN) (internal/external) (pars compacta, pars reticulata [input] [input] Cortex [output] [output]
  • 11.
  • 12. BG is a basic release circuit that works through disinhibition to translate perception and cognition into action VA – BG input; VL – cerebellum input
  • 13. Basal Ganglia Functions •  Motor planning, sequencing, learning, maintenance •  Rule-based and habit (reinforcement) learning •  Braking function: inhibit undesired movement and permit desired ones •  Predictive control •  Working memory •  Attention •  Switches in behavioral set
  • 15.
  • 16. MEDIUM SPINY NEURON •  95% of neurons in BG •  Bistable Vm (-85 and -60 mV) •  Context-dependent firing •  Phasically active •  Divided into those with D1/D2 receptors •  Use GABA+neuropeptides DA binding to D1 depolarizes binding to D2 inhibits D1 cells form direct pathway D2 cells form indirect pathway
  • 17. caudate / putamen • Striatum: caudate - putamen • 80-95% medium spiny neurons • GABAergic; ~ 0.1 - 1 Hz rate • Receives vast majority of BG input • cortical • excitatory (glutamatergic) • 2 types of medium spiny cells • Those expressing D1 receptors • Excited by DA • contain dynorphin/Subst P • send to GPi SNpr (direct) • Those expressing D2 receptors • Inhibited by DA • contain enkephalin • send to Gpe (indirect) CORTEX GPi SNpr Striatum + D1 D2 Direct Indirect _
  • 18. Basal Ganglia Circuit Cortex Striatum Thalamus GPe STN GPi/SNr excitatory inhibitory Direct pathway Indirect pathway M1, PM SMA SNc Hyperdirect pathway
  • 19. Basal Ganglia Circuit Cortex Striatum Thalamus GPe STN GPi/SNr excitatory inhibitory Direct pathway Indirect pathway M1, PM SMA SNc Hyperdirect pathway
  • 20.
  • 21. Patches or striosomes Matrix or matrisomes • ACh: striosomes • gets limbic input • sends to SNpc • GABA: matrisomes • gets most cortical input • sends to GPi and SNpr
  • 23. caudate / putamen CORTEX GPi SNpr SC Thalamus GPe STN • GPi (Globus Pallidus internal) • Major BG output for limb movement • DIRECT pathway from striatum • (striatopallidal pathway) • Also receives STN input • excitatory • contacts many neurons • 10-15ms faster than striatum • GABA output to thalamus brain stem • SNpr (Substantia Nigra pars reticulata) • Major BG output for eye movement • Also gets striatum STN input • SNpr projects to SC to control eye movements Direct
  • 24. caudate / putamen CORTEX GPi SNpr SC Thalamus GPe STN SNpc • GPe (Globus Pallidus external) • Much like internal segment: • Gets striatum STN input • Sends output to STN • Striatum → GPe → STN → GPi → Thalamus • INDIRECT striatopallidal pathway Indirect Direct
  • 25. caudate / putamen CORTEX GPi SNpr SC Thalamus GPe STN SNpc+ + - - - - + + + Direct Indirect • SNpc (Substantia Nigra pars compacta) • Most studied structure in the basal ganglia • Large DAergic cells • Receives inhibitory input from striasomes in striatum • Sends DAergic output to same/adjacent striatal areas • DA action (inhibitory/excitatory) depends on striatal receptors. • D1 receptors excite • D2 receptors inhibit
  • 26. caudate / putamen CORTEX GPi SNpr SC Thalamus GPe STN SNpc+ + - - - - + + + Direct Indirect Hyperdirect
  • 27. Basal Ganglia Circuit Cortex Striatum Thalamus GPe STN GPi/SNr excitatory inhibitory Direct pathway Indirect pathway • Striatum receives input from cortical areas • inputs are roughly topographical (multiple parallel circuits) • GPi/SNr are the major output nuclei • Output is inhibitory • Gpi/SNr neurons have high baseline firing rates (baseline = inhibition) • Gpi/SNr input from the striatum is focal and inhibitory, whereas input from the STN is diffuse and excitatory • Direct vs. indirect striatal pathways have opposing effects (inhib. vs. excit.) • Output of thalamus is primary to motor areas M1, PM SMA SNc Hyperdirect pathway
  • 28. Malfunctioning of basal ganglia induces dramatic abnormalities in voluntary movement. Basal ganglia coordinates movement indirectly, by receiving information from motor cortex and re-sending back to the motor cortex processed information through the thalamus.
  • 29. Basal Ganglia Circuit Cortex Striatum Thalamus GPe STN GPi/SNr excitatory inhibitory Direct pathway Indirect pathway M1, PM SMA SNc Hyperdirect pathway D2 D1 (+) Indirect Direct (-) (bias is to maintain thalamic channels opened and info flowing to cortex)
  • 30. Parkinson’s Disease •  Etiology –  Adult onset, thought to be genetic without 100% penetrance. –  One hypothesis is that it results from a genetic susceptibility to an environmental factor. •  Loss of DA input to striatum from SNpc •  Loss must involve over 90% of cells before symptoms appear.
  • 31. Parkinson’s Disease: Clinical Symptoms •  Motor –  Tremor –  Cogwheel rigidity –  Shuffling steps –  Akinesia –  Bradykinesia –  Dystonia •  Non-motor –  Cognitive slowing –  Difficulty with tasks requiring high level processing –  Depression Akinesia: Difficulty beginning or maintaining a body motion Bradykinesia: Slowness of movement; paucity or incompleteness of movement Dystonia: Sustained involuntary muscle contractions and spasms
  • 32. Parkinson’s Disease (Hypokinetic Movement) Cortex Striatum Thalamus GPe STN GPi/SNr excitatory inhibitory Direct pathway Indirect pathway • Decreased output of SNc dopaminergic projections • Decrease excitation in direct pathway • Increase inhibition in indirect pathway • Net effect: more inhibition of thalamus and therefore less excitatory input to motor cortex M1, PM SMA SNc D2 D1 (+) Indirect Direct (-)
  • 33. Parkinson’s Disease: Treatment •  L-DOPA (taken up by DA terminals in the striatum); converted to DA and then released. –  Not effective for long-term treatment –  Patients develop a tolerance to it –  Has many side effects (honeymoon period 3-5 years) •  Transplantation of fetal tissue •  Pallidotomy (cells in the posteroventral GPi are surgically ablated either unilaterally or bilaterally •  Deep Brain Stimulation (DBS): a surgical treatment involving the implantation of a brain pacemaker, which sends electrical impulses to brain.
  • 34. DBS DBS leads are placed in the brain according to the type of symptoms to be addressed. For essential tremor and Parkinsonian tremors, the lead is placed in the thalamus. For symptoms associated with Parkinson's disease (rigidity, bradykinesia/akinesia and tremor), the lead may be placed in either the globus pallidus or subthalamic nucleus.
  • 35. Huntington’s Disease (Hyperkinetic Movement) Cortex Striatum Thalamus GPe STN GPi/SNr excitatory inhibitory Direct pathway Indirect pathway • Cell loss in the striatum that seems to affect the indirect pathway disproportionately • Net effect: less inhibition of the thalamus and therefore excessive excitation of motor cortex M1, PM SMA SNc
  • 36. Subcortical Motor System: Basal Ganglia So what is the basal ganglia circuit doing? • The “Brake” hypothesis B.G. essentially acts like a brake to prevent unwanted movement. •  Excitation of STN via motor input leads to diffuse increase in inhibition. •  Excitation of the striatum in one motor circuit decreasing this inhibition focally thus “releasing the brake” for the selected movement. Cortex Striatum Thalamus GPe STN GPi/SNr excitatory inhibitory Direct pathway Indirect pathway M1, PM SMA SNc