A Phylogeny of Three Sympatric Species of Lampropeltis: L. alterna, L. triangulum celaenops, and L. getula splendida (Serpentes: Colubridae) Jenny Hernandez, Miguel Quirch, and E. L. NordykeDepartment of Biology, University of St. Thomas, Houston TX, 77006
Deciphering barcode splits in morphologically cryptic species of tropical lepidopters through alternative loci and next-generation sequencing approaches.
Random amplified polymorphic DNA (RAPD) was applied to generate species-specific diagnostic fragment patterns for the molecular identification of the ornamental aquarium fish species Trichogaster lalia, more commonly known as dwarf gourami. The species were collected from various geographically distant locations of Assam. After initial screening, four primers having a length of 10 arbitary nucleotide sequence were used which generated the RAPD profile for Trichogaster species. The primers produced 39 bands in total. In the experiment 22 polymorphic bands and 7 monomorphic bands were produced. The genetic distance of an individual ranged from 0.03 to 0.38. The average genetic distance among the individuals showed that more than 0.03 species are genetically more similar
To describe DNA extraction
To explain and demonstrate DNA cloning
To explain the process of PCR and its uses.
To explain DNA fingerprinting and its uses
Deciphering barcode splits in morphologically cryptic species of tropical lepidopters through alternative loci and next-generation sequencing approaches.
Random amplified polymorphic DNA (RAPD) was applied to generate species-specific diagnostic fragment patterns for the molecular identification of the ornamental aquarium fish species Trichogaster lalia, more commonly known as dwarf gourami. The species were collected from various geographically distant locations of Assam. After initial screening, four primers having a length of 10 arbitary nucleotide sequence were used which generated the RAPD profile for Trichogaster species. The primers produced 39 bands in total. In the experiment 22 polymorphic bands and 7 monomorphic bands were produced. The genetic distance of an individual ranged from 0.03 to 0.38. The average genetic distance among the individuals showed that more than 0.03 species are genetically more similar
To describe DNA extraction
To explain and demonstrate DNA cloning
To explain the process of PCR and its uses.
To explain DNA fingerprinting and its uses
Humans have always been infected with many deadly diseases. Many of which are curable and some are non-curable. Although there has been much advancement in the medical-science, some diseases have no cure and can only be prevented. Researchers are experimenting new ways to treat or prevent these diseases. Here we have shortlisted some deadly disease that has haunted humankind.
Diversification of the genus Dolichothele (Araneae: Theraphosidae) in the Bra...WendyArroyo8
Wendy Y. Arroyo-Pérez1,2, Vera Nisaka Solferini2
1Genetics and Molecular Biology Program, University of Campinas, Brazil.
2Department of Genetics, Evolution, Microbiology and Immunology – University of Campinas, Brazil
*vera.solferini@gmail.com
*wendyarroyo2015@gmail.com
Humans have always been infected with many deadly diseases. Many of which are curable and some are non-curable. Although there has been much advancement in the medical-science, some diseases have no cure and can only be prevented. Researchers are experimenting new ways to treat or prevent these diseases. Here we have shortlisted some deadly disease that has haunted humankind.
Diversification of the genus Dolichothele (Araneae: Theraphosidae) in the Bra...WendyArroyo8
Wendy Y. Arroyo-Pérez1,2, Vera Nisaka Solferini2
1Genetics and Molecular Biology Program, University of Campinas, Brazil.
2Department of Genetics, Evolution, Microbiology and Immunology – University of Campinas, Brazil
*vera.solferini@gmail.com
*wendyarroyo2015@gmail.com
Macroeconomics- Movie Location
This will be used as part of your Personal Professional Portfolio once graded.
Objective:
Prepare a presentation or a paper using research, basic comparative analysis, data organization and application of economic information. You will make an informed assessment of an economic climate outside of the United States to accomplish an entertainment industry objective.
Safalta Digital marketing institute in Noida, provide complete applications that encompass a huge range of virtual advertising and marketing additives, which includes search engine optimization, virtual communication advertising, pay-per-click on marketing, content material advertising, internet analytics, and greater. These university courses are designed for students who possess a comprehensive understanding of virtual marketing strategies and attributes.Safalta Digital Marketing Institute in Noida is a first choice for young individuals or students who are looking to start their careers in the field of digital advertising. The institute gives specialized courses designed and certification.
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Strategies for Effective Upskilling is a presentation by Chinwendu Peace in a Your Skill Boost Masterclass organisation by the Excellence Foundation for South Sudan on 08th and 09th June 2024 from 1 PM to 3 PM on each day.
বাংলাদেশের অর্থনৈতিক সমীক্ষা ২০২৪ [Bangladesh Economic Review 2024 Bangla.pdf] কম্পিউটার , ট্যাব ও স্মার্ট ফোন ভার্সন সহ সম্পূর্ণ বাংলা ই-বুক বা pdf বই " সুচিপত্র ...বুকমার্ক মেনু 🔖 ও হাইপার লিংক মেনু 📝👆 যুক্ত ..
আমাদের সবার জন্য খুব খুব গুরুত্বপূর্ণ একটি বই ..বিসিএস, ব্যাংক, ইউনিভার্সিটি ভর্তি ও যে কোন প্রতিযোগিতা মূলক পরীক্ষার জন্য এর খুব ইম্পরট্যান্ট একটি বিষয় ...তাছাড়া বাংলাদেশের সাম্প্রতিক যে কোন ডাটা বা তথ্য এই বইতে পাবেন ...
তাই একজন নাগরিক হিসাবে এই তথ্য গুলো আপনার জানা প্রয়োজন ...।
বিসিএস ও ব্যাংক এর লিখিত পরীক্ষা ...+এছাড়া মাধ্যমিক ও উচ্চমাধ্যমিকের স্টুডেন্টদের জন্য অনেক কাজে আসবে ...
Biological screening of herbal drugs: Introduction and Need for
Phyto-Pharmacological Screening, New Strategies for evaluating
Natural Products, In vitro evaluation techniques for Antioxidants, Antimicrobial and Anticancer drugs. In vivo evaluation techniques
for Anti-inflammatory, Antiulcer, Anticancer, Wound healing, Antidiabetic, Hepatoprotective, Cardio protective, Diuretics and
Antifertility, Toxicity studies as per OECD guidelines
Exploiting Artificial Intelligence for Empowering Researchers and Faculty, In...Dr. Vinod Kumar Kanvaria
Exploiting Artificial Intelligence for Empowering Researchers and Faculty,
International FDP on Fundamentals of Research in Social Sciences
at Integral University, Lucknow, 06.06.2024
By Dr. Vinod Kumar Kanvaria
This presentation includes basic of PCOS their pathology and treatment and also Ayurveda correlation of PCOS and Ayurvedic line of treatment mentioned in classics.
MATATAG CURRICULUM: ASSESSING THE READINESS OF ELEM. PUBLIC SCHOOL TEACHERS I...NelTorrente
In this research, it concludes that while the readiness of teachers in Caloocan City to implement the MATATAG Curriculum is generally positive, targeted efforts in professional development, resource distribution, support networks, and comprehensive preparation can address the existing gaps and ensure successful curriculum implementation.
A Phylogeny of Three Sympatric Species of Lampropeltis:
1. A Phylogeny of Three Sympatric Species of Lampropeltis:
L. alterna, L. triangulum celaenops, and L. getula splendida (Serpentes:
Colubridae)
Jenny Hernandez, Miguel Quirch, and E. L. Nordyke
Department of Biology, University of St. Thomas, Houston TX, 77006
ABSTRACT:
The gray-banded kingsnake, Lampropeltis alterna, is a medium sized colubrid snake found in the Trans-Pecos/Chihuahuan Desert regions of west Texas and northern Mexico. It inhabits the dry hillsides, canyons, and mountain slopes of the
northern Chihuahuan Desert along the Rio Grande, eastward into the Edwards Plateau, and westward into the mountains of the western Trans-Pecos. The color and patterning of L. alterna is extremely variable throughout its range with
local population groups often-times separated by geographic barriers and availability of water. Gene flow between isolated population groups is thought to be minimal. The New Mexico milksnake, Lampropeltis triangulum celaenops, and
the desert kingsnake, Lampropeltis getula splendida, whose range extends across the southwestern United States, are both sympatric with L. alterna all throughout its very limited range, were selected as outgroup taxa. The phylogeny of
these species was studied using DNA sequences of the mitochondrial gene ND4. Sequences were aligned manually by eye and then analyzed using maximum parsimony and/or Bayesian inference.
INTRODUCTION:
MATERIALS AND METHODS:
Lampropeltis alterna (gray-banded kingsnake) was first discovered in the
Davis Mountains of West Texas (Brown, 1901). It is a medium sized colubrid Samples: L. alterna (031 and 032) and L. g. splendida (111) were collected from Val
snake inhabiting the Trans-Pecos/Chihuahuan Desert regions of West Texas and Verde Co - Langtry. L. t. celaenops (101) was collected from Brewster Co – Black
Northern Mexico. L. alterna inhabits the dry hillsides, canyons, and mountain Gap. Shed skins were taken from these snakes.
slopes of the northern Chihuahuan Desert along the Rio Grande, eastward into
the Edwards Plateau, and westward into the mountains of the western Trans- DNA Isolation: Total genomic DNA was extracted from shed skin using a
Pecos. Although the potential habitat is much larger, L. alterna are currently commercially available Kit (Invitrogen) and the protocol for isolation of DNA from
Fig. 3. L. alterna, Western form,
found in 15 counties in Texas (Brewster, Crane, Crocket, Culberson, Edwards, El Fig. 1. .L. alterna, Eastern form, Fig. 2. L. alterna, Eastern form,
Jeff Davis Co, McDonald Observat. mouse tails. About 10 micrograms of DNA could be extracted from about 20
Val Verde Co, Juno Rd “blairi” Val Verde Co, Juno Rd “alterna”
Paso, Hudspeth, Jeff Davis, Kinney, Pecos, Presidio, Sutton, Terrell, Upton, and milligrams of skin
Val Verde), Eddy County in New Mexico, and in the Mexican states of Coahuila,
Durango, and Nuevo Leon. Area-wise, this is a small range when compared to Polymerase Chain Reaction (PCR): Using PCR and total cellular DNA as a
the range of most colubrid snakes. template, a fragment of mtDNA was amplified. The fragment encompassed a
portion of the 3’ end of the nicotinamide adenine dinucleotide dehydrogenase
The color and patterning of L. alterna is extremely variable throughout its subunit 4 and section of three transfer ribonucleic acid (tRNA) genes (tRNA His,
range. There is great variation within populations and there are characteristic tRNASer, tRNALeu). Primers used were synthesize by Synthegen and labeled ND4
differences between populations (Miller, 1979). Over their range in West Texas, and Lew (Arevalo et al, 1994). PCR reactions were carried out in 100 microL
small habitat isolated populations are often separated by geographic and volumes consisting of 2 microL of template DNA, 5 microL of primers (1 microM),
environmental barriers with gene flow between isolated groups considered to be Fig. 4. L. alterna, Intergrade Fig. 5. L. alterna, Intergrade Fig. 6. L. alterna, Intergrade, and PCR solution readily mixed with the deoxynucleotide triphosphates, Thermus
minimal (Tenant, 1998). Brewster Co., Black Gap Brewster Co., Black Gap Brewster Co., Black Gap aquaticus DNA polymerase, and H2O available as Supermix® by Invitrogen. DNA
Two distinct color morphs were described by Tanzer, 1970. L. alterna with was denatured initially at 94°C for 5 min, then 35 cycles of amplification were
wide red bands were called “blairi” morphs, and those with little or no red bands carried out under the following conditions: 94°C denaturation for 60 sec, 55°C
and the presence of some alternating bands as “alterna.” Background color in annealing for 60 sec, and 72°C for 60 sec, followed by a final 5 min extension at
both morphs range from black to light gray. Miller, 1979, described >90% of 72°C. Two microL of the resulting PCR product was electrophoresed on a 1%
Eastern form L. alterna as having <16 wide, solid bands, and <6 alternate broken agarose gel and stained with ethidium bromide. Lone Star Labs, Houston, Texas,
bands (often none). Most of the Eastern form are “blairi” morphs (see Fig. 1). 77054, using an automated sequencer, directly sequenced the PCR product.
They are also more numerous, possibly due to the greater availability of water, Additional sequence data were obtained from GenBank, combined with collected
with watersheds such as the Rio Grande and Devil’s rivers. <10% of Eastern sequence data, and the sequences were aligned by CLUSTAL W on SDSC Biology
Fig. 7.L. alterna, Intergrade, Fig. 8. L. alterna. Intergrade,
form are “alterna” morphs (see Fig. 2). Miller also described >90% of Western Brewster Co., Black Gap Brewster Co., Black Gap Workbench.
form L. alterna as having >16 narrow, solid bands, >6 alternate broken bands,
and speckling on the body, usually around the head and neck. Though Western
form are highly variable, most are recognized as “alterna” morphs (see Fig. RESULTS AND DISCUSSION:
3,4,5). The Western form inhabits a dryer region (Chihuahua Desert) and are far
fewer in number. An area of intergradation between the two forms runs through A Rooted tree generated by Phylip’s Drawgram showed three clusters:
southeastern Brewster County north. Though both “blairi” and “alterna” 1. L. t. celaenops AY739630, AY739631, and 101 were closely related.
morphs are found here, typically one finds extreme variation in the color,
patterning, and background color (see Fig. 6,7,8). 2. L. alterna AY739636 (Val Verde Co.), 032 (Val Verde Co.) and AY497307
Fig. 9. Lampropeltis triangulum
(Crockett Co.) were closely related. These 3 snakes are all Eastern form
Fig. 10. Lampropeltis getula
Lampropeltis triangulum celaenops (New Mexico milksnake), is one of two celaenops, Brewster Co., Black Gap splendida, Val Verde Co. alterna.
Lampropeltis species that is sympatric (shares the same range) with L. alterna.
Fig. 9 shows a typical celaenops with its triads of red, black, and white. Unlike 3. L. alterna AY739634 (Jeff Davis Co.), AY739635 (Jeff Davis Co.), and
alterna with its extreme variation, the color and patterning of celaenops is stable AY739633 (Mexico, Nuevo Leon) were closely related. These 3 snakes are the 2
throughout the range it shares with alterna. Western form and the alterna from Mexico.
REFERENCES:
Lampropeltis getula splendida (desert kingsnake) is also sympatric with L. Arevalo E, Davis SK, Sites JW Jr (1994) Mitochondrial DNA sequence divergence and phylogenetic
Current taxonomy considers L. alterna distinct from L. t. celaenops based on
alterna. L. g. splendida is dark brown or black with yellow-centered scales located relationships among eight chromosome races of the Sceloporous grammicus complex (Phrynosomatide) in morphological differences (Gartska, 1982). However, a recent paper (Bryson
predominantly on the sides of the body and those on the middle of the back form central Mexico. Systemic Biology, 43, 387-418. Jr, 2007), using the sequence of the mitochondrial ND4 enzyme subunit gene,
regularly spaced narrow crosslines (see Fig. 10). L. alterna and L. t. celaenops Brown AE (1901) A new species of Ophibolus from western Texas. Proc. Nat Acad. Sci., 55, 543-558. places both L. alterna and L. t. celaenops together in a “northern clade”.
share similar hemipenal and vertebral structures that are unlike L. g. splendida Further research using nuclear markers to assess gene flow among these
Bryson RW Jr, Pastorini J, Burbrink FT, Forstner MRJ (2007) A phylogeny of the Lampropeltis mexicana
(Gartska, 1982). complex (Serpentes: Colubridae) based on mitochondrial DNA sequences suggests evidence for species- groups will be necessary to determine if the currently recognized taxa do
level polyphyly within Lampropeltis. Mol. Phylogen. and Evol., 43, 674-684. represent species and if the mtDNA data are indeed in error.
The purpose of this study is to use mitochondrial DNA sequences to assess
Gartska WR (1982) Systematics of the mexicana complex species group of the colubrid genus
the phylogenetic relationship between L. alterna and L. t. celaenops. Lampropeltis, with an hypothesis mimicry. Brevoria, 466, 1-35.
Miller D (1979) A life history study of the Gray-Banded kingsnake, Lampropeltis mexicana alterna in
Texas. Chihuahuan Desert Res. Inst. Contrib., 87, 1-48.
Tanzer EC (1970) Polymorphism in the mexicana complex of Kingsnakes, with notes on their natural
history. Herpetologica, 26, 419-428.
Tenant A (1998) The snakes of Texas. Texas Monthly Press, Austin.