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© 2021 Samsung SDSA
A Highly Data-Efficient Deep
Learning Approach
Patrick Bangert, VP of AI
Samsung SDSA
© 2021 Samsung SDSA
COVID-19: When arriving at the hospital, a patient with symptoms
wants to know quickly whether they have COVID-19 or not.
Diagnosis Options
• Diagnosing COVID-19 usually requires a nasal
swab and a laboratory analysis that takes time
• Rapid test kits are ~90% accurate and often
not available1
• Normal test kits are ~94% accurate but take
1-2 days in the laboratory2
• Lung X-rays are quick, easy, and cheap
• COVID-19 must be reliably distinguished from
other respiratory diseases, like pneumonia.
• Can this be done from X-rays using AI?
2
© 2021 Samsung SDSA
Dataset for Training AI: Machine learning must learn from a dataset.
CloudFactory provides an open-source dataset of 15254 labeled x-ray
images.
Big Data <> Small Data
• Obtaining medical images is difficult due to
privacy laws (HIPAA) and acquisition costs
• Labeling medical images and locating the
disease is time-consuming and requires
expert medical professionals
• AI requires as many labeled examples as
possible to improve accuracy
• We desire to make a good model from a
small dataset
• Active learning learns as the labeling happens
and provides feedback when it is ok to stop
3
© 2021 Samsung SDSA
Pre-Processing the Data: The dataset is imbalanced and images are
not registered.
Images must be made comparable
• The few COVID images must be oversampled so
that the number of COVID cases is comparable to
the number of pneumonia cases.
• Normal and pneumonia cases were
undersampled
• COVID cases were oversampled randomly
without modification (no added noise)
• Images must be registered
• Analysis is relevant for lungs only
• Other image parts must be removed
4
0
2000
4000
6000
8000
10000
Normal Pneumonia Covid
Patients count
0
2000
4000
6000
8000
10000
Normal Pneumonia Covid
Number of images train test
© 2021 Samsung SDSA
Feature Engineering: Image resolution is high and the number of
images is low, so we must extract informative features to be able to
classify them accurately.
Features are generated automatically
• Parts of images are recognized as “features” of the
larger image
• Relation of “being a part of” becomes a metric in the
space of images
• This process sorts and clusters a set of random images
into groups, or features, in a high-dimensional space
• The technique is called SimCLR1 and provides higher
accuracy than state-of-the-art for computer vision
classification
• Beyond SimCLR, a single fully connected NN layer
converts the vector representation into a class label
5
1 https://arxiv.org/abs/2002.05709
https://papers.nips.cc/paper/2020/hash/fcbc95ccdd551da181207c0c1400c655-Abstract.html
© 2021 Samsung SDSA
Active Learning: Labeling medical images is difficult – we want to label
the minimum number of images necessary.
Order matters in labeling!
• Some images add a lot of information, some add only
little information
• Active Learning sorts the images in order of
the probability estimate of the classifier
• Human experts then label only those images that add
significant information
• During the labeling process, the model is continuously
re-trained
• Accuracy rises as shown in red, as opposed to a random
order as shown in blue
• After only 16% of images are labeled, the model
achieves maximum accuracy (in this case)
6
% labeled images
accuracy
16%
© 2021 Samsung SDSA
The Need for Speed – in AI Training: In active learning, the model
must be updated quickly for the model to keep up with the human
labeling process.
Distributed Training
• Using multiple GPUs can reduce the computation
time for AI training linearly
• Organizationally, teams might label each morning
and afternoon, doing a retraining during lunch
and dinner.
• Linear scaling has been proved in computer
vision and natural-language processing tasks
• Allows active learning to take place in near real-
time speeds
• Using 8 GPUs, active learning can be run over a
lunch break,
• Using 64 GPUs, it can be run in 8 minutes.
7
© 2021 Samsung SDSA
High Accuracy: In detecting COVID-19, accuracy matters as this will
determine medical treatment and the success of this treatment.
Accuracy increases with labels
• State of the art for this dataset is an accuracy of
91%
• Our method can match this accuracy with only
16% labeled data
• Going to a fully labeled dataset brings our model
to an accuracy of 95% (on test data) as compared
to 91% with state of the art.
• This accuracy is higher than the nasal swab test
that lies at 94%
8
60%
70%
80%
90%
100%
1% Labels 10% Labels 20% Labels 100% Labels
Test data
All data
COVID-only data
Baseline accuracy 91%
© 2021 Samsung SDSA
Confusion Matrices reveal the Benefits
9
Normal Pneumonia COVID-19
Normal 95% 5% 0%
Pneumonia 5% 94% 1%
COVID-19 5% 4% 91%
Baseline
Ground
Truth
Predicted
Normal Pneumonia COVID-19
Normal 95% 5% 0%
Pneumonia 7% 92% 1%
COVID-19 3% 2% 95%
Our model
Predicted
The confusion matrix over the test data shows what the model returns for each true category. Our model is
less confused about COVID than the state-of-the-art model by 4%.
© 2021 Samsung SDSA
Conclusion: Combining pre-processing, feature engineering,
distributed training, and active learning leads to the most accurate
COVID-19 detection method to date.
Organic Problems need Holistic Solutions
• COVID-19 can be diagnosed accurately on the
basis of a lung x-ray.
• State of the art accuracy can be achieved by
labeling only 16% of the images – saving 84% of
the manual effort.
• Using all labeled images (manual and automatic)
increases the accuracy to 95%.
• This methodology relies on multiple techniques
of pre-processing and automated feature
engineering as well as distributed training to
work in realistic time-scale
• Result: COVID-19 diagnosis more accurate than a
nasal swab!
10
Understand
Data
Prepare
Data
Model
Evaluate
Deploy
Monitor
Model Lifecycle
Governance
© 2021 Samsung SDSA
Resources
Further Information
• Scientific paper:
https://arxiv.org/abs/2103.05109
• Two-part popular article
• https://www.linkedin.com/pulse/artificial-
intelligence-covid-19-screening-covid-using-
bangert/
• https://www.linkedin.com/pulse/teach-
computer-vision-training-covid-scans-part-2-
patrick-bangert/
• Demo video of the technology:
https://youtu.be/wcP1fRPKXSU
11
Datasets used
• https://github.com/agchung/Actualmed-COVID-
chestxray-dataset
• https://github.com/agchung/Figure1-COVID-
chestxray-dataset
• https://www.kaggle.com/c/rsna-pneumonia-
detection-challenge/data
• https://www.kaggle.com/tawsifurrahman/covid1
9-radiography-database
• https://arxiv.org/pdf/2003.11597.pdf
Thank you.
Patrick Bangert
p.bangert@samsung.com

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“A Highly Data-Efficient Deep Learning Approach,” a Presentation from Samsung

  • 1. © 2021 Samsung SDSA A Highly Data-Efficient Deep Learning Approach Patrick Bangert, VP of AI Samsung SDSA
  • 2. © 2021 Samsung SDSA COVID-19: When arriving at the hospital, a patient with symptoms wants to know quickly whether they have COVID-19 or not. Diagnosis Options • Diagnosing COVID-19 usually requires a nasal swab and a laboratory analysis that takes time • Rapid test kits are ~90% accurate and often not available1 • Normal test kits are ~94% accurate but take 1-2 days in the laboratory2 • Lung X-rays are quick, easy, and cheap • COVID-19 must be reliably distinguished from other respiratory diseases, like pneumonia. • Can this be done from X-rays using AI? 2
  • 3. © 2021 Samsung SDSA Dataset for Training AI: Machine learning must learn from a dataset. CloudFactory provides an open-source dataset of 15254 labeled x-ray images. Big Data <> Small Data • Obtaining medical images is difficult due to privacy laws (HIPAA) and acquisition costs • Labeling medical images and locating the disease is time-consuming and requires expert medical professionals • AI requires as many labeled examples as possible to improve accuracy • We desire to make a good model from a small dataset • Active learning learns as the labeling happens and provides feedback when it is ok to stop 3
  • 4. © 2021 Samsung SDSA Pre-Processing the Data: The dataset is imbalanced and images are not registered. Images must be made comparable • The few COVID images must be oversampled so that the number of COVID cases is comparable to the number of pneumonia cases. • Normal and pneumonia cases were undersampled • COVID cases were oversampled randomly without modification (no added noise) • Images must be registered • Analysis is relevant for lungs only • Other image parts must be removed 4 0 2000 4000 6000 8000 10000 Normal Pneumonia Covid Patients count 0 2000 4000 6000 8000 10000 Normal Pneumonia Covid Number of images train test
  • 5. © 2021 Samsung SDSA Feature Engineering: Image resolution is high and the number of images is low, so we must extract informative features to be able to classify them accurately. Features are generated automatically • Parts of images are recognized as “features” of the larger image • Relation of “being a part of” becomes a metric in the space of images • This process sorts and clusters a set of random images into groups, or features, in a high-dimensional space • The technique is called SimCLR1 and provides higher accuracy than state-of-the-art for computer vision classification • Beyond SimCLR, a single fully connected NN layer converts the vector representation into a class label 5 1 https://arxiv.org/abs/2002.05709 https://papers.nips.cc/paper/2020/hash/fcbc95ccdd551da181207c0c1400c655-Abstract.html
  • 6. © 2021 Samsung SDSA Active Learning: Labeling medical images is difficult – we want to label the minimum number of images necessary. Order matters in labeling! • Some images add a lot of information, some add only little information • Active Learning sorts the images in order of the probability estimate of the classifier • Human experts then label only those images that add significant information • During the labeling process, the model is continuously re-trained • Accuracy rises as shown in red, as opposed to a random order as shown in blue • After only 16% of images are labeled, the model achieves maximum accuracy (in this case) 6 % labeled images accuracy 16%
  • 7. © 2021 Samsung SDSA The Need for Speed – in AI Training: In active learning, the model must be updated quickly for the model to keep up with the human labeling process. Distributed Training • Using multiple GPUs can reduce the computation time for AI training linearly • Organizationally, teams might label each morning and afternoon, doing a retraining during lunch and dinner. • Linear scaling has been proved in computer vision and natural-language processing tasks • Allows active learning to take place in near real- time speeds • Using 8 GPUs, active learning can be run over a lunch break, • Using 64 GPUs, it can be run in 8 minutes. 7
  • 8. © 2021 Samsung SDSA High Accuracy: In detecting COVID-19, accuracy matters as this will determine medical treatment and the success of this treatment. Accuracy increases with labels • State of the art for this dataset is an accuracy of 91% • Our method can match this accuracy with only 16% labeled data • Going to a fully labeled dataset brings our model to an accuracy of 95% (on test data) as compared to 91% with state of the art. • This accuracy is higher than the nasal swab test that lies at 94% 8 60% 70% 80% 90% 100% 1% Labels 10% Labels 20% Labels 100% Labels Test data All data COVID-only data Baseline accuracy 91%
  • 9. © 2021 Samsung SDSA Confusion Matrices reveal the Benefits 9 Normal Pneumonia COVID-19 Normal 95% 5% 0% Pneumonia 5% 94% 1% COVID-19 5% 4% 91% Baseline Ground Truth Predicted Normal Pneumonia COVID-19 Normal 95% 5% 0% Pneumonia 7% 92% 1% COVID-19 3% 2% 95% Our model Predicted The confusion matrix over the test data shows what the model returns for each true category. Our model is less confused about COVID than the state-of-the-art model by 4%.
  • 10. © 2021 Samsung SDSA Conclusion: Combining pre-processing, feature engineering, distributed training, and active learning leads to the most accurate COVID-19 detection method to date. Organic Problems need Holistic Solutions • COVID-19 can be diagnosed accurately on the basis of a lung x-ray. • State of the art accuracy can be achieved by labeling only 16% of the images – saving 84% of the manual effort. • Using all labeled images (manual and automatic) increases the accuracy to 95%. • This methodology relies on multiple techniques of pre-processing and automated feature engineering as well as distributed training to work in realistic time-scale • Result: COVID-19 diagnosis more accurate than a nasal swab! 10 Understand Data Prepare Data Model Evaluate Deploy Monitor Model Lifecycle Governance
  • 11. © 2021 Samsung SDSA Resources Further Information • Scientific paper: https://arxiv.org/abs/2103.05109 • Two-part popular article • https://www.linkedin.com/pulse/artificial- intelligence-covid-19-screening-covid-using- bangert/ • https://www.linkedin.com/pulse/teach- computer-vision-training-covid-scans-part-2- patrick-bangert/ • Demo video of the technology: https://youtu.be/wcP1fRPKXSU 11 Datasets used • https://github.com/agchung/Actualmed-COVID- chestxray-dataset • https://github.com/agchung/Figure1-COVID- chestxray-dataset • https://www.kaggle.com/c/rsna-pneumonia- detection-challenge/data • https://www.kaggle.com/tawsifurrahman/covid1 9-radiography-database • https://arxiv.org/pdf/2003.11597.pdf