This article summarizes a study which found that a single dose of the ChAdOx1 nCoV-19 vaccine prevented SARS-CoV-2 pneumonia in rhesus macaques. The vaccine elicited a robust immune response in mice and rhesus macaques without evidence of immune-enhanced disease. When vaccinated macaques were challenged with SARS-CoV-2, they had significantly lower viral loads and no pneumonia, unlike control animals who developed pneumonia. This demonstrates the vaccine's potential to prevent COVID-19 disease in humans.
Seroepidemiology for MERS coronavirus using microneutralisation and pseudopar...Ranawaka A.P.M Perera
We describe a novel spike pseudoparticle neutralisation
assay (ppNT) for seroepidemiological studies on
Middle East respiratory syndrome coronavirus (MERSCoV)
and apply this assay together with conventional
microneutralisation (MN) tests to investigate 1,343
human and 625 animal sera. The sera were collected
in Egypt as a region adjacent to areas where MERS has
been described, and in Hong Kong, China as a control
region. Sera from dromedary camels had a high prevalence
of antibody reactive to MERS-CoV by MERS NT
(93.6%) and MERS ppNT (98.2%) assay. The antibody
titres ranged up to 1,280 and higher in MN assays
and 10,240 and higher in ppNT assays. No other
investigated species had any antibody reactivity to
MERS-CoV. While seropositivity does not exclude the
possibility of infection with a closely related virus, our
data highlight the need to attempt detection of MERSCoV
or related coronaviruses in dromedary camels. The
data show excellent correlation between the conventional
MN assay and the novel ppNT assay. The newly
developed ppNT assay does not require Biosafety Level
3 containment and is thus a relatively high-throughput
assay, well suited for large-scale seroepidemiology
studies which are needed to better understand the
ecology and epidemiology of MERS-CoV.
mRNA rather than DNA may become the nucleotide framework for new classes of drugs and vaccines. Exciting preclinical results in prophylaxis and initial clinical data in oncology suggest that mRNA technology could be translated into improvements in lung cancer and other diseases.
Seroepidemiology for MERS coronavirus using microneutralisation and pseudopar...Ranawaka A.P.M Perera
We describe a novel spike pseudoparticle neutralisation
assay (ppNT) for seroepidemiological studies on
Middle East respiratory syndrome coronavirus (MERSCoV)
and apply this assay together with conventional
microneutralisation (MN) tests to investigate 1,343
human and 625 animal sera. The sera were collected
in Egypt as a region adjacent to areas where MERS has
been described, and in Hong Kong, China as a control
region. Sera from dromedary camels had a high prevalence
of antibody reactive to MERS-CoV by MERS NT
(93.6%) and MERS ppNT (98.2%) assay. The antibody
titres ranged up to 1,280 and higher in MN assays
and 10,240 and higher in ppNT assays. No other
investigated species had any antibody reactivity to
MERS-CoV. While seropositivity does not exclude the
possibility of infection with a closely related virus, our
data highlight the need to attempt detection of MERSCoV
or related coronaviruses in dromedary camels. The
data show excellent correlation between the conventional
MN assay and the novel ppNT assay. The newly
developed ppNT assay does not require Biosafety Level
3 containment and is thus a relatively high-throughput
assay, well suited for large-scale seroepidemiology
studies which are needed to better understand the
ecology and epidemiology of MERS-CoV.
mRNA rather than DNA may become the nucleotide framework for new classes of drugs and vaccines. Exciting preclinical results in prophylaxis and initial clinical data in oncology suggest that mRNA technology could be translated into improvements in lung cancer and other diseases.
Sensitivity and Specificity of an In-house Sandwich ELISA Kit for Newcastle D...Dr. Md. Ehsanul Haque
Of all serological tests enzyme-linked immunosorbent assay (ELISA) is still considered the gold standard for the detection of antigens and antibodies of either macro or micro-organisms worldwide. The ELISA kits for serum antibody detection against many viruses and other micro-organisms of both man and animals are available in the market. Whereas, antigen detection ELISA kits for Newcastle disease virus
(NDV) is not yet available in Bangladesh. The Present study was designed for the development of an economically feasible In-house Sandwich ELISA and to test its sensitivity and specificity for the detection of NDV antigens from clinically suspected field samples. 96-well flat bottom polystyrene plates coated with hyperimmune polyclonal serum against NDV raised in rabbits was used to capture NDV
antigens. The anti-rabbit IgG and DAB with 30% H2O2 were used as conjugate and substrate respectively for standardization of the test method. The plate coated with serum diluted 10-3 was found suitable for capturing maximum antigen of NDV by the In-house Sandwich ELISA. The cut-off value of the present ELISA test was calculated as 0.855 and was able to capture the viral antigen present in the 10-4 fold
dilution of allantoic fluid (AF) which is equivalent to 1HA unit, indicating the highest degree of sensitivity of the newly developed ELISA. In case of field samples, the newly developed ELISA kit was able to detect 100% viral antigens of NDV present in the feces, 95.50% of the brain tissue and oro-nasal swab and 94.12% of colon swab samples of either naturally and experimentally infected birds in this study. The
ND virus specific polyclonal antibody used in the kit bind only with ND virus without any cross reactive antigens of other viruses of chicken like Avian influenza virus (AIV) and Infectious bursal disease viruses (IBDV). Therefore, findings of the present study clearly indicates that the newly developed In-house Sandwich ELISA kit can be used for rapid confirmatory diagnosis of Newcastle disease (ND) with minimum cost, using any kind of field samples from either sick or dead birds.
El coronavirus, relacionado con el virus que causa el SARS (síndrome respiratorio agudo severo), ha desencadenado un renovado debate sobre si las variantes de laboratorio de ingeniería de virus con posible potencial pandémico valen los riesgos.
En un artículo publicado en Nature Medicine 1 el 9 de noviembre, los científicos investigaron un virus llamado SHC014, que se encuentra en murciélagos de herradura en China. Los investigadores crearon un virus quimérico, compuesto por una proteína de superficie de SHC014 y la columna vertebral de un virus del SARS que se había adaptado para crecer en ratones e imitar una enfermedad humana. La quimera infectó las células de las vías respiratorias humanas, lo que demuestra que la proteína de superficie de SHC014 tiene la estructura necesaria para unirse a un receptor clave en las células e infectarlas. También causó enfermedades en ratones, pero no los mató.
----------------------
Engineered bat virus stirs debate over risky research
Lab-made coronavirus related to SARS can infect human cells.
12 November 2015
An experiment that created a hybrid version of a bat coronavirus — one related to the virus that causes SARS (severe acute respiratory syndrome) — has triggered renewed debate over whether engineering lab variants of viruses with possible pandemic potential is worth the risks.
In an article published in Nature Medicine 1 on 9 November, scientists investigated a virus called SHC014, which is found in horseshoe bats in China. The researchers created a chimaeric virus, made up of a surface protein of SHC014 and the backbone of a SARS virus that had been adapted to grow in mice and to mimic human disease. The chimaera infected human airway cells — proving that the surface protein of SHC014 has the necessary structure to bind to a key receptor on the cells and to infect them. It also caused disease in mice, but did not kill them
Novel research aimed at finding a cure for AIDS requires animal models responding to human antiretroviral drugs. However, there have been few antiretrovirals cross-active against the simian viruses. In this study, we expanded the arsenal of drugs active against the simian retrovirus SIVmac251 and showed that this virus is inhibited by the protease inhibitor, darunavir, and the CCR5 blocker, maraviroc. Administration of these two drugs in combination with the reverse transcriptase inhibitors, tenofovir and emtricitabine, and the integrase inhibitor, raltegravir, resulted in prolonged plasma viral loads below assay detection limits, and, surprisingly, restricted the viral reservoir, a marker of which is viral DNA. We then decided to employ this multidrug regimen (termed “highly intensified ART”) in order to increase the potency of a previous strategy based on the gold drug auranofin, which recently proved able to restrict the viral reservoir in vivo. A short course of highly intensified ART following the previous treatment resulted, upon therapy suspension, in a remarkably spontaneous control of the infection, that may pave the way to a persistent suppression of viremia in the absence of ART. These results corroborate the robustness of the macaque AIDS model as a vanguard for potentially future treatments for HIV in humans.
Phylogenetic Analysis of Newcastle Disease Virus from Indonesian Isolates Bas...UniversitasGadjahMada
This study was conducted to analyze phylogenetic of Indonesian newcastle disease virus(NDV) isolates based on fusion (F) protein-encoding gene, with aim to determine which genotype group of Indonesian NDV isolates, compared to vaccine strain that circulating in Indonesia.
Dr. Hanchun Yang - Pathogenesis and control of Chinese highly pathogenic Porc...John Blue
Pathogenesis and control of Chinese highly pathogenic Porcine Reproductive & Respiratory Syndrome (PRRSV) - Dr. Hanchun Yang, China Agricultural University, from the 2016 North American PRRS Symposium, December 3‐4, 2016, Chicago, Illinois, USA.
More presentations at http://www.swinecast.com/2016-north-american-prrs-symposium
Candidia Species Commonly (Opportunistic human Pathogens)
C.albicans
C.glabata
C.guilliermandii
C.krusei
C.lusitaniae
C.parapsilosis
C.tropicalis
Candiia Species Uncommonly: 18 species
Recombinant low-seroprevalent adenoviral vectors Ad26 and Ad35Arun kumar
RSV is an important cause of lower respiratory tract infections in children, the elderly and in those with
underlying medical conditions. Although the high disease burden indicates an urgent need for a vaccine
against RSV, no licensed RSV vaccine is currently available. We developed an RSV vaccine candidate
based on the low-seroprevalent human adenovirus serotypes 26 and 35 (Ad26 and Ad35) encoding the
RSV fusion (F) gene. Single immunization of mice with either one of these vectors induced high titers of
RSV neutralizing antibodies and high levels of F specific interferon-gamma-producing T cells. A Th1-type
immune response was indicated by a high IgG2a/IgG1 ratio of RSV-specific antibodies, strong induction
of RSV-specific interferon-gamma and tumor necrosis factor-alpha cytokine producing CD8 Tcells, and
low RSV-specific CD4 T-cell induction. Both humoral and cellular responses were increased upon a boost
with RSV-F expressing heterologous adenovirus vector (Ad35 boost after Ad26 prime or vice versa). Both
single immunization and prime-boost immunization of cotton rats induced high and long-lasting RSV
neutralizing antibody titers and protective immunity against lung and nasal RSV A2 virus load up to at
least 30 weeks after immunization. Cotton rats were also completely protected against challenge with
a RSV B strain (B15/97) after heterologous prime-boost immunization. Lungs from vaccinated animals
showed minimal damage or inflammatory infiltrates post-challenge, in contrast to animals vaccinated
with formalin-inactivated virus. Our results suggest that recombinant human adenoviral Ad26 and Ad35
vectors encoding the RSV F gene have the potential to provide broad and durable protection against RSV
in humans, and appear safe to be investigated in infants.
Sensitivity and Specificity of an In-house Sandwich ELISA Kit for Newcastle D...Dr. Md. Ehsanul Haque
Of all serological tests enzyme-linked immunosorbent assay (ELISA) is still considered the gold standard for the detection of antigens and antibodies of either macro or micro-organisms worldwide. The ELISA kits for serum antibody detection against many viruses and other micro-organisms of both man and animals are available in the market. Whereas, antigen detection ELISA kits for Newcastle disease virus
(NDV) is not yet available in Bangladesh. The Present study was designed for the development of an economically feasible In-house Sandwich ELISA and to test its sensitivity and specificity for the detection of NDV antigens from clinically suspected field samples. 96-well flat bottom polystyrene plates coated with hyperimmune polyclonal serum against NDV raised in rabbits was used to capture NDV
antigens. The anti-rabbit IgG and DAB with 30% H2O2 were used as conjugate and substrate respectively for standardization of the test method. The plate coated with serum diluted 10-3 was found suitable for capturing maximum antigen of NDV by the In-house Sandwich ELISA. The cut-off value of the present ELISA test was calculated as 0.855 and was able to capture the viral antigen present in the 10-4 fold
dilution of allantoic fluid (AF) which is equivalent to 1HA unit, indicating the highest degree of sensitivity of the newly developed ELISA. In case of field samples, the newly developed ELISA kit was able to detect 100% viral antigens of NDV present in the feces, 95.50% of the brain tissue and oro-nasal swab and 94.12% of colon swab samples of either naturally and experimentally infected birds in this study. The
ND virus specific polyclonal antibody used in the kit bind only with ND virus without any cross reactive antigens of other viruses of chicken like Avian influenza virus (AIV) and Infectious bursal disease viruses (IBDV). Therefore, findings of the present study clearly indicates that the newly developed In-house Sandwich ELISA kit can be used for rapid confirmatory diagnosis of Newcastle disease (ND) with minimum cost, using any kind of field samples from either sick or dead birds.
El coronavirus, relacionado con el virus que causa el SARS (síndrome respiratorio agudo severo), ha desencadenado un renovado debate sobre si las variantes de laboratorio de ingeniería de virus con posible potencial pandémico valen los riesgos.
En un artículo publicado en Nature Medicine 1 el 9 de noviembre, los científicos investigaron un virus llamado SHC014, que se encuentra en murciélagos de herradura en China. Los investigadores crearon un virus quimérico, compuesto por una proteína de superficie de SHC014 y la columna vertebral de un virus del SARS que se había adaptado para crecer en ratones e imitar una enfermedad humana. La quimera infectó las células de las vías respiratorias humanas, lo que demuestra que la proteína de superficie de SHC014 tiene la estructura necesaria para unirse a un receptor clave en las células e infectarlas. También causó enfermedades en ratones, pero no los mató.
----------------------
Engineered bat virus stirs debate over risky research
Lab-made coronavirus related to SARS can infect human cells.
12 November 2015
An experiment that created a hybrid version of a bat coronavirus — one related to the virus that causes SARS (severe acute respiratory syndrome) — has triggered renewed debate over whether engineering lab variants of viruses with possible pandemic potential is worth the risks.
In an article published in Nature Medicine 1 on 9 November, scientists investigated a virus called SHC014, which is found in horseshoe bats in China. The researchers created a chimaeric virus, made up of a surface protein of SHC014 and the backbone of a SARS virus that had been adapted to grow in mice and to mimic human disease. The chimaera infected human airway cells — proving that the surface protein of SHC014 has the necessary structure to bind to a key receptor on the cells and to infect them. It also caused disease in mice, but did not kill them
Novel research aimed at finding a cure for AIDS requires animal models responding to human antiretroviral drugs. However, there have been few antiretrovirals cross-active against the simian viruses. In this study, we expanded the arsenal of drugs active against the simian retrovirus SIVmac251 and showed that this virus is inhibited by the protease inhibitor, darunavir, and the CCR5 blocker, maraviroc. Administration of these two drugs in combination with the reverse transcriptase inhibitors, tenofovir and emtricitabine, and the integrase inhibitor, raltegravir, resulted in prolonged plasma viral loads below assay detection limits, and, surprisingly, restricted the viral reservoir, a marker of which is viral DNA. We then decided to employ this multidrug regimen (termed “highly intensified ART”) in order to increase the potency of a previous strategy based on the gold drug auranofin, which recently proved able to restrict the viral reservoir in vivo. A short course of highly intensified ART following the previous treatment resulted, upon therapy suspension, in a remarkably spontaneous control of the infection, that may pave the way to a persistent suppression of viremia in the absence of ART. These results corroborate the robustness of the macaque AIDS model as a vanguard for potentially future treatments for HIV in humans.
Phylogenetic Analysis of Newcastle Disease Virus from Indonesian Isolates Bas...UniversitasGadjahMada
This study was conducted to analyze phylogenetic of Indonesian newcastle disease virus(NDV) isolates based on fusion (F) protein-encoding gene, with aim to determine which genotype group of Indonesian NDV isolates, compared to vaccine strain that circulating in Indonesia.
Dr. Hanchun Yang - Pathogenesis and control of Chinese highly pathogenic Porc...John Blue
Pathogenesis and control of Chinese highly pathogenic Porcine Reproductive & Respiratory Syndrome (PRRSV) - Dr. Hanchun Yang, China Agricultural University, from the 2016 North American PRRS Symposium, December 3‐4, 2016, Chicago, Illinois, USA.
More presentations at http://www.swinecast.com/2016-north-american-prrs-symposium
Candidia Species Commonly (Opportunistic human Pathogens)
C.albicans
C.glabata
C.guilliermandii
C.krusei
C.lusitaniae
C.parapsilosis
C.tropicalis
Candiia Species Uncommonly: 18 species
Recombinant low-seroprevalent adenoviral vectors Ad26 and Ad35Arun kumar
RSV is an important cause of lower respiratory tract infections in children, the elderly and in those with
underlying medical conditions. Although the high disease burden indicates an urgent need for a vaccine
against RSV, no licensed RSV vaccine is currently available. We developed an RSV vaccine candidate
based on the low-seroprevalent human adenovirus serotypes 26 and 35 (Ad26 and Ad35) encoding the
RSV fusion (F) gene. Single immunization of mice with either one of these vectors induced high titers of
RSV neutralizing antibodies and high levels of F specific interferon-gamma-producing T cells. A Th1-type
immune response was indicated by a high IgG2a/IgG1 ratio of RSV-specific antibodies, strong induction
of RSV-specific interferon-gamma and tumor necrosis factor-alpha cytokine producing CD8 Tcells, and
low RSV-specific CD4 T-cell induction. Both humoral and cellular responses were increased upon a boost
with RSV-F expressing heterologous adenovirus vector (Ad35 boost after Ad26 prime or vice versa). Both
single immunization and prime-boost immunization of cotton rats induced high and long-lasting RSV
neutralizing antibody titers and protective immunity against lung and nasal RSV A2 virus load up to at
least 30 weeks after immunization. Cotton rats were also completely protected against challenge with
a RSV B strain (B15/97) after heterologous prime-boost immunization. Lungs from vaccinated animals
showed minimal damage or inflammatory infiltrates post-challenge, in contrast to animals vaccinated
with formalin-inactivated virus. Our results suggest that recombinant human adenoviral Ad26 and Ad35
vectors encoding the RSV F gene have the potential to provide broad and durable protection against RSV
in humans, and appear safe to be investigated in infants.
A PRESENTATION DESCRIPS RESPERATORY INFECTIONS CAUSED BY RSV AND PATHOGENESIS , DIAGNOSIS , TREATMENT, VACCINATION,STRUCTRUE AND LIFE CYCLE OF THIS VIRUS
Susan Little, MD
Professor of Medicine
Co-Director, AntiViral Research Center
Division of Infectious Diseases & Global Public Health
Department of Medicine
University of California, San Diego
A brief overview of the process of vaccine production, clinical trials, and licensing, along with a summary of the different vaccines platforms and vaccine candidates.
The primary treatment of hemorrhagic shock is to control the source of bleeding as soon as possible and to replace fluid.
In controlled hemorrhagic shock (CHS), where the source of bleeding has been occluded, fluid replacement is aimed toward normalization of hemodynamic parameters. In uncontrolled hemorrhagic shock (UCHS), in which the bleeding has temporarily stopped because of hypotension, vasoconstriction, and clot formation, fluid treatment is aimed at restoration of radial pulse or restoration of sensorium or obtaining a blood pressure of 80 mm Hg by aliquots of 250 mL of lactated Ringer's solution (hypotensive resuscitation).
When evacuation time is shorter than 1 hour (usually urban trauma), immediate evacuation to a surgical facility is indicated after airway and breathing (A, B) have been secured ("scoop and run"). Precious time is not wasted by introducing an intravenous line. When expected evacuation time exceeds 1 hour, an intravenous line is introduced and fluid treatment is started before evacuation. The resuscitation should occur before, or concurrently with, any diagnostic studies.
Crystalloid is the first fluid of choice for resuscitation. Immediately administer 2 L of isotonic sodium chloride solution or lactated Ringer’s solution in response to shock from blood loss. Fluid administration should continue until the patient's hemodynamics become stabilized. Because crystalloids quickly leak from the vascular space, each liter of fluid expands the blood volume by 20-30%; therefore, 3 L of fluid need to be administered to raise the intravascular volume by 1 L.
Alternatively, colloids restore volume in a 1:1 ratio. Currently available colloids include human albumin, hydroxy-ethyl starch products (mixed in either 0.9% isotonic sodium chloride solution or lactated Ringer’s solution), or hypertonic saline-dextran combinations. The sole product that is avoided routinely in large-volume (>1500 mL/d) restoration is the hydroxy-ethyl starch product mixed in 0.9% isotonic sodium chloride solution because it has been associated with the induction of coagulopathy. The other products have not been so implicated.
In patients with hemorrhagic shock, hypertonic saline has the theoretical benefit of increasing intravascular volume with only small amounts of fluid. The combination of dextran and hypertonic saline may be beneficial in situations where infusion of large volumes of fluid may be harmful, such as in elderly persons with impaired cardiac activity. Additional trials will be required before this combination is accepted as standard of care.
Anatomy of the Thorax
b. Complaints
c. Inspection
d. Pathological forms of the chest
e. Breathing rate & types
f. Palpation of the chest
g. Percussion of chest
h. Auscultation of chest
lutathione (GSH) is an antioxidant in plants, animals, fungi, and some bacteria and archaea.Glutathione is capable of preventing damage to important cellular components caused by reactive oxygen species such as free radicals, peroxides, lipid peroxides, and heavy metals. It is a tripeptide with a gamma peptide linkage between the carboxyl group of the glutamate side chain and cysteine. Glutathione (GSH) participates in leukotriene synthesis and is a cofactor for the enzyme glutathione peroxidase. It also plays a role in the hepatic biotransformation and detoxification process; it acts as a hydrophilic molecule that is added to other lipophilic toxins or wastes prior to entering biliary excretion.
A presentation on professionalism in medicine, by students.
At the root of professionalism is our profession. A profession requires acquisition and application of a body of knowledge and technical skills. The individuals in a profession are bound together by a shared commitment. Members of a profession regulate themselves. In medicine, physicians regulate themselves through state medical boards, as well as hospital committees and other peer-review groups. Those in a profession practice in accord with a code of ethics. Finally, a profession has a contract with society.
In a patient encounter, we consider a right and good healing action for that patient in his or her particular circumstances.
A right healing action is one informed by scientific and clinical evidence.
A good action, in contrast, takes into account the patient's values and preferences and is consistent with the physician's own clinical judgment.
A German biochemist, Dr. Otto Warburg showed in 1928 that
tumor cells have a higher rate of glucose metabolism.
▫ He showed that tumor cells convert ten times more glucose
into lactate into glucose (in a given time), under aerobic
conditions.
▫ It is said to be an adaptation of cancer cells, to counter the
variability in energy demand with time. They show high
glycolytic metabolism even with oxygen present.
These lecture slides, by Dr Sidra Arshad, offer a quick overview of physiological basis of a normal electrocardiogram.
Learning objectives:
1. Define an electrocardiogram (ECG) and electrocardiography
2. Describe how dipoles generated by the heart produce the waveforms of the ECG
3. Describe the components of a normal electrocardiogram of a typical bipolar leads (limb II)
4. Differentiate between intervals and segments
5. Enlist some common indications for obtaining an ECG
Study Resources:
1. Chapter 11, Guyton and Hall Textbook of Medical Physiology, 14th edition
2. Chapter 9, Human Physiology - From Cells to Systems, Lauralee Sherwood, 9th edition
3. Chapter 29, Ganong’s Review of Medical Physiology, 26th edition
4. Electrocardiogram, StatPearls - https://www.ncbi.nlm.nih.gov/books/NBK549803/
5. ECG in Medical Practice by ABM Abdullah, 4th edition
6. ECG Basics, http://www.nataliescasebook.com/tag/e-c-g-basics
Ozempic: Preoperative Management of Patients on GLP-1 Receptor Agonists Saeid Safari
Preoperative Management of Patients on GLP-1 Receptor Agonists like Ozempic and Semiglutide
ASA GUIDELINE
NYSORA Guideline
2 Case Reports of Gastric Ultrasound
Knee anatomy and clinical tests 2024.pdfvimalpl1234
This includes all relevant anatomy and clinical tests compiled from standard textbooks, Campbell,netter etc..It is comprehensive and best suited for orthopaedicians and orthopaedic residents.
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Ve...kevinkariuki227
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
micro teaching on communication m.sc nursing.pdfAnurag Sharma
Microteaching is a unique model of practice teaching. It is a viable instrument for the. desired change in the teaching behavior or the behavior potential which, in specified types of real. classroom situations, tends to facilitate the achievement of specified types of objectives.
New Drug Discovery and Development .....NEHA GUPTA
The "New Drug Discovery and Development" process involves the identification, design, testing, and manufacturing of novel pharmaceutical compounds with the aim of introducing new and improved treatments for various medical conditions. This comprehensive endeavor encompasses various stages, including target identification, preclinical studies, clinical trials, regulatory approval, and post-market surveillance. It involves multidisciplinary collaboration among scientists, researchers, clinicians, regulatory experts, and pharmaceutical companies to bring innovative therapies to market and address unmet medical needs.
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Lung Cancer: Artificial Intelligence, Synergetics, Complex System Analysis, S...Oleg Kshivets
RESULTS: Overall life span (LS) was 2252.1±1742.5 days and cumulative 5-year survival (5YS) reached 73.2%, 10 years – 64.8%, 20 years – 42.5%. 513 LCP lived more than 5 years (LS=3124.6±1525.6 days), 148 LCP – more than 10 years (LS=5054.4±1504.1 days).199 LCP died because of LC (LS=562.7±374.5 days). 5YS of LCP after bi/lobectomies was significantly superior in comparison with LCP after pneumonectomies (78.1% vs.63.7%, P=0.00001 by log-rank test). AT significantly improved 5YS (66.3% vs. 34.8%) (P=0.00000 by log-rank test) only for LCP with N1-2. Cox modeling displayed that 5YS of LCP significantly depended on: phase transition (PT) early-invasive LC in terms of synergetics, PT N0—N12, cell ratio factors (ratio between cancer cells- CC and blood cells subpopulations), G1-3, histology, glucose, AT, blood cell circuit, prothrombin index, heparin tolerance, recalcification time (P=0.000-0.038). Neural networks, genetic algorithm selection and bootstrap simulation revealed relationships between 5YS and PT early-invasive LC (rank=1), PT N0—N12 (rank=2), thrombocytes/CC (3), erythrocytes/CC (4), eosinophils/CC (5), healthy cells/CC (6), lymphocytes/CC (7), segmented neutrophils/CC (8), stick neutrophils/CC (9), monocytes/CC (10); leucocytes/CC (11). Correct prediction of 5YS was 100% by neural networks computing (area under ROC curve=1.0; error=0.0).
CONCLUSIONS: 5YS of LCP after radical procedures significantly depended on: 1) PT early-invasive cancer; 2) PT N0--N12; 3) cell ratio factors; 4) blood cell circuit; 5) biochemical factors; 6) hemostasis system; 7) AT; 8) LC characteristics; 9) LC cell dynamics; 10) surgery type: lobectomy/pneumonectomy; 11) anthropometric data. Optimal diagnosis and treatment strategies for LC are: 1) screening and early detection of LC; 2) availability of experienced thoracic surgeons because of complexity of radical procedures; 3) aggressive en block surgery and adequate lymph node dissection for completeness; 4) precise prediction; 5) adjuvant chemoimmunoradiotherapy for LCP with unfavorable prognosis.
Tom Selleck Health: A Comprehensive Look at the Iconic Actor’s Wellness Journeygreendigital
Tom Selleck, an enduring figure in Hollywood. has captivated audiences for decades with his rugged charm, iconic moustache. and memorable roles in television and film. From his breakout role as Thomas Magnum in Magnum P.I. to his current portrayal of Frank Reagan in Blue Bloods. Selleck's career has spanned over 50 years. But beyond his professional achievements. fans have often been curious about Tom Selleck Health. especially as he has aged in the public eye.
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Introduction
Many have been interested in Tom Selleck health. not only because of his enduring presence on screen but also because of the challenges. and lifestyle choices he has faced and made over the years. This article delves into the various aspects of Tom Selleck health. exploring his fitness regimen, diet, mental health. and the challenges he has encountered as he ages. We'll look at how he maintains his well-being. the health issues he has faced, and his approach to ageing .
Early Life and Career
Childhood and Athletic Beginnings
Tom Selleck was born on January 29, 1945, in Detroit, Michigan, and grew up in Sherman Oaks, California. From an early age, he was involved in sports, particularly basketball. which played a significant role in his physical development. His athletic pursuits continued into college. where he attended the University of Southern California (USC) on a basketball scholarship. This early involvement in sports laid a strong foundation for his physical health and disciplined lifestyle.
Transition to Acting
Selleck's transition from an athlete to an actor came with its physical demands. His first significant role in "Magnum P.I." required him to perform various stunts and maintain a fit appearance. This role, which he played from 1980 to 1988. necessitated a rigorous fitness routine to meet the show's demands. setting the stage for his long-term commitment to health and wellness.
Fitness Regimen
Workout Routine
Tom Selleck health and fitness regimen has evolved. adapting to his changing roles and age. During his "Magnum, P.I." days. Selleck's workouts were intense and focused on building and maintaining muscle mass. His routine included weightlifting, cardiovascular exercises. and specific training for the stunts he performed on the show.
Selleck adjusted his fitness routine as he aged to suit his body's needs. Today, his workouts focus on maintaining flexibility, strength, and cardiovascular health. He incorporates low-impact exercises such as swimming, walking, and light weightlifting. This balanced approach helps him stay fit without putting undue strain on his joints and muscles.
Importance of Flexibility and Mobility
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2. Article of Choice:
▸ Source: PubMed
▸ DOI: https://doi.org/10.1101/2020.05.13.093195
▸ Authors: A team of researchers from the
Oxford University.
Neeltje van Doremalen, Teresa Lambe, Alexandra Spencer, Sandra Belij-
Rammerstorfer, Jyothi N. Purushotham, Julia
R. Port, Victoria Avanzato, Trenton Bushmaker, Amy Flaxman, Marta Ulaszew
ska, Friederike Feldmann, Elizabeth
R. Allen, Hannah Sharpe, Jonathan Schulz, Myndi Holbrook, Atsushi Okumura,
Kimberly Meade-White, Lizzette Pérez-
Pérez, Cameron Bissett, Ciaran Gilbride, Brandi
N. Williamson, Rebecca Rosenke, Dan Long, Alka Ishwarbhai, Reshma Kailath
, Louisa Rose, Susan Morris, Claire Powers, Jamie Lovaglio, Patrick
W. Hanley, Dana Scott, Greg Saturday, Emmie de Wit, Sarah
C. Gilbert, Vincent J. Munster.
▸ It is a pre-print article that is awaiting peer
review and publication.
4. Analysis: Title
▸ The title of this article gives a clear, concise and simple
representation of the contents of the paper.
▸ The inclusion of the name of the vaccine (ChAdOx1) is
inevitable although it sounds sophisticated.
▸ Title would attract non-experts in the medical field as it is
given in an comprehensible manner.
5. Abstract:
Severe acute respiratory syndrome coronavirus-2
(SARS-CoV-2) emerged in December 20191,2 and is
responsible for the COVID-19 pandemic3. Vaccines are
an essential countermeasure urgently needed to control
the pandemic4. Here, we show that the adenovirus-
vectored vaccine ChAdOx1 nCoV-19, encoding the
spike protein of SARS-CoV-2, is immunogenic in mice,
eliciting a robust humoral and cell-mediated response.
This response was not Th2 dominated, as demonstrated
by IgG subclass and cytokine expression profiling. A
single vaccination with ChAdOx1 nCoV-19 induced a
humoral and cellular immune response in rhesus
macaques. We observed a significantly reduced viral
load in bronchoalveolar lavage fluid and respiratory tract
tissue of vaccinated animals challenged with SARS-
CoV-2 compared with control animals, and no
pneumonia was observed in vaccinated rhesus
macaques. Importantly, no evidence of immune-
enhanced disease following viral challenge in vaccinated
animals was observed. ChAdOx1 nCoV-19 is currently
under investigation in a phase I clinical trial. Safety,
immunogenicity and efficacy against symptomatic PCR-
positive COVID-19 disease will now be assessed in
randomized controlled human clinical trials.
We previously demonstrated that a single dose of
ChAdOx1 MERS, a chimpanzee adeno (ChAd)-vectored
vaccine platform encoding the spike protein of MERS-
CoV, protected non-human primates (NHPs) against
MERS-CoV-induced disease5. Here, we designed a
ChAdOx1-vectored vaccine encoding a codon-optimised
full-length spike protein of SARS-CoV-2
(YP_009724390.1) with a human tPA leader sequence,
provisionally named ChAdOx1 nCoV-19, similar to the
approach for ChAdOx1 MERS5.
6. Analysis: Abstract
▸ The abstract gives a solid overview of the necessity of the
vaccine and the motive behind this article.
▸ It summarizes the components for a non-expert reader while
paying attention to brevity.
▸ The methods section is also well-represented.
7. Immunogenicity in mice
Two mouse strains (BALB/c, N=5 and outbred CD1,
N=8) were vaccinated intramuscularly (IM) with
ChAdOx1 nCoV-19 or ChAdOx1 GFP, a control vaccine
expressing green fluorescent protein. Humoral and
cellular immunity were studied 9-14 days later. Total
IgG titers were detected against spike protein subunits
S1 and S2 in all vaccinated mice. Profiling of the IgG
subclasses showed a predominantly Th1 response post
vaccination . Virus-specific neutralising antibodies were
detected in all mice vaccinated with ChAdOx1 nCoV-19,
whereas no neutralisation was detected in serum from
mice vaccinated with ChAdOx1 GFP). Splenic T-cell
responses measured by IFN-γ ELISpot and intracellular
cytokine staining (ICS) were detected against peptides
spanning the full length of the spike construct. Again, a
strong Th1-type response was detected post
vaccination as supported by high levels of IFN-γ and
TNF-α, and low levels of IL-4 and IL-10.
8. Immunogenicity in rhesus macaques
We next evaluated the efficacy of ChAdOx1 nCoV-19 in rhesus
macaques, a non-human primate model that displays robust
infection of upper and lower respiratory tract and virus shedding
upon inoculation with SARS-CoV-26. Twenty-eight days before
challenge, 6 animals were vaccinated intramuscularly with 2.5 ×
1010 ChAdOx1 nCoV-19 virus particles each, half of the dose
currently administered in human clinical trials. As a control, three
animals were vaccinated via the same route with the same dose
of ChAdOx1 GFP . Spike-specific antibodies were present as
early as 14 days post vaccination and endpoint IgG titers of 400-
6400 were measured on the day of challenge. Virus-specific
neutralising antibodies were detectable in all vaccinated animals
before challenge (VN titer = 5-40), whereas no virus-specific
neutralising antibodies were detected in control animals. Finally,
SARS-CoV-2 spike specific T-cell responses were detected by
IFN-γ ELISpot assay and involved stimulation of peripheral blood
mononuclear cells (PBMCs) with a peptide library spanning the
full length of the spike protein.
9. Clinical signs
Upon challenge with 2.6 × 106 TCID50 SARS-CoV-
2 to both the upper and lower respiratory tract
the average clinical score of control animals was
higher compared to ChAdOx1 nCoV-19
vaccinated animals. This was significantly
different as determined via Mann-Whitney’s
rank’s test on 3 and 5 DPI. All control animals
showed an increase in respiratory rate, compared
to 3 out of 6 vaccinated animals. Respiratory
signs persisted longer in control animals
10. Viral load in respiratory tract samples
In the control animals, viral genomic RNA (gRNA) was
detected in BAL fluid on all days and viral subgenomic
RNA (sgRNA), indicative of virus replication, was
detected at 3 and 5 days post inoculation (DPI). In
contrast, viral gRNA was detected in only two animals,
either on 3 or 7 DPI, and no viral sgRNA could be
detected in BAL fluid obtained from vaccinated animals
(p=0.0119). Viral gRNA was detected in nose swabs
from all animals and no difference in viral load in nose
swabs was found on any days between vaccinated and
control animals .
Cytokine response
Cytokines in serum were analysed after challenge to
monitor immune responses. We observed an
upregulation in IFN-γ at 1 DPI in ChAdOx1 nCoV-19
vaccinated animals, but not in control animals. No
significant differences were observed between ChAdOx1
nCoV-19 and control animals for TNF-α, IL-2, IL-4, IL-
6, and IL-10.
11. Pulmonary pathology
At 7 days post inoculation, all animals were
euthanized, and tissues were collected. None of the
vaccinated monkeys developed pulmonary
pathology after inoculation with SARS-CoV-2. All
lungs were histologically normal and no evidence of
viral pneumonia nor immune-enhanced
inflammatory disease was observed. In addition, no
SARS-CoV-2 antigen was detected by
immunohistochemistry in the lungs of any of the
vaccinated animals. Two out of 3 control animals
developed some degree of viral interstitial
pneumonia. Lesions were widely separated and
characterized by thickening of alveolar septae by
small amounts of edema fluid and few macrophages
and lymphocytes. Alveoli contained small numbers
of pulmonary macrophages and, rarely, edema.
Type II pneumocyte hyperplasia was observed.
Multifocally, perivascular infiltrates of small
numbers of lymphocytes forming perivascular cuffs
were observed. Immunohistochemistry
demonstrated viral antigen in type I and II
pneumocytes, as well as in alveolar macrophages.
12. Viral load in respiratory tract
Viral gRNA load was high in lung tissue of
control animals and viral sgRNA was
detected in 2 out of 3 control animals. In
contrast, the viral gRNA load was
significantly lower in lung tissue obtained
from vaccinated animals as determined via
Mann-Whitney’s rank test and below limits
of detection in two vaccinated animals.
Viral sgRNA was detected in lung tissue
obtained from 1 out of 6 vaccinated
animals (p<0.0001). Viral gRNA could be
detected in other tissues but was low in
both groups
13. Analysis: Introduction + Results
▸ This article is structured noticeably differently, as different
aspects of the conducted research is briefly introduced in
small sub-sections; the relevant findings are mentioned in
the respective subsections along with figures etc.
▸ Only the data from the experiments conducted by the team
are presented. Graphs & charts are used.
▸ Errors were not mentioned here particularly, but the error
correction made is mentioned in the “Methods” section.
14. Analysis: Figures & Captions
▸ All included figures in the text were numbered.
▸ Captions were included below the respective picture
describing the contents of the figure.
▸ They are all colored pictures, although certain cheaper printed
versions would not include colored images.
▸ Detected patterns among the subjects were shown.
15. Here, we showed that a single vaccination with
ChAdOx1 nCoV-19 is effective in preventing damage
to the lungs upon high dose challenge with SARS-CoV-
2. Similarly a recent study showed that a triple
vaccination regime of a high dose of whole inactivated
SARS-CoV-2 protected rhesus macaques from SARS-
CoV-2 pneumonia7.
Viral loads in BAL fluid and lung tissue of vaccinated
animals were significantly reduced, suggesting that
vaccination prevents virus replication in the lower
respiratory tract. Despite this marked difference in
virus replication in the lungs, reduction in viral
shedding from the nose was not observed. However,
animals were challenged with a high dose of virus via
multiple routes, which likely does not reflect a realistic
human exposure. Whether a lower challenge dose
would result in more efficient protection of the upper
respiratory tract remains to be determined.
Several preclinical studies of vaccines against SARS-
CoV-1 resulted in immunopathology after vaccination
and challenge, with more severe disease in vaccinated
animals than in controls8–10. Importantly, we did not
see any evidence of immune-enhanced disease in
vaccinated animals. The immune response was not
skewed towards a Th2 response in mice nor in NHPs,
there was no increase in clinical signs or virus
replication throughout the study in vaccinated NHPs
compared to controls and no markers of disease
enhancement in lung tissue of NHPs, such as an influx
of neutrophils were observed. These data informed the
start of the phase I clinical trial with ChAdOx1 nCoV-
19 on April 23, 2020. As of May 13, 2020, more than
1000 volunteers have participated in the clinical trials.
This study is thus an important step towards the
development of a safe and efficacious SARS-CoV-2
vaccine.
16. Ethics Statement
Mice – Mice were used in accordance with the UK Animals
(Scientific Procedures) Act under project license number
P9804B4F1 granted by the UK Home Office. Animals were
group housed in IVCs under SPF conditions, with constant
temperature and humidity with lighting on a fixed
light/dark cycle (12-hours/12-hours).
NHPs – Animal experiment approval was provided by the
Institutional Animal Care and Use Committee (IACUC) at
Rocky Mountain Laboratories. Animal experiments were
executed in an Association for Assessment and
Accreditation of Laboratory Animal Care (AALAC)-
approved facility by certified staff, following the basic
principles and guidelines in the NIH Guide for the Care
and Use of Laboratory Animals, the Animal Welfare Act,
United States Department of Agriculture and the United
States Public Health Service Policy on Humane Care and
Use of Laboratory Animals. Rhesus macaques were
housed in individual primate cages allowing social
interactions, in a climate-controlled room with a fixed
light/dark cycle (12-hours/12-hours) and monitored a
minimum of twice daily. Commercial monkey chow,
treats, and fruit were provided by trained personnel.
Water was available ad libitum. Environmental enrichment
consisted of a variety of human interaction, commercial
toys, videos, and music. The Institutional Biosafety
Committee (IBC) approved work with infectious SARS-
CoV-2 virus strains under BSL3 conditions. All sample
inactivation was performed according to IBC approved
standard operating procedures for removal of specimens
from high containment.
17. Generation of vaccine ChAdOx1 nCoV-19
The spike protein of SARS-CoV-2 (Genbank accession number
YP_009724390.1), the surface glycoprotein responsible for receptor
binding and fusion/entry into the host cell, was codon optimised for
expression in human cell lines and synthesised with the tissue
plasminogen activator (tPA) leader sequence at the 5’ end by
GeneArt Gene Synthesis (Thermo Fisher Scientific). The sequence,
encoding SARS-CoV-2 amino acids 2-1273 and tPA leader, was
cloned into a shuttle plasmid using InFusion cloning (Clontech). The
shuttle plasmid encodes a modified human cytomegalovirus major
immediate early promoter (IE CMV) with tetracycline operator (TetO)
sites, poly adenylation signal from bovine growth hormone (BGH),
between Gateway® recombination cloning sites. ChAdOx1 nCoV-19
was prepared using Gateway® recombination technology (Thermo
Fisher Scientific) between the shuttle plasmid described and the
ChAdOx1 destination DNA BAC vector described in11 resulting in the
insertion of the SARS-CoV-2 expression cassette at the E1 locus.
The ChAdOx1 adenovirus genome was excised from the BAC using
unique PmeI sites flanking the adenovirus genome sequence. The
virus was rescued and propagated in T-Rex 293 HEK cells
(Invitrogen) which repress antigen expression during virus
propagation. Purification was by CsCl gradient ultracentrifugation.
Virus titers were determined by hexon immunostaining assay and
viral particles calculated based on spectrophotometry12,13.
18. Study design animal experiments
Mice – Female BALB/cOlaHsd (BALB/c) (Envigo)
and outbred Crl:CD1(ICR) (CD1) (Charles River)
mice of at least 6 weeks of age, were
immunized IM in the musculus tibialis with
6×109 VP of ChAdOx1 nCoV-19 unless
otherwise stated.
NHPs – 9 adult rhesus macaques (8M, 1F) were
randomly divided into two groups of six and
three animals. Group 1 was vaccinated with
ChAdOx1 nCoV-19 at −28 DPI, group 2 was
vaccinated with ChAdOx1 GFP at −28 DPI. All
vaccinations were done with 2.5 ×
1010 VP/animal diluted in sterile PBS. Blood
samples were obtained before vaccination and
14 days thereafter. Animals were challenged
with SARS-CoV-2 strain nCoV-WA1-2020
(MN985325.1) diluted in sterile DMEM on 0
DPI; with administration of 4 mL
intratracheally, 1 mL intranasally, 1 mL orally
and 0.5 mL ocularly of 4 × 105 TCID50/mL virus
suspension. Animals were scored daily by the
same person who was blinded to
study group allocations using a standardized
scoring sheet. Clinical exams were performed
on −28, −14, 0, 1, 3, and 5 and 7 DPI. Nasal
swabs and blood were collected at all exam
dates. BAL was performed on 3, 5, and 7 DPI
by insertion of an endotracheal tube and
bronchoscope into the trachea, then past the
3rd bifurcation, and subsequent installation of
10 mL of sterile saline. Manual suction was
applied to retrieve the BAL sample. Necropsy
was performed on 7 DPI and the following
tissues were collected: cervical lymph node,
mediastinal lymph node, conjunctiva, nasal
mucosa, oropharynx, tonsil, trachea, all six
lung lobes, right and left bronchus, heart, liver,
spleen, kidney, stomach, duodenum, jejunum,
ileum, cecum, colon, urinary bladder.
19. Cells and virus
SARS-CoV-2 strain nCoV-WA1-2020 (MN985325.1) was provided
by CDC, Atlanta, USA. Virus propagation was performed in VeroE6
cells in DMEM supplemented with 2% fetal bovine serum, 1 mM L-
glutamine, 50 U/ml penicillin and 50 μg/ml streptomycin. VeroE6
cells were maintained in DMEM supplemented with 10% fetal bovine
serum, 1 mM L-glutamine, 50 U/ml penicillin and 50 μg/ml
streptomycin.
Virus neutralization assay
Sera were heat-inactivated (30 min, 56 °C), two-fold serial dilutions
were prepared in 2% DMEM and 100 TCID50 of SARS-CoV-2 was
added. After 1hr incubation at 37 °C and 5% CO2, virus:serum
mixture was added to VeroE6 cells and incubated at 37°C and 5%
CO2. At 5 dpi, cytopathic effect was scored. The virus neutralization
titer was expressed as the reciprocal value of the highest dilution of
the serum which still inhibited virus replication.
RNA extraction and quantitative reverse-transcription polymerase chain reaction
Tissues (up to 30 mg) were homogenized in RLT buffer and RNA was extracted using the RNeasy kit
(Qiagen) according to the manufacturer's instructions. RNA was extracted from BAL fluid and nasal
swabs using the QiaAmp Viral RNA kit (Qiagen) according to the manufacturer's instructions. Viral
gRNA14 and sgRNA15 specific assays were used for the detection of viral RNA. Five μl RNA was tested
with the Rotor-GeneTM probe kit (Qiagen) according to instructions of the manufacturer. Dilutions
of SARS-CoV-2 standards with known genome copies were run in parallel.
20. Enzyme-linked immunosorbent assay for mouse sera
MaxiSorp plates (Nunc) were coated with S1 or S2 (The
Native Antigen Company; 50 ng/well) in PBS for overnight
adsorption at 4°C. Plates were washed in PBS/Tween (0.05%
v/v) and wells blocked using casein (ThermoFisher
Scientific) for 1hr at RT. Serially diluted mouse serum
samples were added and incubated overnight at 4°C. Plates
were washed and Alkaline Phosphatase-conjugated goat
anti-mouse IgG (Sigma) was added to all wells for 1hr at RT.
After washing pNPP substrate (Sigma) was added. Optical
density (OD) values for each well were measured at 405 nm.
Endpoint titers were calculated as follows: the log10 OD
against log10 sample dilution was plotted and a regression
analysis of the linear part of this curve allowed calculation
of the endpoint titer with an OD of three times the
background. The same calculation was used for diluting the
sera to the same amounts of total IgG for further testing on
different IgG subclasses with anti-mouse IgG subclass-
specific antibodies (Abcam). The results of the IgG subclass
ELISA are presented using OD values.
ELISpot assay and ICS analysis
Single cell suspension of murine splenocytes were prepared by
passing cells through 70μM cell strainers and ACK lysis prior to
resuspension in complete media. Rhesus macaque PBMCs were
isolated from ethylene diamine tetraaceticacid (EDTA) whole
blood using LeucosepTM tubes (Greiner Bio-one International
GmbH) and Histopaque®-1077 density gradient cell separation
medium (Sigma-Aldrich) according to the manufacturers’
instructions.
Mice – For analysis of IFN-γ production by ELISpot, cells were
stimulated with pools of S1 or S2 peptides (final concentration of
2μg/ml) on IPVH-membrane plates (Millipore) coated with 5μg/ml
anti-mouse IFN-γ (AN18). After 18-20 hours of stimulation, IFN-γ
spot forming cells (SFC) were detected by staining membranes
with anti-mouse IFN-γ biotin (1μg/ml) (R46A2) followed by
streptavidin-Alkaline Phosphatase (1μg/ml) and development with
AP conjugate substrate kit (BioRad, UK).
21. Mice – For analysis of IFN-γ production by ELISpot, cells
were stimulated with pools of S1 or S2 peptides (final
concentration of 2μg/ml) on IPVH-membrane plates
(Millipore) coated with 5μg/ml anti-mouse IFN-γ (AN18).
After 18-20 hours of stimulation, IFN-γ spot forming
cells (SFC) were detected by staining membranes with
anti-mouse IFN-γ biotin (1μg/ml) (R46A2) followed by
streptavidin-Alkaline Phosphatase (1μg/ml) and
development with AP conjugate substrate kit (BioRad,
UK).
For analysis of intracellular cytokine production, cells
were stimulated at 37°C for 6 hours with 2μg/ml S1 or
S2 pools of peptide, media or cell stimulation cocktail
(containing PMA-Ionomycin, Biolegend), together with
1μg/ml Golgi-plug (BD) with the addition of 2μl/ml
CD107a-Alexa647. Cell supernatant was collected and
frozen at –20::J C for subsequent analysis by
MesoScaleDiscovery (MSD) assay (see below). Following
surface staining with CD4-BUV496, CD8-PerCPCy5.5,
CD62L-BV711 and CD127-BV650, cells were fixed with
4% paraformaldehyde and stained intracellularly with
TNF-α-A488, IL-2-PECy7, IL-4-BV605, IL-10-PE and
IFN-γ-e450 diluted in Perm-Wash buffer (BD).
Sample acquisition was performed on a Fortessa (BD) and
data analyzed in FlowJo v9 or FlowJo V10 (TreeStar). An
acquisition threshold was set at a minimum of 5000
events in the live CD3+ gate. Antigen specific T cells were
identified by gating on LIVE/DEAD negative, doublet
negative (FSC-H vs FSC-A), size (FSC-H vs SSC), CD3+,
CD4+ or CD8+ cells and cytokine positive. Cytokine
positive responses are presented after subtraction of the
background response detected in the corresponding
unstimulated sample (media containing CD107a and
Golgi-plug) of each individual spleen sample.
NHPs – IFN-γ ELISpot assay of PBMCs was performed
using the ImmunoSpot® Human IFN- γ Single-Color
Enzymatic ELISpot Assay Kit according to the
manufacturer’s protocol (Cellular Technology Limited).
PBMCs were plated at a concentration of 100,000 cells
per well and were stimulated with four contiguous
peptide pools spanning the length of the SARS-CoV-2
spike protein sequence at a concentration of 2 μg/mL
per peptide (Mimotopes). ELISpot plates were subjected
to overnight formalin inactivation prior to removal from
BSL4 for reading. Analysis was performed using the CTL
ImmunoSpot® Analyzer and ImmunoSpot® Software
(Cellular Technology Limited). Spot forming units (SFU)
per 1.0×106 PBMCs were summed across the 4 peptide
pools for each animal.
22. Measurement of cytokines and chemokines
Mouse samples were assayed using MSD Technology V-PLEX
Mouse Cytokine 29-Plex kit according to the manufacturer’s
instructions. Non-human primate samples were inactivated
with γ-radiation (2 MRad) according to standard operating
procedures and assayed on a Bio-Plex 200 instrument (Bio-
Rad) using the Non-Human Primate Cytokine MILLIPLEX map
23-plex kit (Millipore) according to the manufacturer’s
instructions. LLOD was used for all undetectable and
extrapolated values. Only data for cytokines consistently
above the lower limit of quantification were included in
further anlayses.
Log10 Fold Change (Log10FC) for mouse samples was
calculated as follows:
Log10FC = Log10((Stimulated (pg/ml) + 1) / (Unstimulated
(pg/ml) + 1))
Fold change for NHP samples was calculated as follows:
FC = Concentration (pg/mL) on DX (1, 3, 5, or
7)/Concentration (pg/mL) on D0
Histology and immunohistochemistry
Necropsies and tissue sampling were performed according to
IBC-approved protocols. Lungs were perfused with 10%
formalin and processed for histologic review. Harvested
tissues were fixed for eight days in 10% neutral-buffered
formalin, embedded in paraffin, processed using a VIP-6
Tissue Tek (Sakura Finetek, USA) tissue processor, and
embedded in Ultraffin paraffin polymer (Cancer Diagnostics,
Durham, NC). Samples were sectioned at 5 μm, and resulting
slides were stained with hematoxylin and eosin. Specific
anti-CoV immunoreactivity was detected using an in-house
SARS-CoV-2 nucleocapsid protein rabbit antibody
(Genscript) at a 1:1000 dilution. The IHC assay was carried
out on a Discovery ULTRA automated staining instrument
(Roche Tissue Diagnostics) with a Discovery ChromoMap DAB
(Ventana Medical Systems) kit. All tissue slides were
evaluated by a board-certified veterinary anatomic
pathologist blinded to study group allocations.
Statistical analyses
Two-tailed Mann-Whitney’s rank tests were conducted to
compare differences between groups. A Bonferroni
correction was used to control for type I error rate where
required.
Data availability
Data have been deposited in Figshare:
10.6084/m9.figshare.12290696
23. Analysis: Methods
▸ The methods are described quite elaborately, and they are
given following the results.
▸ Methods of sample analysis, and sample collection are clearly
stated and explained.
▸ As it is an animal-experiment, the relevant ethical guidelines
followed (regional based) are stated.
▸ Statistical method used: Two-tailed Mann-Whitney’s rank test.
They have stated the use of A Bonferroni correction, used
to control for type I error rate where required.
24. Acknowledgements
The authors would like to acknowledge Olubukola
Abiona, Brandon Bailes, Aaron Carmody, Kizzmekia
Corbett, Kathleen Cordova, Jayne Faris, Heinz
Feldmann, Susan Gerber, Barney Graham, Elaine
Haddock, Ryan Kissinger, Michael Jones, Mary Marsh,
Kay Menk, Anita Mora, Stephanie Seifert, Les Shupert,
Brian Smith, Natalie Thornburg, Amanda Weidow,
Marissa Woods, and Kwe Claude Yinda for their
contributions to this study. This work was supported
by the Intramural Research Program of the National
Institute of Allergy and Infectious Diseases (NIAID),
National Institutes of Health (NIH) (1ZIAAI001179-01)
and the Department of Health and Social Care using
UK Aid funding managed by the NIHR.
Competing interests
SCG is a board member of Vaccitech and named as an
inventor on a patent covering use of ChAdOx1-vectored
vaccines and a patent application covering a SARS-CoV-
2 (nCoV-19) vaccine. Teresa Lambe is named as an
inventor on a patent application covering a SARS-CoV-2
(nCoV-19) vaccine. The remaining authors declare no
competing interests.
25. Analysis: Acknowldgements
▸ Multiple funding sources are mentioned, but only a single
grant number is given.
▸ Contributors are given credit by aurthors.
▸ Competing interests are declared.
(A competing interest is anything that interferes with, or could reasonably
be perceived as interfering with, the full and objective presentation or a
publication of research or non-research articles submitted)
26.
27. Analysis: References
▸ The references are presented in an accepted (APA) format.
▸ References are numbered.
▸ The relevant links are all included (PubMed, Google Scholar
& CrossRef)
The Bonferroni correction is a multiple-comparison correction used when several dependent or independent statistical tests are being performed simultaneously (since while a given alpha value. may be appropriate for each individual comparison, it is not for the set of all comparisons).