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21-11-2022 © R R INSTITUTIONS , BANGALORE 1
ACTIVE TRANSPORT: hPEPT1 , ASBT, OCT ,
OATP, BBB-CHOLINE TRANSPORTER
RR COLLEGE OF PHARMACY
SUBMITTED BY: SUBMITTED TO:
PAWAN DHAMALA PROF. Mr. K MAHALINGAM
2nd SEM , M.PHARMACY
DEPARTMENT OF PHARMACEUTICS
21-11-2022 © R R INSTITUTIONS , BANGALORE
2
• INTRODUCTION
• ACTIVE TRANSPORT
• HPEPT1
• ASBT
• OCT
• OATP
• BBB-CHOLINE TRANSPORTER
INTRODUCTION
Historically, drug discovery has focused almost exclusively on
efficacy & selectivity against the biological target.
Drug candidates fail at phase 2 & 3 clinical trail because of
undesirable drug PK properties including ADME & toxicity.
To reduce the attrition rate at more expensive later stage, in-vitro
evaluation of ADME properties in the early phase of drug discovery
has widely adopted.
Many high throughput in-vitro ADME & T property screening assay
have developed & applied successfully.
Fueled by ever increasing computational power & significant advance
of in silico modeling algorithms, numerous computational program
that aim at modeling ADMET properties have emerged.
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 Transporter should be an integral part of any ADMET modelling
program because of their ubiquitous presence on barrier memberanes
& the substantial overlap between their substrates & many drugs.
 Unfortunately, because of our limited understanding of transporters,
most prediction programs do not have a mechanism to incorporated
the effect of active transport.
 However, interest in these transporters has resulted in a relatively large
amount of in vitro data, which in turn have enabled the generation of
pharmacophore & QSAR models for many of them.
 These models have assisted in the understanding of the complex
effects of transporters on drug disposition, including absorption,
distribution & excretion.
ACTIVE TRANSPORT
A comprehensive list of available commercial ADMET modelling
software has been provided till date.
21-11-2022 © R R INSTITUTIONS , BANGALORE 5
The human peptide transporter (hPEPT1) is a low-affinity high-capacity
oligopeptide transport system that transports a diverse range of substrates
including β-lactam antibiotics and angiotensin-converting enzyme (ACE)
inhibitors .
It is mainly expressed in intestine and kidney, affecting drug absorption and
excretion.
A pharmacophore model based on three high affinity substrates (Gly-Sar,
bestatin, and enalapril) recognized two hydrophobic features, one hydrogen
bond donor, one hydrogen bond acceptor, and one negative ionizable
feature to be hPEPT1 transport requirements .
21-11-2022 © R R INSTITUTIONS , BANGALORE 6
hPEPT1
This pharmacophore model was subsequently applied to screen the
CMC database with over 8000 drug like molecules. The antidiabetic
repaglinide and HMG-CoA reductase inhibitor fluvastatin were
suggested by the model and later verified to inhibit hPEPT1 with
submillimolar potency.
This work demonstrated the potential of applying in silico models in
high-throughput database screening.
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 The human apical sodium-dependent bile acid transporter (ASBT) is a
high efficacy, high-capacity transporter expressed on the apical membrane
of intestinal epithelial cells and cholangiocytes.
 It assists absorption of bile acids and their analogs, thus providing an
additional intestinal target for improving drug absorption.
 Baringhaus and colleagues developed a pharmacophore model based on a
training set of 17 chemically diverse inhibitors of ASBT .
 The model revealed ASBT transport requirements as one hydrogen bond
donor, one hydrogen bond acceptor, one negative charge, and three
hydrophobic centers.
 These requirements are in good agreement with a previous 3D-QSAR
model derived from the structure and activity of 30 ASBT inhibitors and
substrates.
ASBT
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The organic cation transporters (OCTs) facilitate the uptake of many
cationic drugs across different barrier membranes from kidney, liver,
and intestine epithelia.
 A broad range of drugs or their metabolites fall into the chemical
class of organic cation (carrying a net positive charge at physiological
pH) including antiarrhythmics, β-adrenoreceptor blocking agents,
antihistamines, antiviral agents, and skeletal muscle-relaxing agents.
Three OCTs have been cloned from different species, OCT1, OCT2,
and OCT3.
 A human OCT1 pharmacophore model was developed by analyzing
the extent of inhibition of TEA uptake in HeLa cells of 22 diverse
molecules.
 The model suggests the transport requirements of human OCT1 as
three hydrophobic features and one positive ionizable feature .
21-11-2022 © R R INSTITUTIONS , BANGALORE 12
OCT
Molecular determinants of substrate binding to human OCT2 and
rabbit OCT2 were recently reported . Both 2D- and 3D-QSAR
analyses were performed to identify and discriminate the binding
requirements of the two orthologs.
The models showed the same chemical features, highlighting their
similarities. However, the orientation of a critical hydrogen bonding
feature set the two orthologs apart. This work illustrates the sensitivity
of in silico modeling in discriminating similar transporters.
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OATP
Organic anion transporting polypeptides (OATPs) influence the plasma
concentration of many drugs by actively transporting them across a
diverse range of tissue membranes such as liver, intestine, lung, and brain.
Because of their broad substrate specificity, OATPs transport not only
organic anionic drugs, as originally thought, but also organic cationic
drugs.
Currently 11 human OATPs have been identified, and the substrate
binding requirements of the best-studied OATP1B1 were successfully
modeled with the metapharmacophore approach recently .
Through assessing a training set of 18 diverse molecules, the
metapharmacophore model identified three hydrophobic features flanked
by two hydrogen bond acceptor features to be the essential requirement
for OATP1B1 transport.
 Similar requirements were derived from another 3D-QSAR study based
on rat Oatp1a5 . 17
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The BBB-choline transporter is a native nutrient transporter that
transports choline, a charged cation, across the BBB into the CNS .
Its active transport assists the BBB penetration of choline like
compounds, and understanding its structural requirements should
afford a more accurate prediction of BBB permeation.
Even though the BBB-choline transporter has not been cloned,
Geldenhuys and colleagues applied a combination of empirical and
theoretical methodologies to study its binding requirements .
The 3DQSAR models were built with empirical Ki data obtained from
in situ rat brain perfusion experiments with a structurally diverse set
of compounds.
20
BBB-Choline Transporter
Three hydrophobic interactions and one hydrogen bonding interaction
surrounding the positively charged ammonium moiety were identified
to be important for BBB-choline transporter recognition.
Even though the model statistical significance is not optimal (q2 <
0.5), it does provide a useful estimation of BBB-choline transporter
binding requirements.
More accurate in silico models could be generated once higher-quality
data from the cloned BBB-choline transporter are available.
21-11-2022 © R R INSTITUTIONS , BANGALORE 21
21-11-2022 © R R INSTITUTIONS , BANGALORE 22
21-11-2022 © R R INSTITUTIONS , BANGALORE 23
• Computer Applications in Pharmaceutical Research & Development
by Sean Ekins
• www.slideshare.com
• www.google.com
• www.youtube.com
21-11-2022 © R R INSTITUTIONS , BANGALORE 24
21-11-2022 © R R INSTITUTIONS , BANGALORE 25

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ACTIVE TRANSPORT- hPEPT1,ASBT,OCT,OATP, BBB-Choline Transporter.pptx

  • 1. 21-11-2022 © R R INSTITUTIONS , BANGALORE 1 ACTIVE TRANSPORT: hPEPT1 , ASBT, OCT , OATP, BBB-CHOLINE TRANSPORTER RR COLLEGE OF PHARMACY SUBMITTED BY: SUBMITTED TO: PAWAN DHAMALA PROF. Mr. K MAHALINGAM 2nd SEM , M.PHARMACY DEPARTMENT OF PHARMACEUTICS
  • 2. 21-11-2022 © R R INSTITUTIONS , BANGALORE 2 • INTRODUCTION • ACTIVE TRANSPORT • HPEPT1 • ASBT • OCT • OATP • BBB-CHOLINE TRANSPORTER
  • 3. INTRODUCTION Historically, drug discovery has focused almost exclusively on efficacy & selectivity against the biological target. Drug candidates fail at phase 2 & 3 clinical trail because of undesirable drug PK properties including ADME & toxicity. To reduce the attrition rate at more expensive later stage, in-vitro evaluation of ADME properties in the early phase of drug discovery has widely adopted. Many high throughput in-vitro ADME & T property screening assay have developed & applied successfully. Fueled by ever increasing computational power & significant advance of in silico modeling algorithms, numerous computational program that aim at modeling ADMET properties have emerged. 21-11-2022 © R R INSTITUTIONS , BANGALORE 3
  • 4. 21-11-2022 © R R INSTITUTIONS , BANGALORE 4  Transporter should be an integral part of any ADMET modelling program because of their ubiquitous presence on barrier memberanes & the substantial overlap between their substrates & many drugs.  Unfortunately, because of our limited understanding of transporters, most prediction programs do not have a mechanism to incorporated the effect of active transport.  However, interest in these transporters has resulted in a relatively large amount of in vitro data, which in turn have enabled the generation of pharmacophore & QSAR models for many of them.  These models have assisted in the understanding of the complex effects of transporters on drug disposition, including absorption, distribution & excretion. ACTIVE TRANSPORT
  • 5. A comprehensive list of available commercial ADMET modelling software has been provided till date. 21-11-2022 © R R INSTITUTIONS , BANGALORE 5
  • 6. The human peptide transporter (hPEPT1) is a low-affinity high-capacity oligopeptide transport system that transports a diverse range of substrates including β-lactam antibiotics and angiotensin-converting enzyme (ACE) inhibitors . It is mainly expressed in intestine and kidney, affecting drug absorption and excretion. A pharmacophore model based on three high affinity substrates (Gly-Sar, bestatin, and enalapril) recognized two hydrophobic features, one hydrogen bond donor, one hydrogen bond acceptor, and one negative ionizable feature to be hPEPT1 transport requirements . 21-11-2022 © R R INSTITUTIONS , BANGALORE 6 hPEPT1
  • 7. This pharmacophore model was subsequently applied to screen the CMC database with over 8000 drug like molecules. The antidiabetic repaglinide and HMG-CoA reductase inhibitor fluvastatin were suggested by the model and later verified to inhibit hPEPT1 with submillimolar potency. This work demonstrated the potential of applying in silico models in high-throughput database screening. 21-11-2022 © R R INSTITUTIONS , BANGALORE 7
  • 8. 21-11-2022 © R R INSTITUTIONS , BANGALORE 8
  • 9. 21-11-2022 © R R INSTITUTIONS , BANGALORE 9  The human apical sodium-dependent bile acid transporter (ASBT) is a high efficacy, high-capacity transporter expressed on the apical membrane of intestinal epithelial cells and cholangiocytes.  It assists absorption of bile acids and their analogs, thus providing an additional intestinal target for improving drug absorption.  Baringhaus and colleagues developed a pharmacophore model based on a training set of 17 chemically diverse inhibitors of ASBT .  The model revealed ASBT transport requirements as one hydrogen bond donor, one hydrogen bond acceptor, one negative charge, and three hydrophobic centers.  These requirements are in good agreement with a previous 3D-QSAR model derived from the structure and activity of 30 ASBT inhibitors and substrates. ASBT
  • 10. 21-11-2022 © R R INSTITUTIONS , BANGALORE 10
  • 11. 21-11-2022 © R R INSTITUTIONS , BANGALORE 11
  • 12. The organic cation transporters (OCTs) facilitate the uptake of many cationic drugs across different barrier membranes from kidney, liver, and intestine epithelia.  A broad range of drugs or their metabolites fall into the chemical class of organic cation (carrying a net positive charge at physiological pH) including antiarrhythmics, β-adrenoreceptor blocking agents, antihistamines, antiviral agents, and skeletal muscle-relaxing agents. Three OCTs have been cloned from different species, OCT1, OCT2, and OCT3.  A human OCT1 pharmacophore model was developed by analyzing the extent of inhibition of TEA uptake in HeLa cells of 22 diverse molecules.  The model suggests the transport requirements of human OCT1 as three hydrophobic features and one positive ionizable feature . 21-11-2022 © R R INSTITUTIONS , BANGALORE 12 OCT
  • 13. Molecular determinants of substrate binding to human OCT2 and rabbit OCT2 were recently reported . Both 2D- and 3D-QSAR analyses were performed to identify and discriminate the binding requirements of the two orthologs. The models showed the same chemical features, highlighting their similarities. However, the orientation of a critical hydrogen bonding feature set the two orthologs apart. This work illustrates the sensitivity of in silico modeling in discriminating similar transporters. 21-11-2022 © R R INSTITUTIONS , BANGALORE 13
  • 14. 21-11-2022 © R R INSTITUTIONS , BANGALORE 14
  • 15. 21-11-2022 © R R INSTITUTIONS , BANGALORE 15
  • 16. 21-11-2022 © R R INSTITUTIONS , BANGALORE 16
  • 17. OATP Organic anion transporting polypeptides (OATPs) influence the plasma concentration of many drugs by actively transporting them across a diverse range of tissue membranes such as liver, intestine, lung, and brain. Because of their broad substrate specificity, OATPs transport not only organic anionic drugs, as originally thought, but also organic cationic drugs. Currently 11 human OATPs have been identified, and the substrate binding requirements of the best-studied OATP1B1 were successfully modeled with the metapharmacophore approach recently . Through assessing a training set of 18 diverse molecules, the metapharmacophore model identified three hydrophobic features flanked by two hydrogen bond acceptor features to be the essential requirement for OATP1B1 transport.  Similar requirements were derived from another 3D-QSAR study based on rat Oatp1a5 . 17
  • 18. 21-11-2022 © R R INSTITUTIONS , BANGALORE 18
  • 19. 21-11-2022 © R R INSTITUTIONS , BANGALORE 19
  • 20. The BBB-choline transporter is a native nutrient transporter that transports choline, a charged cation, across the BBB into the CNS . Its active transport assists the BBB penetration of choline like compounds, and understanding its structural requirements should afford a more accurate prediction of BBB permeation. Even though the BBB-choline transporter has not been cloned, Geldenhuys and colleagues applied a combination of empirical and theoretical methodologies to study its binding requirements . The 3DQSAR models were built with empirical Ki data obtained from in situ rat brain perfusion experiments with a structurally diverse set of compounds. 20 BBB-Choline Transporter
  • 21. Three hydrophobic interactions and one hydrogen bonding interaction surrounding the positively charged ammonium moiety were identified to be important for BBB-choline transporter recognition. Even though the model statistical significance is not optimal (q2 < 0.5), it does provide a useful estimation of BBB-choline transporter binding requirements. More accurate in silico models could be generated once higher-quality data from the cloned BBB-choline transporter are available. 21-11-2022 © R R INSTITUTIONS , BANGALORE 21
  • 22. 21-11-2022 © R R INSTITUTIONS , BANGALORE 22
  • 23. 21-11-2022 © R R INSTITUTIONS , BANGALORE 23
  • 24. • Computer Applications in Pharmaceutical Research & Development by Sean Ekins • www.slideshare.com • www.google.com • www.youtube.com 21-11-2022 © R R INSTITUTIONS , BANGALORE 24
  • 25. 21-11-2022 © R R INSTITUTIONS , BANGALORE 25