Antibiotics in Pregnancy V Sachar MD Some antibiotics are known teratogens that can cause malformations in developing embryos and fetuses. Common infections during pregnancy include urinary tract infections and pneumonia. Commonly used antibiotics like amoxicillin, ampicillin, and penicillin are category B and generally considered safe during pregnancy. Most antibiotics are safe according to guidelines from ACOG, but category C drugs require discussing risks and benefits with a medical practitioner.