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A Phylogeny of  Three Sympatric Species of Lampropeltis:
                                      L. alterna, L. triangulum celaenops, and L. getula splendida (Serpentes:
                                                                     Colubridae) 

                                                                         Jenny Hernandez, Miguel Quirch, and E. L. Nordyke
                                                               Department of Biology, University of St. Thomas, Houston TX, 77006

 ABSTRACT:
 The gray-banded kingsnake, Lampropeltis alterna, is a medium sized colubrid snake found in the Trans-Pecos/Chihuahuan Desert regions of west Texas and northern Mexico. It inhabits the dry hillsides, canyons, and mountain slopes of the
 northern Chihuahuan Desert along the Rio Grande, eastward into the Edwards Plateau, and westward into the mountains of the western Trans-Pecos. The color and patterning of L. alterna is extremely variable throughout its range with
 local population groups often-times separated by geographic barriers and availability of water. Gene flow between isolated population groups is thought to be minimal. The New Mexico milksnake, Lampropeltis triangulum celaenops, and
 the desert kingsnake, Lampropeltis getula splendida, whose range extends across the southwestern United States, are both sympatric with L. alterna all throughout its very limited range, were selected as outgroup taxa. The phylogeny of
 these species was studied using DNA sequences of the mitochondrial gene ND4. Sequences were aligned manually by eye and then analyzed using maximum parsimony and/or Bayesian inference.


INTRODUCTION:
                                                                                                                                                                                                                         MATERIALS AND METHODS:
      Lampropeltis alterna (gray-banded kingsnake) was first discovered in the
Davis Mountains of West Texas (Brown, 1901). It is a medium sized colubrid                                                                                                                                               Samples: L. alterna (031 and 032) and L. g. splendida (111) were collected from Val
snake inhabiting the Trans-Pecos/Chihuahuan Desert regions of West Texas and                                                                                                                                             Verde Co - Langtry. L. t. celaenops (101) was collected from Brewster Co – Black
Northern Mexico. L. alterna inhabits the dry hillsides, canyons, and mountain                                                                                                                                            Gap. Shed skins were taken from these snakes.
slopes of the northern Chihuahuan Desert along the Rio Grande, eastward into
the Edwards Plateau, and westward into the mountains of the western Trans-                                                                                                                                               DNA Isolation: Total genomic DNA was extracted from shed skin using a
Pecos. Although the potential habitat is much larger, L. alterna are currently                                                                                                                                           commercially available Kit (Invitrogen) and the protocol for isolation of DNA from
                                                                                                                                                                                     Fig. 3. L. alterna, Western form,
found in 15 counties in Texas (Brewster, Crane, Crocket, Culberson, Edwards, El       Fig. 1. .L. alterna, Eastern form,            Fig. 2. L. alterna, Eastern form,
                                                                                                                                                                                     Jeff Davis Co, McDonald Observat.   mouse tails. About 10 micrograms of DNA could be extracted from about 20
                                                                                      Val Verde Co, Juno Rd “blairi”                Val Verde Co, Juno Rd “alterna”
Paso, Hudspeth, Jeff Davis, Kinney, Pecos, Presidio, Sutton, Terrell, Upton, and                                                                                                                                         milligrams of skin
Val Verde), Eddy County in New Mexico, and in the Mexican states of Coahuila,
Durango, and Nuevo Leon. Area-wise, this is a small range when compared to                                                                                                                                                Polymerase Chain Reaction (PCR): Using PCR and total cellular DNA as a
the range of most colubrid snakes.                                                                                                                                                                                        template, a fragment of mtDNA was amplified. The fragment encompassed a
                                                                                                                                                                                                                          portion of the 3’ end of the nicotinamide adenine dinucleotide dehydrogenase
       The color and patterning of L. alterna is extremely variable throughout its                                                                                                                                        subunit 4 and section of three transfer ribonucleic acid (tRNA) genes (tRNA His,
range. There is great variation within populations and there are characteristic                                                                                                                                           tRNASer, tRNALeu). Primers used were synthesize by Synthegen and labeled ND4
differences between populations (Miller, 1979). Over their range in West Texas,                                                                                                                                           and Lew (Arevalo et al, 1994). PCR reactions were carried out in 100 microL
small habitat isolated populations are often separated by geographic and                                                                                                                                                  volumes consisting of 2 microL of template DNA, 5 microL of primers (1 microM),
environmental barriers with gene flow between isolated groups considered to be          Fig. 4. L. alterna, Intergrade               Fig. 5. L. alterna, Intergrade                  Fig. 6. L. alterna, Intergrade,      and PCR solution readily mixed with the deoxynucleotide triphosphates, Thermus
minimal (Tenant, 1998).                                                                 Brewster Co., Black Gap                      Brewster Co., Black Gap                         Brewster Co., Black Gap              aquaticus DNA polymerase, and H2O available as Supermix® by Invitrogen. DNA
      Two distinct color morphs were described by Tanzer, 1970. L. alterna with                                                                                                                                           was denatured initially at 94°C for 5 min, then 35 cycles of amplification were
wide red bands were called “blairi” morphs, and those with little or no red bands                                                                                                                                         carried out under the following conditions: 94°C denaturation for 60 sec, 55°C
and the presence of some alternating bands as “alterna.” Background color in                                                                                                                                              annealing for 60 sec, and 72°C for 60 sec, followed by a final 5 min extension at
both morphs range from black to light gray. Miller, 1979, described >90% of                                                                                                                                               72°C. Two microL of the resulting PCR product was electrophoresed on a 1%
Eastern form L. alterna as having <16 wide, solid bands, and <6 alternate broken                                                                                                                                          agarose gel and stained with ethidium bromide. Lone Star Labs, Houston, Texas,
bands (often none). Most of the Eastern form are “blairi” morphs (see Fig. 1).                                                                                                                                            77054, using an automated sequencer, directly sequenced the PCR product.
They are also more numerous, possibly due to the greater availability of water,                                                                                                                                          Additional sequence data were obtained from GenBank, combined with collected
with watersheds such as the Rio Grande and Devil’s rivers. <10% of Eastern                                                                                                                                               sequence data, and the sequences were aligned by CLUSTAL W on SDSC Biology
                                                                                                   Fig. 7.L. alterna, Intergrade,                           Fig. 8. L. alterna. Intergrade,
form are “alterna” morphs (see Fig. 2). Miller also described >90% of Western                      Brewster Co., Black Gap                                  Brewster Co., Black Gap                                      Workbench.
form L. alterna as having >16 narrow, solid bands, >6 alternate broken bands,
and speckling on the body, usually around the head and neck. Though Western
form are highly variable, most are recognized as “alterna” morphs (see Fig.                                                                                                                                              RESULTS AND DISCUSSION:
3,4,5). The Western form inhabits a dryer region (Chihuahua Desert) and are far
fewer in number. An area of intergradation between the two forms runs through                                                                                                                                            A Rooted tree generated by Phylip’s Drawgram showed three clusters:
southeastern Brewster County north. Though both “blairi” and “alterna”                                                                                                                                                   1. L. t. celaenops AY739630, AY739631, and 101 were closely related.
morphs are found here, typically one finds extreme variation in the color,
patterning, and background color (see Fig. 6,7,8).                                                                                                                                                                       2. L. alterna AY739636 (Val Verde Co.), 032 (Val Verde Co.) and AY497307
                                                                                                   Fig. 9. Lampropeltis triangulum
                                                                                                                                                                                                                            (Crockett Co.) were closely related. These 3 snakes are all Eastern form
                                                                                                                                                            Fig. 10. Lampropeltis getula
        Lampropeltis triangulum celaenops (New Mexico milksnake), is one of two                    celaenops, Brewster Co., Black Gap                       splendida, Val Verde Co.                                        alterna.
Lampropeltis species that is sympatric (shares the same range) with L. alterna.
Fig. 9 shows a typical celaenops with its triads of red, black, and white. Unlike                                                                                                                                        3. L. alterna AY739634 (Jeff Davis Co.), AY739635 (Jeff Davis Co.), and
alterna with its extreme variation, the color and patterning of celaenops is stable                                                                                                                                         AY739633 (Mexico, Nuevo Leon) were closely related. These 3 snakes are the 2
throughout the range it shares with alterna.                                                                                                                                                                                Western form and the alterna from Mexico.
                                                                                                 REFERENCES:
        Lampropeltis getula splendida (desert kingsnake) is also sympatric with L.               Arevalo E, Davis SK, Sites JW Jr (1994) Mitochondrial DNA sequence divergence and phylogenetic
                                                                                                                                                                                                      Current taxonomy considers L. alterna distinct from L. t. celaenops based on
alterna. L. g. splendida is dark brown or black with yellow-centered scales located              relationships among eight chromosome races of the Sceloporous grammicus complex (Phrynosomatide) in    morphological differences (Gartska, 1982). However, a recent paper (Bryson
predominantly on the sides of the body and those on the middle of the back form                  central Mexico. Systemic Biology, 43, 387-418.                                                         Jr, 2007), using the sequence of the mitochondrial ND4 enzyme subunit gene,
regularly spaced narrow crosslines (see Fig. 10). L. alterna and L. t. celaenops                 Brown AE (1901) A new species of Ophibolus from western Texas. Proc. Nat Acad. Sci., 55, 543-558.      places both L. alterna and L. t. celaenops together in a “northern clade”.
share similar hemipenal and vertebral structures that are unlike L. g. splendida                                                                                                                        Further research using nuclear markers to assess gene flow among these
                                                                                                 Bryson RW Jr, Pastorini J, Burbrink FT, Forstner MRJ (2007) A phylogeny of the Lampropeltis mexicana
(Gartska, 1982).                                                                                 complex (Serpentes: Colubridae) based on mitochondrial DNA sequences suggests evidence for species-    groups will be necessary to determine if the currently recognized taxa do
                                                                                                 level polyphyly within Lampropeltis. Mol. Phylogen. and Evol., 43, 674-684.                            represent species and if the mtDNA data are indeed in error.
      The purpose of this study is to use mitochondrial DNA sequences to assess
                                                                                                 Gartska WR (1982) Systematics of the mexicana complex species group of the colubrid genus
the phylogenetic relationship between L. alterna and L. t. celaenops.                            Lampropeltis, with an hypothesis mimicry. Brevoria, 466, 1-35.
                                                                                                 Miller D (1979) A life history study of the Gray-Banded kingsnake, Lampropeltis mexicana alterna in
                                                                                                 Texas. Chihuahuan Desert Res. Inst. Contrib., 87, 1-48.
                                                                                                  Tanzer EC (1970) Polymorphism in the mexicana complex of Kingsnakes, with notes on their natural
                                                                                                 history. Herpetologica, 26, 419-428.
                                                                                                 Tenant A (1998) The snakes of Texas. Texas Monthly Press, Austin.

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A Phylogeny of  Three Sympatric Species of Lampropeltis:

  • 1. A Phylogeny of  Three Sympatric Species of Lampropeltis:  L. alterna, L. triangulum celaenops, and L. getula splendida (Serpentes: Colubridae)  Jenny Hernandez, Miguel Quirch, and E. L. Nordyke Department of Biology, University of St. Thomas, Houston TX, 77006 ABSTRACT: The gray-banded kingsnake, Lampropeltis alterna, is a medium sized colubrid snake found in the Trans-Pecos/Chihuahuan Desert regions of west Texas and northern Mexico. It inhabits the dry hillsides, canyons, and mountain slopes of the northern Chihuahuan Desert along the Rio Grande, eastward into the Edwards Plateau, and westward into the mountains of the western Trans-Pecos. The color and patterning of L. alterna is extremely variable throughout its range with local population groups often-times separated by geographic barriers and availability of water. Gene flow between isolated population groups is thought to be minimal. The New Mexico milksnake, Lampropeltis triangulum celaenops, and the desert kingsnake, Lampropeltis getula splendida, whose range extends across the southwestern United States, are both sympatric with L. alterna all throughout its very limited range, were selected as outgroup taxa. The phylogeny of these species was studied using DNA sequences of the mitochondrial gene ND4. Sequences were aligned manually by eye and then analyzed using maximum parsimony and/or Bayesian inference. INTRODUCTION: MATERIALS AND METHODS: Lampropeltis alterna (gray-banded kingsnake) was first discovered in the Davis Mountains of West Texas (Brown, 1901). It is a medium sized colubrid Samples: L. alterna (031 and 032) and L. g. splendida (111) were collected from Val snake inhabiting the Trans-Pecos/Chihuahuan Desert regions of West Texas and Verde Co - Langtry. L. t. celaenops (101) was collected from Brewster Co – Black Northern Mexico. L. alterna inhabits the dry hillsides, canyons, and mountain Gap. Shed skins were taken from these snakes. slopes of the northern Chihuahuan Desert along the Rio Grande, eastward into the Edwards Plateau, and westward into the mountains of the western Trans- DNA Isolation: Total genomic DNA was extracted from shed skin using a Pecos. Although the potential habitat is much larger, L. alterna are currently commercially available Kit (Invitrogen) and the protocol for isolation of DNA from Fig. 3. L. alterna, Western form, found in 15 counties in Texas (Brewster, Crane, Crocket, Culberson, Edwards, El Fig. 1. .L. alterna, Eastern form, Fig. 2. L. alterna, Eastern form, Jeff Davis Co, McDonald Observat. mouse tails. About 10 micrograms of DNA could be extracted from about 20 Val Verde Co, Juno Rd “blairi” Val Verde Co, Juno Rd “alterna” Paso, Hudspeth, Jeff Davis, Kinney, Pecos, Presidio, Sutton, Terrell, Upton, and milligrams of skin Val Verde), Eddy County in New Mexico, and in the Mexican states of Coahuila, Durango, and Nuevo Leon. Area-wise, this is a small range when compared to Polymerase Chain Reaction (PCR): Using PCR and total cellular DNA as a the range of most colubrid snakes. template, a fragment of mtDNA was amplified. The fragment encompassed a portion of the 3’ end of the nicotinamide adenine dinucleotide dehydrogenase The color and patterning of L. alterna is extremely variable throughout its subunit 4 and section of three transfer ribonucleic acid (tRNA) genes (tRNA His, range. There is great variation within populations and there are characteristic tRNASer, tRNALeu). Primers used were synthesize by Synthegen and labeled ND4 differences between populations (Miller, 1979). Over their range in West Texas, and Lew (Arevalo et al, 1994). PCR reactions were carried out in 100 microL small habitat isolated populations are often separated by geographic and  volumes consisting of 2 microL of template DNA, 5 microL of primers (1 microM), environmental barriers with gene flow between isolated groups considered to be Fig. 4. L. alterna, Intergrade Fig. 5. L. alterna, Intergrade Fig. 6. L. alterna, Intergrade, and PCR solution readily mixed with the deoxynucleotide triphosphates, Thermus minimal (Tenant, 1998). Brewster Co., Black Gap Brewster Co., Black Gap Brewster Co., Black Gap aquaticus DNA polymerase, and H2O available as Supermix® by Invitrogen. DNA Two distinct color morphs were described by Tanzer, 1970. L. alterna with was denatured initially at 94°C for 5 min, then 35 cycles of amplification were wide red bands were called “blairi” morphs, and those with little or no red bands carried out under the following conditions: 94°C denaturation for 60 sec, 55°C and the presence of some alternating bands as “alterna.” Background color in annealing for 60 sec, and 72°C for 60 sec, followed by a final 5 min extension at both morphs range from black to light gray. Miller, 1979, described >90% of 72°C. Two microL of the resulting PCR product was electrophoresed on a 1% Eastern form L. alterna as having <16 wide, solid bands, and <6 alternate broken agarose gel and stained with ethidium bromide. Lone Star Labs, Houston, Texas, bands (often none). Most of the Eastern form are “blairi” morphs (see Fig. 1). 77054, using an automated sequencer, directly sequenced the PCR product. They are also more numerous, possibly due to the greater availability of water, Additional sequence data were obtained from GenBank, combined with collected with watersheds such as the Rio Grande and Devil’s rivers. <10% of Eastern sequence data, and the sequences were aligned by CLUSTAL W on SDSC Biology Fig. 7.L. alterna, Intergrade, Fig. 8. L. alterna. Intergrade, form are “alterna” morphs (see Fig. 2). Miller also described >90% of Western Brewster Co., Black Gap Brewster Co., Black Gap Workbench. form L. alterna as having >16 narrow, solid bands, >6 alternate broken bands, and speckling on the body, usually around the head and neck. Though Western form are highly variable, most are recognized as “alterna” morphs (see Fig. RESULTS AND DISCUSSION: 3,4,5). The Western form inhabits a dryer region (Chihuahua Desert) and are far fewer in number. An area of intergradation between the two forms runs through A Rooted tree generated by Phylip’s Drawgram showed three clusters: southeastern Brewster County north. Though both “blairi” and “alterna” 1. L. t. celaenops AY739630, AY739631, and 101 were closely related. morphs are found here, typically one finds extreme variation in the color, patterning, and background color (see Fig. 6,7,8). 2. L. alterna AY739636 (Val Verde Co.), 032 (Val Verde Co.) and AY497307 Fig. 9. Lampropeltis triangulum (Crockett Co.) were closely related. These 3 snakes are all Eastern form Fig. 10. Lampropeltis getula Lampropeltis triangulum celaenops (New Mexico milksnake), is one of two celaenops, Brewster Co., Black Gap splendida, Val Verde Co. alterna. Lampropeltis species that is sympatric (shares the same range) with L. alterna. Fig. 9 shows a typical celaenops with its triads of red, black, and white. Unlike 3. L. alterna AY739634 (Jeff Davis Co.), AY739635 (Jeff Davis Co.), and alterna with its extreme variation, the color and patterning of celaenops is stable AY739633 (Mexico, Nuevo Leon) were closely related. These 3 snakes are the 2 throughout the range it shares with alterna. Western form and the alterna from Mexico. REFERENCES: Lampropeltis getula splendida (desert kingsnake) is also sympatric with L. Arevalo E, Davis SK, Sites JW Jr (1994) Mitochondrial DNA sequence divergence and phylogenetic Current taxonomy considers L. alterna distinct from L. t. celaenops based on alterna. L. g. splendida is dark brown or black with yellow-centered scales located relationships among eight chromosome races of the Sceloporous grammicus complex (Phrynosomatide) in morphological differences (Gartska, 1982). However, a recent paper (Bryson predominantly on the sides of the body and those on the middle of the back form central Mexico. Systemic Biology, 43, 387-418. Jr, 2007), using the sequence of the mitochondrial ND4 enzyme subunit gene, regularly spaced narrow crosslines (see Fig. 10). L. alterna and L. t. celaenops Brown AE (1901) A new species of Ophibolus from western Texas. Proc. Nat Acad. Sci., 55, 543-558. places both L. alterna and L. t. celaenops together in a “northern clade”. share similar hemipenal and vertebral structures that are unlike L. g. splendida Further research using nuclear markers to assess gene flow among these Bryson RW Jr, Pastorini J, Burbrink FT, Forstner MRJ (2007) A phylogeny of the Lampropeltis mexicana (Gartska, 1982). complex (Serpentes: Colubridae) based on mitochondrial DNA sequences suggests evidence for species- groups will be necessary to determine if the currently recognized taxa do level polyphyly within Lampropeltis. Mol. Phylogen. and Evol., 43, 674-684. represent species and if the mtDNA data are indeed in error. The purpose of this study is to use mitochondrial DNA sequences to assess Gartska WR (1982) Systematics of the mexicana complex species group of the colubrid genus the phylogenetic relationship between L. alterna and L. t. celaenops. Lampropeltis, with an hypothesis mimicry. Brevoria, 466, 1-35. Miller D (1979) A life history study of the Gray-Banded kingsnake, Lampropeltis mexicana alterna in Texas. Chihuahuan Desert Res. Inst. Contrib., 87, 1-48. Tanzer EC (1970) Polymorphism in the mexicana complex of Kingsnakes, with notes on their natural history. Herpetologica, 26, 419-428. Tenant A (1998) The snakes of Texas. Texas Monthly Press, Austin.