A substituent effect is the change in a molecule’s reactivity when a substituent on the molecule is changed. In 1935, Louis Hammett designed a scale to measure influence of various substituents (X) at the meta- or para- positions on the acidity of benzoic acid.
Contributed by: Erika Aoyama and Megan Browning, University of Utah, 2016
A substituent effect is the change in a molecule’s reactivity when a substituent on the molecule is changed. In 1935, Louis Hammett designed a scale to measure influence of various substituents (X) at the meta- or para- positions on the acidity of benzoic acid.
Contributed by: Erika Aoyama and Megan Browning, University of Utah, 2016
The Hammett Plot is a type of Linear Free-Energy Relationship (LFER) analysis designed to model the electronic effect of substituents on aromatic systems (in the para and meta positions only). Information gathered can be used to probe the mechanism of the reaction and can be applied in the optimization of reaction conditions.
Contributed by: Eric Amerling & Christine Nervig (Undergraduates), University of Utah, 2013
RELATIVISTIC MEAN FIELD STUDY OF SM ISOTOPES WITH FTBCS APPROACHijrap
A theoretical study of the thermal pairing correlation as a function of temperature is performed for eveneven
148-154Sm isotopes using Finite Temperature Bardeen-Cooper-Schrieffer (FTBCS) approach within the
Relativistic Mean Field (RMF) model. Numerical results obtained at T=0 are found to be consistent with
the available experimental values. Further, results show the thermal dependency of various nuclear
parameters like gap parameter, pairing energy, binding energy, deformation and density. At T≠0.0 MeV,
the destruction of Cooper pairs and the pairing phase transition as well as shape transition is observed in
148-154Sm nuclei at critical temperature Tc≠0.
Study on rare-earth–doped type-I germanium clathratesYang Li
The synthesis of rare-earth clathrates RExBa8xGa16Ge30 is a challenging task. The Group IV clathrates with rare-earth doping are hardly to be experimentally prepared, except Eu clathrate. In the current study, the first-principle method based on the density functional theory was implemented. The effects of the various RE elements doping on the binding energy and chemical reaction drive energy were studied by optimizing the phase structure. The energy calculations suggest that it is difficult to synthesize RE clathrates without Ga doping. The function of Ga doping is to effectively increase the drive chemical reaction in order to synthesize the clathrates. The simulation shows that, besides Eu, other rare-earth elements, such as Sm, Nd, and Yb can also enter cage lattice in the considering of drive energy, thus making it possible to synthesize the (RE,Ba)8Ge30Ga16 clathrates.
An overview of the use of the Marcus Theory to calculate the energies of transition states.
Contributed by: Elizabeth Greenhalgh, Amanda Bischoff, and Matthew Sigman, University of Utah, 2015
Some reactions seem to obvious to fail, so what happens when they do? Quantum calculations yield invaluable insight to the nature of a reaction mechanism.
Presented at the Virtual Conference on Computational Chemistry VCCC 2014
Credit due to Guillermo Caballero on whose BSc thesis this presentation is based.
The branch of chemistry, which deals with the study of reaction rates and their mechanisms, called chemical kinetics.
Thermodynamics tells only about the feasibility of a reaction whereas chemical kinetics tells about the rate of a reaction.
For example, thermodynamic data indicate that diamond shall convert to graphite but in reality the conversion rate is so slow that the change is not perceptible at all.
Updating maxwell with electrons and charge version 6 aug 28 1Bob Eisenberg
Maxwell’s equations describe the relation of charge and electric force almost perfectly even though electrons and permanent charge were not in his equations, as he wrote them. For Maxwell, all charge depended on the electric field. Charge was induced and polarization was described by a single dielectric constant.
Electrons, permanent charge, and polarization are important when matter is involved. Polarization of matter cannot be described by a single dielectric constant ε_(r )with reasonable realism today when applications involve 10^(-10) sec. Only vacuum is well described by a single dielectric constant ε_(0 ).
Here, Maxwell's equations are rewritten to include permanent charge and any type of polarization. Rewriting is in one sense petty, and in another sense profound, in either case presumptuous. Either petty or profound, rewriting confirms the legitimacy of electrodynamics that includes permanent charge and realistic polarization. One cannot be sure that a theory of electrodynamics without electrons or (permanent, field independent) charge (like Maxwell’s equations as he wrote them) would be legitimate or not. After all a theory cannot calculate the fields produced by charges (for example electrons) that are not in the theory at all!
After updating,
1) Maxwell’s equations seem universal and exact.
2) Polarization must be described explicitly to use Maxwell’s equations in applications.
3) Conservation of total current (including ε_0 ∂E⁄∂t) becomes exact, independent of matter, allowing precise definition of electromotive force EMF in circuits.
4) Kirchhoff’s current law becomes as exact as Maxwell’s equations themselves.
5) Conservation of total current needs to be satisfied in a wide variety of systems where it has not traditionally received much attention.
6) Classical chemical kinetics is seen to need revision to conserve current.
The Hammett Plot is a type of Linear Free-Energy Relationship (LFER) analysis designed to model the electronic effect of substituents on aromatic systems (in the para and meta positions only). Information gathered can be used to probe the mechanism of the reaction and can be applied in the optimization of reaction conditions.
Contributed by: Eric Amerling & Christine Nervig (Undergraduates), University of Utah, 2013
RELATIVISTIC MEAN FIELD STUDY OF SM ISOTOPES WITH FTBCS APPROACHijrap
A theoretical study of the thermal pairing correlation as a function of temperature is performed for eveneven
148-154Sm isotopes using Finite Temperature Bardeen-Cooper-Schrieffer (FTBCS) approach within the
Relativistic Mean Field (RMF) model. Numerical results obtained at T=0 are found to be consistent with
the available experimental values. Further, results show the thermal dependency of various nuclear
parameters like gap parameter, pairing energy, binding energy, deformation and density. At T≠0.0 MeV,
the destruction of Cooper pairs and the pairing phase transition as well as shape transition is observed in
148-154Sm nuclei at critical temperature Tc≠0.
Study on rare-earth–doped type-I germanium clathratesYang Li
The synthesis of rare-earth clathrates RExBa8xGa16Ge30 is a challenging task. The Group IV clathrates with rare-earth doping are hardly to be experimentally prepared, except Eu clathrate. In the current study, the first-principle method based on the density functional theory was implemented. The effects of the various RE elements doping on the binding energy and chemical reaction drive energy were studied by optimizing the phase structure. The energy calculations suggest that it is difficult to synthesize RE clathrates without Ga doping. The function of Ga doping is to effectively increase the drive chemical reaction in order to synthesize the clathrates. The simulation shows that, besides Eu, other rare-earth elements, such as Sm, Nd, and Yb can also enter cage lattice in the considering of drive energy, thus making it possible to synthesize the (RE,Ba)8Ge30Ga16 clathrates.
An overview of the use of the Marcus Theory to calculate the energies of transition states.
Contributed by: Elizabeth Greenhalgh, Amanda Bischoff, and Matthew Sigman, University of Utah, 2015
Some reactions seem to obvious to fail, so what happens when they do? Quantum calculations yield invaluable insight to the nature of a reaction mechanism.
Presented at the Virtual Conference on Computational Chemistry VCCC 2014
Credit due to Guillermo Caballero on whose BSc thesis this presentation is based.
The branch of chemistry, which deals with the study of reaction rates and their mechanisms, called chemical kinetics.
Thermodynamics tells only about the feasibility of a reaction whereas chemical kinetics tells about the rate of a reaction.
For example, thermodynamic data indicate that diamond shall convert to graphite but in reality the conversion rate is so slow that the change is not perceptible at all.
Updating maxwell with electrons and charge version 6 aug 28 1Bob Eisenberg
Maxwell’s equations describe the relation of charge and electric force almost perfectly even though electrons and permanent charge were not in his equations, as he wrote them. For Maxwell, all charge depended on the electric field. Charge was induced and polarization was described by a single dielectric constant.
Electrons, permanent charge, and polarization are important when matter is involved. Polarization of matter cannot be described by a single dielectric constant ε_(r )with reasonable realism today when applications involve 10^(-10) sec. Only vacuum is well described by a single dielectric constant ε_(0 ).
Here, Maxwell's equations are rewritten to include permanent charge and any type of polarization. Rewriting is in one sense petty, and in another sense profound, in either case presumptuous. Either petty or profound, rewriting confirms the legitimacy of electrodynamics that includes permanent charge and realistic polarization. One cannot be sure that a theory of electrodynamics without electrons or (permanent, field independent) charge (like Maxwell’s equations as he wrote them) would be legitimate or not. After all a theory cannot calculate the fields produced by charges (for example electrons) that are not in the theory at all!
After updating,
1) Maxwell’s equations seem universal and exact.
2) Polarization must be described explicitly to use Maxwell’s equations in applications.
3) Conservation of total current (including ε_0 ∂E⁄∂t) becomes exact, independent of matter, allowing precise definition of electromotive force EMF in circuits.
4) Kirchhoff’s current law becomes as exact as Maxwell’s equations themselves.
5) Conservation of total current needs to be satisfied in a wide variety of systems where it has not traditionally received much attention.
6) Classical chemical kinetics is seen to need revision to conserve current.
Conheça melhor as ideias e como trabalha a 11:21, agência de propaganda criadora da Simplicidade Criativa, que traz mais resultados com menos investimento para as marcas, produtos e serviços.
7) Escatologia princípio do fim - A grande tribulaçãoJean Jorge Silva
Este tema trata do pior tempo na história da humanidade, a grande tribulação, também sobre como entender a simbologia do livro de apocalipse e muito mais
9) Escatologia Princípio do Fim - 666, a marca da bestaJean Jorge Silva
Este estudo vai mostrar que a marca da besta está e sempre esteve ligada à adoração, ou seja, a quem o homem vai adorar, porque essa foi sempre foi a questão entre Deus e o diabo.
Este estudo trata da visão das 70 semanas que o profeta Daniel teve quando estava no cativeiro judeu na babilonia, passa também pela reconstrução de jerusalem, a crucificação de Jesus e outros fatos historicos que a Biblia e o historiador judeu Flavio Josefo registraram.
Relativistic Mean Field Study of SM Isotopes with FTBCS Approach ijrap
A theoretical study of the thermal pairing correlation as a function of temperature is performed for eveneven
148-154Sm isotopes using Finite Temperature Bardeen-Cooper-Schrieffer (FTBCS) approach within the
Relativistic Mean Field (RMF) model. Numerical results obtained at T=0 are found to be consistent with
the available experimental values. Further, results show the thermal dependency of various nuclear
parameters like gap parameter, pairing energy, binding energy, deformation and density. At T≠0.0 MeV,
the destruction of Cooper pairs and the pairing phase transition as well as shape transition is observed in
148-154Sm nuclei at critical temperature Tc≠0.
• Background and motivation – the success of pheophytin (pheo, 脫鎂葉綠素) catalyst
• Porphyrin-ring family and roles of their derivative morphologies
• Similar derivatives within DNA base pairs
• 1st-principle simulation of simplified H2 decomposition steps involving derivative DNA base pairs à energetically favorable?
• Wet DNA-catalyzed chemical battery experiment and result
• Dry DNA-catalyzed hydrogen fuel cell under room temperature
• Summary and conclusions
Current applications of isothermal titration calorimetry to the study of prot...PaReJaiiZz
The absorption or liberation of heat has proven a widely spread property in biomolecular processes. Isothermal titration calorimetry (ITC) measures this property directly. This feature not only implies high precision in determining the binding enthalpy, but also allows us to infer the reaction mechanism in a more objective way than many non-calorimetric techniques. In this chapter, the principles of ITC are reviewed together with the basic thermodynamic formalism on which the technique is based. In addition, the current state of the art in calorimetry in protein recognition is described, with particular emphasis on advances in the last few years.
This is the plenary talk given by Prof Shyue Ping Ong at the 57th Sanibel Symposium held on St Simon's Island in Georgia, USA.
Abstract: Powered by methodological breakthroughs and computing advances, electronic structure methods have today become an indispensable toolkit in the materials designer’s arsenal. In this talk, I will discuss two emerging trends that holds the promise to continue to push the envelope in computational design of materials. The first trend is the development of robust software and data frameworks for the automatic generation, storage and analysis of materials data sets. The second is the advent of reliable central materials data repositories, such as the Materials Project, which provides the research community with efficient access to large quantities of property information that can be mined for trends or new materials. I will show how we have leveraged on these new tools to accelerate discovery and design in energy and structural materials as well as our efforts in contributing back to the community through further tool or data development. I will also provide my perspective on future challenges in high-throughput computational materials design.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
DERIVATION OF MODIFIED BERNOULLI EQUATION WITH VISCOUS EFFECTS AND TERMINAL V...Wasswaderrick3
In this book, we use conservation of energy techniques on a fluid element to derive the Modified Bernoulli equation of flow with viscous or friction effects. We derive the general equation of flow/ velocity and then from this we derive the Pouiselle flow equation, the transition flow equation and the turbulent flow equation. In the situations where there are no viscous effects , the equation reduces to the Bernoulli equation. From experimental results, we are able to include other terms in the Bernoulli equation. We also look at cases where pressure gradients exist. We use the Modified Bernoulli equation to derive equations of flow rate for pipes of different cross sectional areas connected together. We also extend our techniques of energy conservation to a sphere falling in a viscous medium under the effect of gravity. We demonstrate Stokes equation of terminal velocity and turbulent flow equation. We look at a way of calculating the time taken for a body to fall in a viscous medium. We also look at the general equation of terminal velocity.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
1. 4796
Molecular Orbital Theory of the Electronic Structure of
Organic Compounds. V. Molecular Theory
of Bond Separation
W. J. Hehre, R. Ditchfield, L. Radom, and J. A. Pople
Contributionfrom the Department of Chemistry, Carnegie-Mellon University,
Pittsburgh, Pennsylvania 15213. Received March 5, 1970
Abstract: The complete hydrogenation of an organic molecule is separated into two processes. In the first,
termed bond separation, the molecule is separated into its simplest parents containing the same component bonds.
The energy associated with such a reaction is then the heat of bond separation. The second step consists of full
hydrogenation of the products of bond separation. To study these two processes, we have performed ab initio
molecular orbital calculations on a variety of polyatomic molecules. Both minimal and extended basis sets,
taken as linear combinations of Gaussian-type functions, are shown to give heats of bond separation in good
agreement with experiment. In contrast, only the extended basis is successful in reproducing the heats of hydro-
genation of the parents.
n important objective of quantum chemistry is
A the quantitative estimation of relative stabilities
of organic molecules. This goal has often seemed
remote because simple treatments, such as single-de-
terminant molecular orbital theory, neglect large effects
due to electron correlation and it is therefore extremely
difficult to estimate total energies to high accuracy. It
has long been recognized that single-determinant mo-
lecular orbital theory underestimates the dissociation
energies of diatomic molecules for this reason. Rec-
ognizing the difficulty of making absolute calculations
of total molecular energies, some authors have more
modestly attempted a direct calculation of heats of
reaction involving closed shell species, where there
is some prospect of cancellation of correlation cor-
rections. Recent work by Snyder and Basch1t2 has
shown that heats of complete hydrogenation for a
set of molecules containing two or three heavy atoms
(C, N, 0, or F) are given correctly to within about
30 kcal/mol by single-determinant molecular orbital
theory using a Gaussian-type basis set of modest size.
This development is encouraging, since the energies
of the products of such hydrogenation (methane, am-
monia, water, and hydrogen fluoride) are well known
experimentally, so that a reliable prediction of the
heat of hydrogenation is sufficient to estimate the
total energy of the original compound.
For a wide range of organic molecules, it is useful
to separate the process of complete hydrogenation
into two steps. If we are dealing with a molecule
which can be represented by a classical valence struc-
ture (without formal charges or unpaired electrons),
we may consider, as a first step, the reaction in which
all formal bonds between heavy (nonhydrogen) atoms
are separated into the simplest (or parent) molecules
with this same type of bond. If we restrict ourselves
to molecules containing only H, C, N, 0, and F,
this set of parent molecules consists of ethane, ethylene,
acetylene, methylamine, formaldiniine, hydrogen cya-
nide, methanol, formaldehyde, fluoromethane, hy-
drazine, diimide, hydroxylamine, nitroxyl, fluoramine,
hydrogen peroxide, and hypofluorous acid. For stoi-
(1) L.C.Snyder and H.Basch, J. Amer. Chem. SOC.,91, 2189 (1969).
(2) L. '2. Snyder, J. Chem. Phj's.,46, 3602 (1967).
chiometric balance, an appropriate number of the
simple hydrides methane, ammonia, and water must
be added to the left-hand side (reactants), Taking
methylketene as an example, this reaction would be
CH3-CH=C=O +2CH4 +CiH, +CtHa +HSCO (1)
Since all bonds between heavy atoms are separated
from one another, this reaction will be termed the
bond separation reaction and the corresponding heat
will be the heat of bond separation.
The second step can be formulated as the full hy-
drogenation of the products of the bond separation
reaction. For the example quoted above, the three
additional reactions
CPH,+ HP+2CH4
CPH,+ 2H2 +2CH4
HzCO + 2H2 +CH4 + H,O
(2)
are required.
gives the complete hydrogenation reaction
Addition of the reactions 1 and 2 then
CH,-CH=C=O + 5Hn 3CH4 +Hz0 (3)
Bond separation reactions such as (1) are examples
of chemical changes in which there is retention of the
number of bonds of a given formal type, but with a
change in their relation to one another. Such pro-
cesses in general may be termed isodesmic. The hy-
drogenation reactions (eq 2 and 3) are not isodesmic.
Many qualitative and empirical approaches to sta-
bility attempt to separate energy contributions which
are associated with isodesmic processes. For example,
conjugation and resonance in molecules such as 1,3-
butadiene and benzene refer to stabilization of ex-
tended systems of formal single and multiple bonds
when compared with corresponding isolated bonds.
Another example is the strain energy of cycloalkanes,
which compares single bonds in ring systems with
those in open chains, In general, the energies of iso-
desmic reactions measure deviations from the additivity
of bond energies.
It is important to note that a satisfactory method
of predicting heats of bond separation would be suffi-
cient to predict the total energy of the molecule, pro-
vided that the energies of the bond separation prod-
Journal of the American Chemical Society ] 92:16 / August 12, 1970
2. 4797
The second set +p is
one which is designed to give total energies which ap-
proach the limit of that which is possible with an iso-
tropic minimal basis. The atomic orbitals 4,’ are
again given by sums of the type (6) (with N = 6),
but the d and a values are now chosen to minimize
the calculated energy of the isolated atom. These
orbitals are referred to as least energy minimal atomic
orbitals (LEMAO) and are specified in full elsewhere,’
and the { scaling parameters for the valence shells
are treated as additional variational parameters in the
molecular calculations to allow for changes in atomic
size depending on the molecular environment. Further
details of the minimization procedure and detailed {
values are given in the Appendix.
We have tested the LEMAO-6G set to find whether
heats of bond separation or heats of hydrogenation
can be calculated using an isotropic minimal basis
or whether an extended basis is essential. The
LEMAO-6G calculations are, of course, substantially
more time consuming than the STO-3G ones, parti-
cularly if scale factor optimization is involved.
Basis Set 3 (4-31G). The third basis is an extended
set, containing more than the minimal number of 4
functions. The inner shell of a heavy atom is still
represented by a single function which is a sum of
four Gaussians. However, the valence shells (hy-
drogen 1s and heavy atom 2s and 2p) are described by
inner and outer parts which are, respectively, sums
of three and one Gaussian functions. As with the
minimal sets, Gaussian exponents are shared between
2s and 2p.
The parameters for this basis are determined in a
manner similar to the LEMAO set. The coefficients
and exponents in expansions such as (6) are first chosen
to minimize the energy of the atomic ground states.
Scaling factors are then introduced for both parts
of the valence functions and varied independently to
minimize the energy of a small number of simple
molecules. Finally, on the basis of this experience, a
set of standard scaling factors is selected and this
is used for all calculations reported in this paper. De-
tailed numerical values are given elsewhere.8
Extended bases have been widely used in molecular
orbital calculations on small molecules. The reaction
heat studies of Snyder and Baschl92 are based on a
rather larger extended set containing more Gaussian
functions. It is to be expected that these extended
sets will have certain advantages over minimal sets. In
particular, since each valence atomic orbital is split
into inner and outer parts, some flexibility of effective
atomic size is permitted by variation of the weighting
coefficients. Further, this relative inner-outer weight-
ing may be different for different directions, so that
anisotropic effects can be taken into account in a
way which is not possible with a rescaled isotropic
minimal basis. The 4-31G set is designed to take
advantage of these flexible features while remaining
simple enough to be applied to moderately large mole-
cules.
Basis Set 2 (LEMAO-6G).ucts are known, either experimentally or by fuller
theoretical studies.
The main aim of this paper is to test how well heats
of bond separation can be calculated using simple
molecular orbital methods. This is a reasonable ob-
jective since it may be hoped that errors in the de-
scription of individual bonds will largely cancel and
that smaller interactions between bonds may be handled
satisfactorily by relatively simple methods. It will
be shown that all methods considered predict heats
of bond separation more effectively than heats of hy-
drogenation of the products of bond separation.
Quantum Mechanical Methods
We shall study a series of closed shell molecules
using a single-determinant wave function built from
doubly occupied molecular orbitals $I which are con-
structed in the linear combination of atomic orbital
(LCAO) approximation
(4)
The LCAO coefficients cPf are found by solution of
the Roothaan equations3 which then lead to a cal-
culated total energy, given the coordinates and charges
of the nuclei.
The first
two are minimal sets, consisting of a single function
for hydrogen (1s) and five functions for each heavy
atom (Is, 2s, 2p). The third is a more flexible extended
set in which each valence atomic orbital (1s for H
and 2s and 2p for heavy atoms) is replaced by two
parts, so that there are two + functions per hydrogen
and nine per heavy atom. All +,, are themselves sums
of Gaussian functions chosen as follows.
Basis Set 1(STO-3G). The first basis set is one which
closely simulates a minimal basis of Slater-type (expo-
nential) orbitals. Each +,, is obtained by rescaling a
three-Gaussian least-squares representation of the stan-
dard type Slater-type orbital with { = 1.
Three basis sets +p will be considered.
Thus
+p(i-,r) = {a’*+,,’m ( 5 )
where the +,,’ are ( N = 3)
N
k = 1
N
k = l
+?s’(r) = Zdzs,k&?ls(a?k,r) (6)
&p’(r) = xdZp,kg?p(azk,r)
gl, and g2, being normalized Gaussian orbitals. The d
coefficients and a exponents in (6) are specified else-
where,4 together with a standard set of molecular {
values which are used in this paper.
The STO-3G basis has the merit of great simplicity
so that it can be readily applied to quite large molecules
without excessive computation. It has already been
used to make extensive studies of charge distribution5
and molecular geometry.6
(3) C. C. J. Roothaan, Reu. Mod. Phys., 23, 69 (1951).
(4) W. J. Hehre, R. F. Stewart, and J. A. Pople, J. Chem. Phys., 51,
(5) W. J. Hehre and J. A. Pople, J. Amer. Chem. Soc., 92,2191 (1970).
2657 (1969).
(6) M. D. Newton, W. A. Lathan, W. J. Hehre, and J. A. Pople,
(7) R. Ditchfield, W. J. Hehre, and J. A. Pople, J. Chem. Phys., 52,
(8) R. Ditchfield, W. J. Hehre, and J. A. Pople, ibid., in press.
J. Chem. Phys., 52, 4064 (1970).
5001 (1970).
Hehre, Ditchfield, Radom, PopIe / Electronic Structure of Organic Compounds
3. 4798
Table I. Calculated and Experimental Energy Data
Zero-point
vibrational
r- Total energy, hartrees ----- energy,bb AHr’o,’’
Molecule STO-3G LEMAO-6G 4-31G hartrees kcal mol-‘
Hydrogena
Hydrogen fluorideb
Water”
Ammoniad
Methanee
Ethanef
Methylaminen
Methanolh
Fluorornethanet
Ethylene?
Formaldehydeh
Acetylene‘
Hydrogen cyanide”
Propane”
Propene0
Propynem
Allenep
Cyclopropaneq
Cyclopropener
Benzenes
Difluoromethanel
Tetrafluoromethane18
Dimethyl etheru
Acetaldehydew
Ketene=
Carbon dioxidey
Dimethylaminez
Acetonitrilem
Formamideau
-1.11669
-98.57078
-74.96293
-55.45400
-39.72653
-78.30603
-94.03043
-113.54502
-137.16836
-77.07232
-112.35375
-75.85208
-91,67515
-116,88580
-115.65828
-114.44397
-114.41715
-115.66147
-114.39944
-227.89059
-234.62559
-429.56857
-152.13072
-150.94456
-149.72440
-185.06465
-132.61078
-130.27031
-166.67760
-1.12807
-100.01668
-75.99017
-56.14950
-40.17468
-79.17104
-95.13420
-114.96508
-138.99086
-77,96240
-113.74949
-76.76284
-92.76814
-118.17025
-116.96683
-115.77078
-115.74607
-116.94739
-115.69476
-230.47734
-237.81761
-435.47116
-153.94333
-152.77044
-151,56247
-187.42218
-134.12003
-131.78515
-168.76699
-1.12673
-99.88726
-75,90739
-56.10247
-40.13938
-79.11562
-95.06888
-114.86925
-138.85662
-77,92103
-113.69209
-76.71059
-92.73118
-118,09345
-116,90381
-. 115.69964
-115.69540
-116.88029
-115.64172
-237.59189
-435.07291
-153.83633
-152.68631
-151.49411
-187.32796
-134.03708
-131.72660
-168.67320
0.01004~
0.00943cc
0.02052
0.03287
0.04320
0.07214
0.06243
0.04961
0.03817
0 04923
0.02567
0.02579
0.01557
0.09963
0.0773gdd
0.05389
0.05320dd
0.07879
0.05449ee
0.09748
0.03207‘f
0.01714
0.07736
0,0529800
0.03057dd
0.01155dd
0.08941hh
0.04393
0.04665z1
0.0
-64.789
-57.102
-9.34
-15.970kk
-16.523kh
-1.91“
-45.355
-54,079“
14,515kk
54.324kk
32.39
-27.1
-19.482kk
8.468kk
46.017kk
47.70hk
16 79‘’’mm
68.681’.mm
2 W
-104.97
-219.6
-39.745
-37.14
-13.86
-93.963
0.83‘1
22.58
-41.72“ rn’n
References a-aa pertain to choice of molecular geometry. B. P. Stoicheff, Can. J. Phys., 35,730 (1957). G. A. Kuipers, D. F. Smith,
and A. H. Nielsen, J. Chem. Phys., 25, 275 (1956). W. S. Benedict,
and E. K. Plyler, Can.J. Phys., 35, 1235(1957). f D. W. Lepard, D. M.
C. Sweeney, and H. L. Welsh, Can. J. Phys., 40, 1567 (1962). E. V. Ivash and D. M.
Dennison, ibid., 21, 1804 (1953). 1 H. C. Allen, Jr., and E. K. Plyler,
ibid., 80, 2673 (1958). J. Callomon and B. P. Stoicheff, Cm7.J. Pliys., 35,
373 (1957). D. R. Lide, Jr., and D. Christensen,
ibid., 35, 1374 (1961). *O. Bastiansen, F. N. Fritsch, and K. Hedberg,
Acta Crystallogr., 17, 538 (1964). ‘A.
Langseth and B. P. Stoicheff, Can.J. Phys., 34, 350 (1956). u. C. W. W. Hoffmann
and R. C. Lidingstone, J. Clzem.Phys., 21, 565 (1953). Lb R. W. Kilb,
C. C. Lin, and E. B. Wilson, Jr., ibid., 26, 1695 (1957). A. P. Cox, L. F. Thomas, and J. Sheridan, Spectrochim. Acta, 15, 542 (1959).
y C. P. Courtoy, Ann. SOC.Sci. Bruxelles, 73, 5 (1959). aa R. J. Kurland
and E. B. Wilson, Jr., ibid.,27,585 (1957). bb Unless otherwise noted, from T. Shimanouchi, “Tables of Molecular Vibrational Frequencies,”
NSRDS-NBS 6, 11, 17, U. S. Government Printing Office, Washington, D. C. cc “JANAF Thermochemical Tables,” D. R. Stull, Ed., The
Dow Chemical Company, Midland, Mich., 1965. dd G. Herzberg, “Electronic Spectra of Polyatomic Molecules,” Van Nostrand, Princeton.
N. J., 1966. ec D. F. Eggers, J. W. Schultz, K. B. Wiberg, E. L. Wagner, L. M. Jackman, and R. L. Erskine, J. C/iem.Pliys., 47, 946 (1967).
f f E. K. Plyler and W. S. Benedict, J. Res. Nut. Bur. Stand., 47, 202 (1951). gg J. C. Evans and H. J. Beriistein, Can. J. Clwm., 34, 1083
(1956). fi Unless otherwise noted,
from D. D. Wagman, W. H. Evans, V. B. Parker, I. Halow, W. M. Bailey, and R. H. Schumm, “Selected Values of Chemical Thermodynamic
Properties,” National Bureau of Standards, Technical Note No. 270-3, U. S. Government Printing Office, Washington, D. C. kk F. D.
Rossini, K. S. Pitzer, R. L. Arnett, R. M. Braun, and G. C. Pimentel, “Selected Values of Physical and Thermodynamic Properties of Hydro-
carbons and Related Compounds,” Carnegie Press, Pittsburgh, Pa., 1953. 11 Calculated from AHfo2ysand fundamental vibrational fre-
quencies as described in text. mm S. W. Benson, F. R. Cruickshank, D. M.
Golden, G. R. Haugen, H. E. O’Neal, A. S. Rodgers, R. Shaw, and R. Walsh, Chem. Rev., 69,279(1969).
W. S. Benedict, N. Gailar, and E. K. Plyler, ibid., 24, 1139(1956).
e H. C. Allen, Jr. and E. K. Plyler, J. Clzem.Phys., 26, 972 (1957).
n D. R. Lide, Jr., J. Chem. Phys., 27, 343 (1957).
W. F. Edge11and L. Parts, J. Amrr. Chem. SOC.,78, 2358 (1956).
K. Takagi and T. Oka, J. Phys. SOC.Jap., 18, 1174 (1963).
C. C. Costain, J. Chem.Phys., 29,864 (1958). 1L D. R. Lide, Jr., ibid., 33,1514 (1960).
PA. G. Maki and R. A. Toth, J. Mol. Spectrosc., 17, 136 (1965).
P. H. Kasai, R. J. Myers, D. F. Eggers, Jr., and K. B. Wiberg, J. C/iem. Pliys., 30, 512 (1959).
D. R. Lide, Jr., J. Amer. Chem. SOC.,74, 3548 (1952).
U. Blukis, P. H. Kasai, and R. J. Myers, ibid., 38, 2753 (1963).
J. E. Wollrab and V. W. Laurie, J. Cliem.Phys., 48, 5058 (1968).
hh G. Dellepiane and G. Zerbi, J. Chem. Phys., 48, 3573 (1968). J. C. Evans, ibid., 22, 1228 (1954).
Additional references refer to experimental values of AH~”nsa.
Results and Discussion
The three theoretical methods described in the pre-
vious section have been applied to the set of molecules
listed in Table I. This table lists the total energies
calculated for configurations in which the nuclei are
fixed in the experimentally determined equilibrium con-
figurations. Also given are energies of zero-point vi-
bration (calculated as i/2hZ;z~i,where vi are experi-
mental vibration frequencies) and observed heats of
formation at 0°K. In some cases, it was necessary
to estimate heats at 0°K from observed values at
T 298 OK using the formulas
In their earlier study, Snyder and Baschij2 applied
corrections to theoretical energies in order to compare
heats of reaction at 298°K with experimental values.
We, on the other hand, have applied the vibrational
correction to the heat of reaction in order to obtain a
reaction energy (at 0°K) for fixed nuclei. This experi-
Journal of the American Chemical Society 1 92:16 1 August 12, 1970
4. 4799
Table II. Bond Separation Energies
Molecule
p-Bond separation energy, kcal mol-'
Bond separation reaction STO-3G LEMAO-6G 4-31G Exptl"
Propane
Propene
Propyne
Allene
~~
CHaCHzCHs +CH4 -C 2CHaCHa 0.2 1.8 1.o 1.5 (2.4)
CHaCHCHz +CH4 + CHsCHs +CHaCHr 4.1 5.1 4.0 5.0(5.5)
CHaCCH +CHI + CHaCHa +CHCH 7.8 7.3 8.0 7.2 (7.8)
CHzCCHz +CH4 -* 2CHzCHz -0.6 -2.5 -4.6 -4.1 (-2.7)
Cyclopropane
Cyclopropene
Benzene
Difluoromethane
Tetrafluoromethane
Dimethyl ether
Acetaldehyde
Ketene
Carbon dioxide
Dimethylamine
Acetonitrile
Formamide
CHZCHZCHZ+ 3CH4 -C 3CHaCHs
r-
C H Z C H ~ H+ 3CH4 + 2CHaCH~+CHZCH~
CsHs + 6CH4 + 3CHaCHa + 3CHzCHt
CHzFz +CH4 + 2CHaF
CF4 +3CH4 + 4CHaF
CHaOCHs +HzO + 2CHaOH
CHaCHO +CH4 + CHaCHa +HzCO
HzCCO +CH4 + CHzCHz +HiCO
OCO +CH4 -* 2HaCO
CHaNHCHa +NH3 + 2CHsNHz
CHaCN +CH4 -* CHaCHa +HCN
NHzCHO +CH4 + CHaNHz +HzCO
-48.3
-66.1
72.0
9.7
45.2
2.3
7.1
15.6
52.5
2.5
9.8
12.5
-26.2
-53.8
78.5
6.6
19.9
2.1
15.4
15.9
61.4
0.7
13.0
36.4
-30.4
-58.0
11.3
40.5
3.3
11.3
12.8
52.2
1.1
12.0
32.4
-23.5 (-18.5)
-45.2 (-39.3)
61.1 (65.8)
12.1 (12.8)
47.5 (51.2)
5.3 (6.1)
8.5 (9.5)
16.5 (17.3)
57.9 (55.7)
3.1 (4.7)
8.9 (9.3)
29.8 (28.7)
5 Heats of reaction at 0°K corrected for zero-point vibration. Uncorrected heats are given in parentheses.
Table III. Hydrogenation Energies of Products of Bond Separation Reactions
Calculated
Hydrogenation reaction STO-3G LEMAO-6G 4-31G Experimental5
CHsCH3 +Hz -C 2CH4
CHaNHz +Hz -C CH4 +NHa
CHaOH +HI + CHI +HzO
CHaF +Hz -C CH4 +H F
CHzCHz +2H2 + 2CH4
HaCO +2H2 + CHa +Hz0
CHCH + 3Hz + 2CH4
HCN + 3Hz -C CH4 +NHs
-19.0
-21.0
-17.4
-7.7
-92.5
-64.2
-157.5
-97.5
-31.5
-38.8
-45.0
-45.5
-82.1
-99.9
-127.0
-107.8
-22.9
-29.0
-31.9
-27.2
-65.4
-63.5
-118.0
-81.9
-18.1 (-15.4)
-25.7 (-23.4)
-30.3 (-27.7)
-29.5 (-26.7)
-57.2 (-46.5)
-57.3 (-46.0)
-105.4 (-86.3)
-76.8 (-57.7)
Heats of reaction at 0°K corrected for zero-point vibration. Uncorrected heats are given in parentheses.
mentally derived quantity may then be compared
directly with the three purely theoretical ab initio en-
ergies. Table I1 gives the bond separations for the
molecules containing three or more heavy atoms. Since
the corrections for zero-point vibration are probably
less accurately known than the heats of formation,
the uncorrected heats of bond separation (at 0°K)
are also given in parentheses. Table I11 gives a cor-
responding set of values for the energies of hydro-
genation. As pointed out in the introduction, energies
of complete hydrogenation for the larger molecules
can be obtained by summing appropriate reaction en-
ergies in these two tables.
The results clearly indicate that all three methods
calculate bond separation energies more accurately than
hydrogenation energies. This is reflected in the mean
absolute differences between theory and experiment
shown in Table IV. It is also apparent that the ex-
Table IV. Mean Absolute Deviations between Theory and
Experiment (kcal mol-')
LEMAO-
STO-3G 6G 4-31G
Bond separation energies5 5.8 4.9 3.5
Hydrogenation energies 19.4 22.2 5 . 5
0 Benzene excluded.
tended 4-31G basis generally gives more accurate re-
sults. The minimal basis sets are unsatisfactory for
the calculation of hydrogenation energies, but the re-
sults for the bond separation energies are only slightly
inferior to those for the extended basis.
A number of comments can be made about individual
bond separation energies. The positive value for pro-
pane indicates that two adjoining C-C bonds have
increased stability compared with separate bonds. This
is consistent with the fact that branching increases
the stability of paraffins. The (uncorrected) experi-
mental heat of bond separation is 2.4 kcal/mol, of
which 0.9 kcal/mol is attributed to differences in zero-
point vibrations. However, it should be noted that
the uncertainty in the vibrational frequencies of a
molecule such as propane may lead to an error
approaching 1kcal/mol in the correction.
Positive bond separation energies are also found
for other saturated molecules in reasonable agreement
with experimental results. The values for dimethyl-
amine and dimethyl ether are larger than for propane, a
trend which is reproduced by the 4-31Gcalculations. A
large positive bond separation is found for difluoro-
methane, in agreement with the well-known strength-
ening of C-F bonds on polyfluorinated saturated car-
bon atoms. The effect is largest in tetrafluoromethane.
The minimal LEMAO set is apparently unsatisfactory
in describing C-F interactions.
The molecules propene, propyne, acetaldehyde, and
acetonitrile have methyl groups attached to unsaturated
bonds. Under these circumstances, the bond separa-
tion energy is a good measure of the energy stabiliza-
tion to be attributed to hyperconjugation. The cal-
culated values are in moderate agreement with experi-
Hehre, Ditchfield, Radom, Pople / Electronic Structure of Organic Compounds
5. 4800
Table V. Optimum Scaling Factors for Molecules (LEMAO-4G)
Molecule Atom Scaling factor Molecule Atom Scaling factor
Water
Ammonia
Methane
Ethane
Methylamine
Methanol
Fluoromethane
Ethylene
Formaldehyde
Acetylene
Hydrogen cyanide
Propane
Propene
Propyne
0.978
1.487
0.985
1.410
1.040
1.317
1.059
1.289
1.078
0.991
1.283
1.389
1.087
0.982
1.290
1.486
1.096
0.985
1.292
1.056
1.320
1.122
0,993
1.263
1.062
1.400
1.093
1.017
1.378
1.056
1.076
1.290
1.262
1.048
1.077
1.059
1.320
1.282
1.293
1.050
1.088
1.064
1.410
1.301
Allene
Cyclopropane
Cyclopropene
Benzene
Difluoromethane
Tetrafluoromethane
Dimethyl ether
Acetaldehyde
Ketene
Carbon dioxide
Dimethylamine
Acetonitrile
Formamide
1.051
1.090
1.335
1.056
1.329
1.063
1.058
1.362
1.300
1.069
1.069
1.309
1.151
0.987
1.291
1.257
0.992
1.085
0.984
1.284
1.134
1.053
0.988
1.229
1.325
1.025
1.164
1.ooo
1.383
1,222
0,996
1.074
0.999
1.280
1.356
1.115
1.058
1.010
1.324
1.160
0.998
0,980
1.213
1.470
ment in all cases. Stronger conjugative interaction
is found for formamide as observed, although this
effect is underestimated by the STO-3G basis.
For benzene, the bond separation reaction refers
the energy of the molecule to that of separate double
and single bonds and is therefore a good measure
of the resonance energy. It is somewhat overestimated
by the minimal basis sets.
Effects of cumulated double bonds are well repre-
sented by the results on allene, ketene, and carbon
dioxide. The theory (particularly with the extended
4-31G basis) clearly reproduces the trend from a small
negative destabilizing effect in allene to a large positive
effect for carbon dioxide.
The bond separation energies of cyclopropane and
cyclopropene give some indication of the strain involved
in the formation of three-membered rings. All three
methods give values which are rather more negative
than the experimental numbers, indicating an overes-
timation of strain energy.
The hydrogenation energies shown in Table I11 are
in satisfactory agreement with experimental results only
for the extended 4-31G basis set. The theoretical
numbers using the minimal LEMAO-6G set are all
more negative than the 4-31G results. Since use of
an extended basis has little effect on the energy of HS,
this indicates that the improvement between LEMAO-
6G and 4-31G is primarily due to a better description
of the bonds between heavy atoms.
We may also note that the 4-31G results are also
more negative than experimental values (except for
CH3F). This again indicates that the theoretical energy
is least satisfactory for the largest molecule. Snyder
and Basch also obtained hydrogenation energies which
were mostly too negative using their basis set, which
is rather more extended than ours. We should em-
phasize, as they did, that the calculated reaction energies
do not necessarily show improved agreement with ex-
periment as the basis set is expanded, since there may
be a residual difference of correlation energy between
reactants and products. The single-determinant (Har-
tree-Fock) limits for the energies of these reactions
are not yet known with sufficient accuracy to assess
this matter fully.
Conclusion
The main conclusion of this work is that it is useful
to divide the energy of complete hydrogenation into a
bond separation energy followed by a hydrogenation
energy for the products, The results show that the
Journal of’the American Chemical Society 1 92:16 / August 12, 1970
6. 4801
Appendix
values
used in this study. For computational efficiency, these
were calculated using the LEMAO-4G representation.
Previous work has shown such r's to be systematically
close to the 6-Gaussian valuesg The r's for all
nonequivalent atoms (with the exception that hydrogen
atoms attached to the same heavy atom are given
the same r)were varied in steps of 0.01 until the total
energy was minimized. Two to three optimization
cycles on the complete set result in {'s accurate to
0.003 or better. Final runs were then made with
the LEMAO-6G basis using these rvalues.
press.
Table V reports the optimum valence shell
(9) W. J. Hehre, R. Ditchfield, and J. A. Pople, J. Chem. Phys., in
first part can be reasonably estimated by a minimal
basis set, even though the full process is not described
satisfactorily, The extended 4-31G basis, on the other
hand, handles both parts well.
Since use of the extended basis involves considerable
computation, it cannot easily be applied to larger
organic molecules. Under these circumstances the
STO-3G basis, the simpler of the two minimal basis
sets, should be valuable in estimating bond separation
energies. These may then be used in conjunction with
more accurately known energies for the parents to pre-
dict stabilities of large organic molecules.
This research was supported in
part by National Science Foundation Grant No. GP-
9338.
Acknowledgment.
On Fluorine-19Hyperfine Splittings in the Electron Spin
Resonance Spectra of Fluorinated Aromatic Free Radicals.
11. Triphenylmethyl Radicals1
Shrikant V. Kulkarni and Charles Trapp2
Contributionfrom the Department of Chemistry, Illinois Institute of Technology,
Chicago, Illinois
University of Louisville, Louisville, Kentucky 40208.
60616, and the Department of Chemistry,
Received October 20, 1969
Abstract: The electron spin resonance spectra of symmetrically fluorinated triphenylmethyl radicals have been
obtained. The fluorine-19hyperfine interactionshave been correlatedwith the spin densities on the fluorine atoms
calculated by an approximate MO method with the use of the two-parameterequation, aF = QcFF~c"+ QFC~PF".
The estimated values of the parameters are QcFF = -85 and QFCF= 1043G. Thesevalues of the parameters are
consistent to within 8z in correlating all the experimental data not only on the series of fluorinated triphenyl-
methyl radicals but also on another series of fluorinatedaromatic radicals (see following article, part IIIlb). The
estimated maximum uncertainty in the parameters is about 20%. Contrary to what has been generally assumed,
the results of this investigation suggestthat in aromatic radicalsaFand pc" can have opposite signs. Evidence for a
direct interaction between o-fluorine atoms and spin density on the methyl carbon atom is presented.
cConnell's relati~nship,~aH = QCHHpC", has
M successfully related the observed proton hyper-
fine splittings, aH, in the electran spin resonance (esr)
spectra of aromatic hydrocarbon radicals, to the spin
densities, pcT, in the n-electron system on the contiguous
carbon atoms. Qc" is a proportionality constant
generally determined from experiment, but which can
also be calculated approximately from theory. Flu-
orine-19, which occurs in 100% natural abundance, is
a nucleus similar to the proton in magnetic moment
and spin. Until recently there have been only a few
esr studies on fluorinated aromatic free radicals. The
(1). (a) Part I has been published as a communication: S. V. Kul-
karni and C. Trapp, J . Amer. Chem. Soc., 91, 191 (1969). (b) Part 111:
S. V. Kulkarni and C. Trapp, ibid., 92, 4809 (1970). (c) This work
was presented in part at the Symposium on Fluorine-Containing Free
Radicals held during the 158th National Meeting of the American
Chemical Society, New York, N. Y., Sept 8-12, 1969. (d) Details of
this work may be found in the thesis gf S. V. Kulkarni, submitted in
partial fulfillment of the requirements for the Ph.D. degree, to the
graduate school of Illinois Institute of Technology, Chicago, Ill,, June
1969.
(2) Address correspondence to this author at the Department of
Chemistry, University of Louisville,
(3) (a) H. M. McConnell, J. Chem. Phys., 24, 632, 764 (1956);
(b) H. S. Jarrett, ibid., 25, 1289 (1956).
results of these early esr investigation^,^-' as well as
some early nuclear magnetic resonance (nmr) s t u d i e ~ , ~ , ~
indicated that the simple linear relationship
QF = QebFPc" (1)
analogous to McConnells' relationship for protons
may not be adequate to describe the data on fluorinated
compounds.
In order to explain their nmr results on a series of
fluorine-substituted aminotroponiminates, Eaton, et
~ l . , * , ~proposed a modified relationship, which we will
write as
OF = QCF~PC"3. QFC~PF" (2)
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Kulkami, Trapp Esr F-19 Hyperfine Splittings of Triphenylmethyl Radicals