Dragon's DNA
•Download as PPTX, PDF•
1 like•415 views
The document discusses DNA sequencing software. It describes a fast and accurate DNA sequencing assembly software for Windows that can assemble DNA sequences into contigs and directly compare trace data to nucleotide data. It handles over 100,000 samples from various sequence and file formats and accelerates proofreading and comparing nucleotides to trace peaks. Several other related DNA sequencing software are also mentioned such as DNA DYNAMO, DNA MASTER, and Mesto DNA program starter.
Report
Share
Report
Share
Recommended
Rice bosc2010 emboss
The document provides an update on the EMBOSS European Molecular Biology Open Software Suite project. It discusses new features added in the latest release including support for next-generation sequencing formats, additional data sources, and integration of ontologies. The EMBOSS team continues to work on improving interfaces and providing support to other projects.
Dna baser
The document discusses two bioinformatics software tools: DNA Baser and Darwin. DNA Baser is a tool for manual and automatic DNA sequence assembly, analysis, editing, and more. It allows for automation of sequence assembly through functions like end trimming, vector removal, and batch assembly of thousands of sequences. Darwin is an interpreted computer language for research in bioscience that provides libraries and functions for tasks like sequence comparison, alignment, phylogenetics, and more.
DNA analysis on your laptop: Spot the differences
Presentation/workshop at Tech Tuesday. Organized by Permanent Beta and Seats2meet, Utrecht. https://www.meetup.com/PermanentBeta/events/234410344/
Initial steps towards a production platform for DNA sequence analysis on the ...
Presented at the ISMB/ECCB 2011 conference. https://www.iscb.org/cms_addon/conferences/ismbeccb2011/highlights.php#HL13
IPA for DNA analysis
The document discusses interval position analysis (IPA), a method for analyzing DNA and RNA sequences. IPA calculates characteristics such as V, G, and g values based on the distances between similar elements in a sequence. The values of IPA characteristics are sensitive to the order of elements in a sequence. IPA can be used to construct phylogenetic trees and analyze local profiles of RNA sequences. Heap's law and rank distribution models are also discussed in relation to evaluating DNA segmentation.
137920
this is the project regarding the detection and analysis of DNA sequences,it provide the fascility to find the repets from the hudge data set.we can find tha all repeats which is occured in human body.
Genome assembly: then and now (with notes) — v1.2
This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly.
A version of this talk is also available on Slideshare without notes.
Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.
DNA of building software products - Fast track method
DNA of building software products - Fast track method - Presentation by Sharad Sharma,
Recommended
Rice bosc2010 emboss
The document provides an update on the EMBOSS European Molecular Biology Open Software Suite project. It discusses new features added in the latest release including support for next-generation sequencing formats, additional data sources, and integration of ontologies. The EMBOSS team continues to work on improving interfaces and providing support to other projects.
Dna baser
The document discusses two bioinformatics software tools: DNA Baser and Darwin. DNA Baser is a tool for manual and automatic DNA sequence assembly, analysis, editing, and more. It allows for automation of sequence assembly through functions like end trimming, vector removal, and batch assembly of thousands of sequences. Darwin is an interpreted computer language for research in bioscience that provides libraries and functions for tasks like sequence comparison, alignment, phylogenetics, and more.
DNA analysis on your laptop: Spot the differences
Presentation/workshop at Tech Tuesday. Organized by Permanent Beta and Seats2meet, Utrecht. https://www.meetup.com/PermanentBeta/events/234410344/
Initial steps towards a production platform for DNA sequence analysis on the ...
Presented at the ISMB/ECCB 2011 conference. https://www.iscb.org/cms_addon/conferences/ismbeccb2011/highlights.php#HL13
IPA for DNA analysis
The document discusses interval position analysis (IPA), a method for analyzing DNA and RNA sequences. IPA calculates characteristics such as V, G, and g values based on the distances between similar elements in a sequence. The values of IPA characteristics are sensitive to the order of elements in a sequence. IPA can be used to construct phylogenetic trees and analyze local profiles of RNA sequences. Heap's law and rank distribution models are also discussed in relation to evaluating DNA segmentation.
137920
this is the project regarding the detection and analysis of DNA sequences,it provide the fascility to find the repets from the hudge data set.we can find tha all repeats which is occured in human body.
Genome assembly: then and now (with notes) — v1.2
This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly.
A version of this talk is also available on Slideshare without notes.
Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.
DNA of building software products - Fast track method
DNA of building software products - Fast track method - Presentation by Sharad Sharma,
Chenoweth os bridge 2015 pp
DNA testing has become the "gold standard" of forensics, but linking an item of evidence to a person of interest isn't always clear cut. New open source tools allow DNA analysts to give statistical weight to evidentiary profiles that were previously unusable, letting juries weigh the evidence for themselves. This talk will discuss the Lab Retriever software package for probabilistic genotyping.
Genome and Proteome data integration in RDF
The document summarizes integrating genome and proteome data from Francisella tularensis in RDF. It discusses integrating data from multiple sources, including genome annotations, proteomics experiments, and transcriptomics data. Semantic data integration across "omes" data silos is demonstrated using RDF and the open source Sesame framework. Reifying biological statements, such as identified peptides and abundances, allows more complex queries across the integrated data.
Kishor Presentation
The document discusses analysis of DNA microarray data using various techniques including gene-based, gene set, and functional group approaches. It describes preprocessing methods, platforms like Affymetrix, and tools for analysis including LIMMA and GSEA. Applications mentioned include biomarker discovery, clinical outcomes, and regulatory network analysis.
Profile A.I.Macan Markar & Co.
A I Macan Markar & Co is a chartered accountancy firm founded in 1946 in Sri Lanka. It has 4 partners and provides auditing, taxation, management consulting, and IT services to clients across various industries. The firm also has associated companies that offer secretarial services, management consulting, and legal advice.
Biology for Computer Engineers:Part 1(www.ubio.in)
ubio is starting a series of biology tutorials aimed at introducing biology, biotechnology and bioinformatics to computer engineers. The first part of the presentation is essentially a biochemistry tutorial that introduces molecular biochemistry.
Application of Marker Assisted Selection (MAS) for the improvement of Bean Co...
The document summarizes efforts to develop common bean varieties in Rwanda resistant to Bean Common Mosaic Necrotic Virus (BCMNV) using Marker Assisted Selection (MAS). Researchers screened 219 bean varieties and identified genes conferring resistance. They developed 86 breeding lines by crossing donor lines containing resistance genes with local varieties. These lines were selected using linked markers and for resistance to BCMNV and other diseases. Participatory plant breeding involved farmers in selection. The integration of conventional breeding and MAS was successful in pyramiding resistance genes and developing lines adapted to Rwanda.
Biology DNA Analysis
- DNA molecules are very long and consist of millions of base pairs. To study their structure, restriction enzymes are used to cut the DNA molecules into smaller, easier to analyze fragments at specific recognition sites.
- The fragments produced can be separated by gel electrophoresis based on their size, with shorter fragments traveling farther through the gel. This produces a pattern called a genetic fingerprint that can be used for applications like genetic profiling in criminal cases.
- The human genome project aimed to map all human genes by determining the full DNA sequence. While about 3% of human DNA codes for proteins, other non-coding "junk DNA" may have undiscovered functions and contains regions of repeated sequences that vary between individuals.
Recent biotechnology innovations
The document summarizes several recent biotechnology innovations, including using oil-eating bacteria to clean up oil spills, using a protein called GDF 11 to improve aging brains and muscles in mice, developing advanced biofuels from cellulosic biomass, using 3D x-ray filming to study insect movements, discovering anti-psychotic drugs that kill brain cancer, developing affordable genome sequencing technology, engineering immune cells to attack cancer, creating RNA detection probes without harming cells, and assessing monoclonal antibody therapies using ADCC reporter assays.
Biotechnological toools & their applications
Now days Biotech Era, What is application of biotechnology in Agriculture, Plantation and fertilizer. If we want to Improve qualitative and quantitative of Agri & Plantation then we definitely need of applying Biotechnological application.
Back to Basics: Fundamental Concepts and Special Considerations in gDNA Isola...
This document provides an overview of genomic DNA (gDNA) isolation. It discusses key considerations for gDNA isolation including sample stabilization, disruption, and storage. Common isolation technologies like silica membrane and magnetic bead kits are described. The document reviews measuring gDNA concentration and quality via UV spectroscopy and gel electrophoresis. It also provides guidance on selecting appropriate QIAGEN gDNA isolation kits based on sample type.
Analysis and Interpretation of Cell-free DNA
Identification and monitoring of cancer mutations from cell free DNA-Seq data is a key application in liquid biopsy. In this part of the webinar we will show how mutations can be best identified from this type of data and how they can be interpreted. Furthermore, potential challenges when analyzing this type of data will be discussed together with relevant strategies.
Statistical approaches for the interpretation of DNA evidence
This document discusses different statistical approaches for interpreting DNA evidence, including allele-centric and genotype-centric approaches. It describes probability of exclusion/inclusion, random match probability, and likelihood ratios. Likelihood ratios are considered the preferred approach as they make use of more information, provide a better estimation of evidence strength, and can model uncertainties in DNA sample composition. International consensus now recommends probabilistic and likelihood ratio approaches over classical methods for DNA evidence interpretation.
Evaluating allelic drop-out probabilities using a Monte-Carlo simulation appr...
The presentation introduces the principles behind the Monte-Carlo estimator used for the allelic drop-out probablities
DNA DRAGON
This document discusses the DNA sequencing software DNA Dragon. It provides an introduction stating that DNA Dragon is sequence assembly and editing software that can assemble sequences from files like FASTA and Genbank. It also allows users to compare trace data to nucleotide data and perform proofreading and base editing. The benefits section notes that DNA Dragon is fast, can assemble sequences, and is helpful for proofreading and editing. The conclusion restates that DNA Dragon helps assemble DNA sequences and process next generation sequence data accurately.
Enabling Large Scale Sequencing Studies through Science as a Service
Now
“Now” generation sequencing has drastically changed the traditional costs and infrastructure within the sequencing community. There are several technologies, platforms and algorithms that show promise, but it is not always intuitive where to start. This uncertainty is compounded by the fact that commonly used analysis tools are difficult to build, maintain, and run effectively. Sample acquisition and preparation is quickly becoming a bottleneck as projects move from small sample sizes to hundreds or even thousands of samples. We will present case studies highlighting information, methods, challenges and opportunities in leveraging large scale high throughput sequencing and bioinformatics. Specifically we will highlight a recent genome-wide study of methylation patterns in 1575 individuals with Schizophrenia. We will also discuss several cancer transcriptome and exome sequencing projects as well as a human pathogen transcriptome characterization project consisting of multiple organisms and almost a billion reads.
The Future
The Ion Torrent PGM machine is a very promising, rapid throughput, ultra scalable sequencer that could play an integral part in future human health studies. Applications such as microbial whole genome sequencing, metagenomic characterization of environmental and microbiome sample, and targeted resequencing projects stand to benefit from this technology over time. To date we have completed more than 25 runs on a single PGM and will comment on the setup as well as sequence data and analysis.
DNA Baser and Darwin
The document discusses two bioinformatics software tools: DNA Baser and Darwin. DNA Baser is a tool for manual and automatic DNA sequence assembly, analysis, editing, and more. It allows for automation of sequence assembly through functions like end trimming, vector removal, and batch assembly of thousands of sequences. Darwin is an interpreted computer language for research in bioscience that provides libraries and functions for tasks like sequence comparison, alignment, phylogenetics, and more.
White Paper: Next-Generation Genome Sequencing Using EMC Isilon Scale-Out NAS...
This EMC Isilon sizing and performance guideline White Paper reviews the Key Performance Indicators (KPIs) that most strongly impact the production processes for the storage of data from Next-Generation Sequencing (NGS) workflows.
Abstract kita
This master's thesis discusses the development of a DNA relational database and experiments manipulating data. The author proposes a data model where the database is constructed from genome DNA and information tags that can be directly manipulated through chemical reactions. This allows similar data to be abstracted in parallel by taking advantage of how single-stranded DNA associates with complementary and similar strands. The relational data model is preferable for genome analysis requiring set operations on data with attributes. The author executes relational algebra experiments on the DNA database and develops a scheme to convert SQL queries to experimental operations. Computer analysis and chemical experiments on the resulting sequences successfully demonstrate data retrieval from the DNA relational database.
White Paper: Next-Generation Genome Sequencing Using EMC Isilon Scale-Out NAS...
This EMC Isilon sizing and performance guideline White Paper reviews the Key Performance Indicators (KPIs) that most strongly impact the production processes for the storage of data from Next-Generation Sequencing (NGS) workflows.
Understanding Genome
The document discusses major challenges in genome analysis including decoding genomes, developing software to store and analyze genomic data, and providing accessible genomic data. It describes databases like Ensembl, NCBI, and PATRIC that aim to address these challenges by automatically annotating genomes, storing genomic data in relational databases, and providing web interfaces for accessing and analyzing genomic information. The Ensembl database in particular stores annotated genomic sequences, alignments, and links to external data for multiple species in a MySQL database and provides tools for comparative genomics and querying genomic data.
Data base searching tool
This document provides an overview of several database searching tools used for comparing biological sequences, including BLAST, FASTA, and ENTERZ. BLAST is commonly used to compare gene and protein sequences against public databases and find optimal local alignments. It breaks queries into fragments to seek matches. FASTA is a similar but faster homology search tool. ENTERZ allows text-based searches across various NCBI biological databases and integrates cross-referenced information. The document discusses the types of BLAST searches and advantages of database systems like reduced redundancy and faster access, as well as disadvantages such as complexity and costs.
WWW in biotechnology
The document discusses the usage of the World Wide Web (WWW) in biotechnology. It defines the WWW as a collection of websites connected via the internet. Sir Tim Berners Lee invented the core technologies that formed the basis of the modern web in 1989-1990, including HTML, URLs, and HTTP. The web has become essential for research, allowing access to papers, journals, databases of genetic sequences and other resources. Key databases discussed include GenBank, EMBL, and tools like BLAST are used for sequence comparison and analysis of molecular phylogeny.
More Related Content
Viewers also liked
Chenoweth os bridge 2015 pp
DNA testing has become the "gold standard" of forensics, but linking an item of evidence to a person of interest isn't always clear cut. New open source tools allow DNA analysts to give statistical weight to evidentiary profiles that were previously unusable, letting juries weigh the evidence for themselves. This talk will discuss the Lab Retriever software package for probabilistic genotyping.
Genome and Proteome data integration in RDF
The document summarizes integrating genome and proteome data from Francisella tularensis in RDF. It discusses integrating data from multiple sources, including genome annotations, proteomics experiments, and transcriptomics data. Semantic data integration across "omes" data silos is demonstrated using RDF and the open source Sesame framework. Reifying biological statements, such as identified peptides and abundances, allows more complex queries across the integrated data.
Kishor Presentation
The document discusses analysis of DNA microarray data using various techniques including gene-based, gene set, and functional group approaches. It describes preprocessing methods, platforms like Affymetrix, and tools for analysis including LIMMA and GSEA. Applications mentioned include biomarker discovery, clinical outcomes, and regulatory network analysis.
Profile A.I.Macan Markar & Co.
A I Macan Markar & Co is a chartered accountancy firm founded in 1946 in Sri Lanka. It has 4 partners and provides auditing, taxation, management consulting, and IT services to clients across various industries. The firm also has associated companies that offer secretarial services, management consulting, and legal advice.
Biology for Computer Engineers:Part 1(www.ubio.in)
ubio is starting a series of biology tutorials aimed at introducing biology, biotechnology and bioinformatics to computer engineers. The first part of the presentation is essentially a biochemistry tutorial that introduces molecular biochemistry.
Application of Marker Assisted Selection (MAS) for the improvement of Bean Co...
The document summarizes efforts to develop common bean varieties in Rwanda resistant to Bean Common Mosaic Necrotic Virus (BCMNV) using Marker Assisted Selection (MAS). Researchers screened 219 bean varieties and identified genes conferring resistance. They developed 86 breeding lines by crossing donor lines containing resistance genes with local varieties. These lines were selected using linked markers and for resistance to BCMNV and other diseases. Participatory plant breeding involved farmers in selection. The integration of conventional breeding and MAS was successful in pyramiding resistance genes and developing lines adapted to Rwanda.
Biology DNA Analysis
- DNA molecules are very long and consist of millions of base pairs. To study their structure, restriction enzymes are used to cut the DNA molecules into smaller, easier to analyze fragments at specific recognition sites.
- The fragments produced can be separated by gel electrophoresis based on their size, with shorter fragments traveling farther through the gel. This produces a pattern called a genetic fingerprint that can be used for applications like genetic profiling in criminal cases.
- The human genome project aimed to map all human genes by determining the full DNA sequence. While about 3% of human DNA codes for proteins, other non-coding "junk DNA" may have undiscovered functions and contains regions of repeated sequences that vary between individuals.
Recent biotechnology innovations
The document summarizes several recent biotechnology innovations, including using oil-eating bacteria to clean up oil spills, using a protein called GDF 11 to improve aging brains and muscles in mice, developing advanced biofuels from cellulosic biomass, using 3D x-ray filming to study insect movements, discovering anti-psychotic drugs that kill brain cancer, developing affordable genome sequencing technology, engineering immune cells to attack cancer, creating RNA detection probes without harming cells, and assessing monoclonal antibody therapies using ADCC reporter assays.
Biotechnological toools & their applications
Now days Biotech Era, What is application of biotechnology in Agriculture, Plantation and fertilizer. If we want to Improve qualitative and quantitative of Agri & Plantation then we definitely need of applying Biotechnological application.
Back to Basics: Fundamental Concepts and Special Considerations in gDNA Isola...
This document provides an overview of genomic DNA (gDNA) isolation. It discusses key considerations for gDNA isolation including sample stabilization, disruption, and storage. Common isolation technologies like silica membrane and magnetic bead kits are described. The document reviews measuring gDNA concentration and quality via UV spectroscopy and gel electrophoresis. It also provides guidance on selecting appropriate QIAGEN gDNA isolation kits based on sample type.
Analysis and Interpretation of Cell-free DNA
Identification and monitoring of cancer mutations from cell free DNA-Seq data is a key application in liquid biopsy. In this part of the webinar we will show how mutations can be best identified from this type of data and how they can be interpreted. Furthermore, potential challenges when analyzing this type of data will be discussed together with relevant strategies.
Statistical approaches for the interpretation of DNA evidence
This document discusses different statistical approaches for interpreting DNA evidence, including allele-centric and genotype-centric approaches. It describes probability of exclusion/inclusion, random match probability, and likelihood ratios. Likelihood ratios are considered the preferred approach as they make use of more information, provide a better estimation of evidence strength, and can model uncertainties in DNA sample composition. International consensus now recommends probabilistic and likelihood ratio approaches over classical methods for DNA evidence interpretation.
Evaluating allelic drop-out probabilities using a Monte-Carlo simulation appr...
The presentation introduces the principles behind the Monte-Carlo estimator used for the allelic drop-out probablities
Viewers also liked (13)
Biology for Computer Engineers:Part 1(www.ubio.in)
Biology for Computer Engineers:Part 1(www.ubio.in)
Application of Marker Assisted Selection (MAS) for the improvement of Bean Co...
Application of Marker Assisted Selection (MAS) for the improvement of Bean Co...
Back to Basics: Fundamental Concepts and Special Considerations in gDNA Isola...
Back to Basics: Fundamental Concepts and Special Considerations in gDNA Isola...
Statistical approaches for the interpretation of DNA evidence
Statistical approaches for the interpretation of DNA evidence
Evaluating allelic drop-out probabilities using a Monte-Carlo simulation appr...
Evaluating allelic drop-out probabilities using a Monte-Carlo simulation appr...
Similar to Dragon's DNA
DNA DRAGON
This document discusses the DNA sequencing software DNA Dragon. It provides an introduction stating that DNA Dragon is sequence assembly and editing software that can assemble sequences from files like FASTA and Genbank. It also allows users to compare trace data to nucleotide data and perform proofreading and base editing. The benefits section notes that DNA Dragon is fast, can assemble sequences, and is helpful for proofreading and editing. The conclusion restates that DNA Dragon helps assemble DNA sequences and process next generation sequence data accurately.
Enabling Large Scale Sequencing Studies through Science as a Service
Now
“Now” generation sequencing has drastically changed the traditional costs and infrastructure within the sequencing community. There are several technologies, platforms and algorithms that show promise, but it is not always intuitive where to start. This uncertainty is compounded by the fact that commonly used analysis tools are difficult to build, maintain, and run effectively. Sample acquisition and preparation is quickly becoming a bottleneck as projects move from small sample sizes to hundreds or even thousands of samples. We will present case studies highlighting information, methods, challenges and opportunities in leveraging large scale high throughput sequencing and bioinformatics. Specifically we will highlight a recent genome-wide study of methylation patterns in 1575 individuals with Schizophrenia. We will also discuss several cancer transcriptome and exome sequencing projects as well as a human pathogen transcriptome characterization project consisting of multiple organisms and almost a billion reads.
The Future
The Ion Torrent PGM machine is a very promising, rapid throughput, ultra scalable sequencer that could play an integral part in future human health studies. Applications such as microbial whole genome sequencing, metagenomic characterization of environmental and microbiome sample, and targeted resequencing projects stand to benefit from this technology over time. To date we have completed more than 25 runs on a single PGM and will comment on the setup as well as sequence data and analysis.
DNA Baser and Darwin
The document discusses two bioinformatics software tools: DNA Baser and Darwin. DNA Baser is a tool for manual and automatic DNA sequence assembly, analysis, editing, and more. It allows for automation of sequence assembly through functions like end trimming, vector removal, and batch assembly of thousands of sequences. Darwin is an interpreted computer language for research in bioscience that provides libraries and functions for tasks like sequence comparison, alignment, phylogenetics, and more.
White Paper: Next-Generation Genome Sequencing Using EMC Isilon Scale-Out NAS...
This EMC Isilon sizing and performance guideline White Paper reviews the Key Performance Indicators (KPIs) that most strongly impact the production processes for the storage of data from Next-Generation Sequencing (NGS) workflows.
Abstract kita
This master's thesis discusses the development of a DNA relational database and experiments manipulating data. The author proposes a data model where the database is constructed from genome DNA and information tags that can be directly manipulated through chemical reactions. This allows similar data to be abstracted in parallel by taking advantage of how single-stranded DNA associates with complementary and similar strands. The relational data model is preferable for genome analysis requiring set operations on data with attributes. The author executes relational algebra experiments on the DNA database and develops a scheme to convert SQL queries to experimental operations. Computer analysis and chemical experiments on the resulting sequences successfully demonstrate data retrieval from the DNA relational database.
White Paper: Next-Generation Genome Sequencing Using EMC Isilon Scale-Out NAS...
This EMC Isilon sizing and performance guideline White Paper reviews the Key Performance Indicators (KPIs) that most strongly impact the production processes for the storage of data from Next-Generation Sequencing (NGS) workflows.
Understanding Genome
The document discusses major challenges in genome analysis including decoding genomes, developing software to store and analyze genomic data, and providing accessible genomic data. It describes databases like Ensembl, NCBI, and PATRIC that aim to address these challenges by automatically annotating genomes, storing genomic data in relational databases, and providing web interfaces for accessing and analyzing genomic information. The Ensembl database in particular stores annotated genomic sequences, alignments, and links to external data for multiple species in a MySQL database and provides tools for comparative genomics and querying genomic data.
Data base searching tool
This document provides an overview of several database searching tools used for comparing biological sequences, including BLAST, FASTA, and ENTERZ. BLAST is commonly used to compare gene and protein sequences against public databases and find optimal local alignments. It breaks queries into fragments to seek matches. FASTA is a similar but faster homology search tool. ENTERZ allows text-based searches across various NCBI biological databases and integrates cross-referenced information. The document discusses the types of BLAST searches and advantages of database systems like reduced redundancy and faster access, as well as disadvantages such as complexity and costs.
WWW in biotechnology
The document discusses the usage of the World Wide Web (WWW) in biotechnology. It defines the WWW as a collection of websites connected via the internet. Sir Tim Berners Lee invented the core technologies that formed the basis of the modern web in 1989-1990, including HTML, URLs, and HTTP. The web has become essential for research, allowing access to papers, journals, databases of genetic sequences and other resources. Key databases discussed include GenBank, EMBL, and tools like BLAST are used for sequence comparison and analysis of molecular phylogeny.
Closing the Gap in Time: From Raw Data to Real Science
This document discusses science as a service (SaaS) and next-generation sequencing (NGS) data analysis. It summarizes challenges with exponential growth of NGS data, including data management, storage, analysis and sharing. It introduces Edge Bio's approach of distributing computational problems across cloud and HPC resources to avoid bottlenecks. Edge Bio provides full-service NGS analysis pipelines leveraging both commercial and open-source tools.
Molecular Biology Software Links
This document discusses software tools for molecular biology. It begins with an introduction to the structure software for identifying genetically homogeneous groups. It then lists related data analysis software called DAMBE. The bulk of the document lists and briefly describes 10 popular molecular biology software tools, including Serial Cloner, Artemis, Molecular Weight Calculator, SeqVerter, Geneious, Foxit Reader, Fast PCR, ApE, Cn3D, and BioToolKit. It concludes by stating that molecular biology software allows analyzing nucleic acid information from biological and chemical perspectives and applying models to develop hypotheses.
A Survey on Bioinformatics Tools
Bioinformatics may be defined as the field of science
in which biology, computer science, and information
technology merge to form a single discipline. Its ultimate
goal is to enable the discovery of new biological insights as
well as to create a global perspective from which unifying
principles in biology can be discerned by means of
bioinformatics tools for storing, retrieving, organizing and
analyzing biological data. Also most of these tools possess
very distinct features and capabilities making a direct
comparison difficult to be done. In this paper we propose
taxonomy for characterizing bioinformatics tools and briefly
surveys major bioinformatics tools under each categories.
Hopefully this study will stimulate other designers
and
experienced end users understand the details of particular
tool categories/tools, enabling them to make the best choices
for their particular research interests.
Ugene
UGENE is bioinformatics software that allows users to analyze genetic data such as sequences, annotations, alignments, and NGS assemblies. It integrates dozens of biological tools and provides a graphical interface for tasks like sequence analysis, alignment, and phylogenetics. Workflows can also be created to automate multi-step analyses and are executed locally on the user's computer. UGENE supports many data formats and runs on Windows, macOS, and Linux.
3003 eve 1
The document describes BioMAJ, a workflow engine dedicated to bio-data synchronization and processing. BioMAJ was developed to automatically and reliably download remote data, synchronize local and remote data by checking for errors, apply formatting, and make data available for users and applications. It provides predefined workflows for major biological databases and an indexing script library to format biological data. BioMAJ allows flexibility in managing biological sequence databases while enabling new workflows to be quickly implemented through description files.
Chambwe bosc2010
The document describes the Goby framework for efficient analysis of next-generation sequencing data. It introduces the Goby file formats which use Protocol Buffers to provide a structured, efficient and language-independent representation of sequencing data. The Goby formats allow for faster parsing, compression, random access and streaming compared to other file formats. The Goby software framework includes readers, writers, iterators and utilities for common analysis tasks like alignment processing and RNA-seq analysis.
API-Centric Data Integration for Human Genomics Reference Databases: Achieve...
API-Centric Data Integration for Human Genomics Reference Databases: Achieve...Genomika Diagnósticos
API-Centric Data Integration for Human Genomics Reference Databases: Achievements, Lessons Learned and Challenges
X-Meeting 2015
Authors: Jamisson Freitas, Marcel Caraciolo, Victor Diniz, Rodrigo Alexandre and João Bosco OliveiraBIOMAJ
The document describes BioMAJ, a workflow engine dedicated to bio-data synchronization and processing. BioMAJ was developed to provide a reliable workflow engine that can download remote data, apply formatting, and make the data available for users and applications. It allows flexible management of sequence databases on a site and rapid implementation of new workflows through bank description files. BioMAJ provides functions for synchronization, pre-processing, post-processing, and supervision of bioinformatics data workflows.
Journal of Computer Science Research | Vol.2, Iss.2 April 2020
The document describes two new designs for efficient transaction serialization for Internet of Things (IoT) devices: the Transaction Serial Format (TSF) and the Transaction Array Model (TAM). TSF provides a compact, non-parsed format that requires minimal processing for deserialization. TAM provides an internal data structure that needs minimal dynamic storage and directly uses elements from TSF. A performance comparison shows TSF reduces deserialization time by more than 80% compared to a popular XML library.
217954603 srs-hos-informantion-system
homework help,online homework help,online tutors,online tutoring,research paper help,do my homework,
https://www.homeworkping.com/
IEEE Information forensic and security Title and Abstract 2016
For Details, Contact TSYS Academic Projects.
Ph: 9841103123, 044-42607879
Website: http://www.tsys.co.in/
Mail Id: tsysglobalsolutions2014@gmail.com.
Similar to Dragon's DNA (20)
Enabling Large Scale Sequencing Studies through Science as a Service
Enabling Large Scale Sequencing Studies through Science as a Service
White Paper: Next-Generation Genome Sequencing Using EMC Isilon Scale-Out NAS...
White Paper: Next-Generation Genome Sequencing Using EMC Isilon Scale-Out NAS...
White Paper: Next-Generation Genome Sequencing Using EMC Isilon Scale-Out NAS...
White Paper: Next-Generation Genome Sequencing Using EMC Isilon Scale-Out NAS...
Closing the Gap in Time: From Raw Data to Real Science
Closing the Gap in Time: From Raw Data to Real Science
API-Centric Data Integration for Human Genomics Reference Databases: Achieve...
API-Centric Data Integration for Human Genomics Reference Databases: Achieve...
Journal of Computer Science Research | Vol.2, Iss.2 April 2020
Journal of Computer Science Research | Vol.2, Iss.2 April 2020
IEEE Information forensic and security Title and Abstract 2016
IEEE Information forensic and security Title and Abstract 2016
More from university of education,Lahore
Activites and Time Planning
This document discusses activities and time planning for software project management. It covers topics like motivation for studying project management due to poor track records of IT projects, the definition of a project, attributes of projects, examples of IT projects, and the nine knowledge areas of project management. It also discusses a hierarchy of activities including work breakdown structure, advantages and disadvantages of project management, and the growing project management profession.
Steganography
This document provides an introduction to steganography. It defines steganography as concealing a file within another file by hiding information in images, audio, or video. The document outlines the history of steganography and its applications. It also discusses basic terminology, fields related to information hiding, steganalysis, and some common steganography tools. The document concludes with describing steganographic techniques such as least significant bit substitution and exercises for readers.
Classical Encryption Techniques
The document discusses classical encryption techniques, including symmetric encryption which uses the same key for encryption and decryption. It describes ciphers like the Caesar cipher which substitutes letters by shifting the alphabet, the monoalphabetic cipher with one substitution table, and the polyalphabetic Vigenère cipher which uses multiple substitution alphabets. The document also covers the Playfair cipher which encrypts letters in pairs using a 5x5 keyword matrix, and discusses cryptanalysis techniques for breaking classical ciphers.
Activites and Time Planning
This document discusses activities and time planning for software project management. It defines key project management terms like project, work breakdown structure, and knowledge areas. It also discusses the importance of project management given the poor track record of many IT projects. Effective project management can help deliver projects on time, on budget and meeting requirements through techniques like developing a work breakdown structure, defining roles and responsibilities, and managing scope, schedule, costs, quality and risks.
OSI Security Architecture
The document discusses the OSI security architecture and common network security threats and defenses. It begins with an introduction to the OSI security architecture proposed by ITU-T as a standard for defining and providing security across network layers. It then discusses (1) specific security mechanisms like encryption and digital signatures and pervasive mechanisms like security audits; (2) common passive and active security threats like eavesdropping and denial of service attacks; and (3) that passive attacks focus on prevention while active attacks require detection and recovery. It concludes with exercises asking about these topics.
Network Security Terminologies
The document discusses network security terminology such as threats, attacks, risk analysis, and cryptography. It defines common threats like spoofing, tampering, repudiation, and denial-of-service attacks. The document also outlines the steps for performing risk analysis and includes an exercise asking questions about finding, removing, and preventing vulnerabilities.
Project Scheduling, Planning and Risk Management
This document summarizes key points from Chapter 4 of Ian Sommerville's Software Engineering textbook. It discusses project management, including planning, scheduling, risk management, and the distinctive challenges of managing software projects. Specifically, it notes that good project management is essential for success, planning and estimating are iterative processes, and risk management involves identifying and mitigating potential threats to the project.
Software Testing and Debugging
This document provides an overview of software testing fundamentals. It discusses that software testing is a critical part of quality assurance and aims to identify errors by exercising a program with sample inputs and comparing actual outcomes to expected outcomes. There are different types of testing such as white box testing, which tests internal program structure, and black box testing, which tests external functionality without knowledge of internal structure. The document also outlines testing strategies, techniques for different types of tests, and the importance of testing in the software development process.
ePayment Methods
This document discusses various electronic payment methods. It describes e-payment systems and their importance for e-commerce. Then it outlines different types of e-payment systems including PayPal, Mondex, eBay, Bitcoin, digital wallets, digital cash, online stored value systems, digital accumulating balance payment systems, digital credit accounts, and digital checking. For each type, it provides details on how the system works and examples.
SEO
This document provides an overview of search engine optimization (SEO) including:
- Definitions of key SEO terms like search engines, crawling, indexing, and ranking algorithms.
- The basic SEO process including on-page and off-page optimization techniques.
- On-page optimization elements like titles, meta descriptions, internal links.
- Off-page optimization techniques like link building and social sharing.
- The difference between white hat and black hat SEO strategies.
- An introduction to Google algorithms like Panda, Penguin and Hummingbird.
- Recommended SEO tools to use.
A Star Search
The document discusses the A* search algorithm, which is an informed search or heuristic search algorithm. A* combines the best aspects of uniform cost search and greedy best-first search. It is guaranteed to find the shortest path to the goal, if such a path exists. A* evaluates nodes by using both the path cost from the start node to the current node, plus an estimate of the cost to get from the current node to the goal node. It prioritizes expanding the most promising nodes first, those with the lowest combined cost. A* is optimal and admissible if the heuristic function never overestimates the actual cost to the goal.
Enterprise Application Integration
This document discusses enterprise application integration (EAI). It defines EAI as the unrestricted sharing of data and business processes among any connected applications and data sources in an enterprise. The document outlines EAI architectures including multi-tier architectures with presentation, application, and data tiers. It also discusses middleware, which allows communication across different platforms and between legacy and modern applications. The benefits of EAI include lower development and maintenance costs through looser coupling of systems and quicker integration.
Uml Diagrams
The document discusses the different types of UML diagrams used for modeling software systems. There are two main categories of UML diagrams - structural diagrams, which depict the static elements of a system, and behavioral diagrams, which depict the dynamic behavior and interactions of system components. Some key UML diagram types discussed include class diagrams, component diagrams, deployment diagrams, activity diagrams, sequence diagrams, use case diagrams, and state machine diagrams. The document provides examples and brief explanations of when each diagram type is used.
eDras Max
Edraw Max is a comprehensive diagramming software that allows users to easily create a wide range of professional-looking diagrams, including flowcharts, org charts, network diagrams, and more. It has a large library of vector shapes and templates. The software has an intuitive Office-style interface and is easy to use, even for those with no training. Edraw Max allows users to quickly design diagrams using built-in templates and examples and arrange and style elements for professional results.
RAD Model
This document discusses methods for rapid software development. It covers topics like agile methods, extreme programming, rapid application development, and software prototyping. Some key points made are:
- Rapid development is needed to quickly respond to changing business needs, even if it means lower initial quality.
- Agile methods focus on iterative development and early delivery of working software that can evolve rapidly based on changing requirements.
- Rapid application development uses tools that facilitate rapid creation of interfaces and reports linked to a database.
- Visual programming allows rapid prototyping through a graphical interface but can cause coordination and maintenance issues for large projects.
Microsoft Project
Microsoft Project is a project management software that helps plan, assign resources, track progress, manage budgets, and analyze workloads for projects. It was first released in 1984 and acquired by Microsoft in 1985. The latest version is Microsoft Project 2013. It allows users to create project schedules and budgets, assign resources to tasks, track progress, and keep project teams aligned to complete projects on time and on budget. Microsoft Project provides robust management tools to help users efficiently and effectively manage all aspects of a project throughout its life cycle from planning to closing.
Itertaive Process Development
Iterative development breaks down software development into smaller chunks called iterations. In each iteration, features are designed, developed, and tested, with additional features added in subsequent iterations until a fully functional application is ready. The iterative process follows the ADCOT principles of analysis, design, coding, and testing. It progresses through phases of inception to identify high-level requirements, elaboration to deliver a working architecture, construction to incrementally develop features, and transition to deploy the application. Iterative development allows for backtracking and modifications between iterations, in contrast to the waterfall method which completes each development step in full before moving to the next.
Computer Aided Software Engineering Nayab Awan
The document discusses Computer Aided Software Engineering (CASE) tools. It defines CASE as the use of software tools to assist in software development and maintenance. It outlines that CASE tools can help improve quality, maintenance and project management. The document then describes different types of CASE tools, including diagramming, process modeling, project management, documentation, analysis, design, configuration management, programming, prototyping and quality assurance tools. It concludes that CASE tools can increase productivity, decrease costs and enhance product quality when used appropriately.
Lect 2 assessing the technology landscape
The document discusses various technologies that are shaping the enterprise integration landscape, including legacy systems, data warehousing, enterprise application integration, electronic commerce, web-enabled applications, XML, workflow management, distributed objects, components, UML, digital signatures, wireless devices, knowledge management, agent technology, interactive voice, and model driven architecture. It provides brief descriptions of each technology and some key challenges related to enterprise integration.
system level requirements gathering and analysis
The document discusses the importance of requirements gathering for project success. It notes that 70-80% of project failures can be attributed to poor requirements gathering, analysis, and management. While requirements gathering is critical, it is often overlooked or not allocated enough time. The document provides five key components of effective requirements gathering: clearly defining requirements before scope, identifying project and product requirements, adequately documenting requirements, selecting the right methodology, and engaging diverse users. It emphasizes that requirements gathering lays the foundation for a successful project.
More from university of education,Lahore (20)
Recently uploaded
clinical examination of hip joint (1).pdf
described clinical examination all orthopeadic conditions .
RHEOLOGY Physical pharmaceutics-II notes for B.pharm 4th sem students
Physical pharmaceutics notes for B.pharm students
Leveraging Generative AI to Drive Nonprofit Innovation
In this webinar, participants learned how to utilize Generative AI to streamline operations and elevate member engagement. Amazon Web Service experts provided a customer specific use cases and dived into low/no-code tools that are quick and easy to deploy through Amazon Web Service (AWS.)
Advanced Java[Extra Concepts, Not Difficult].docx
This is part 2 of my Java Learning Journey. This contains Hashing, ArrayList, LinkedList, Date and Time Classes, Calendar Class and more.
What is Digital Literacy? A guest blog from Andy McLaughlin, University of Ab...
What is Digital Literacy? A guest blog from Andy McLaughlin, University of Aberdeen
Wound healing PPT
This document provides an overview of wound healing, its functions, stages, mechanisms, factors affecting it, and complications.
A wound is a break in the integrity of the skin or tissues, which may be associated with disruption of the structure and function.
Healing is the body’s response to injury in an attempt to restore normal structure and functions.
Healing can occur in two ways: Regeneration and Repair
There are 4 phases of wound healing: hemostasis, inflammation, proliferation, and remodeling. This document also describes the mechanism of wound healing. Factors that affect healing include infection, uncontrolled diabetes, poor nutrition, age, anemia, the presence of foreign bodies, etc.
Complications of wound healing like infection, hyperpigmentation of scar, contractures, and keloid formation.
How to Setup Warehouse & Location in Odoo 17 Inventory
In this slide, we'll explore how to set up warehouses and locations in Odoo 17 Inventory. This will help us manage our stock effectively, track inventory levels, and streamline warehouse operations.
LAND USE LAND COVER AND NDVI OF MIRZAPUR DISTRICT, UP
This Dissertation explores the particular circumstances of Mirzapur, a region located in the
core of India. Mirzapur, with its varied terrains and abundant biodiversity, offers an optimal
environment for investigating the changes in vegetation cover dynamics. Our study utilizes
advanced technologies such as GIS (Geographic Information Systems) and Remote sensing to
analyze the transformations that have taken place over the course of a decade.
The complex relationship between human activities and the environment has been the focus
of extensive research and worry. As the global community grapples with swift urbanization,
population expansion, and economic progress, the effects on natural ecosystems are becoming
more evident. A crucial element of this impact is the alteration of vegetation cover, which plays a
significant role in maintaining the ecological equilibrium of our planet.Land serves as the foundation for all human activities and provides the necessary materials for
these activities. As the most crucial natural resource, its utilization by humans results in different
'Land uses,' which are determined by both human activities and the physical characteristics of the
land.
The utilization of land is impacted by human needs and environmental factors. In countries
like India, rapid population growth and the emphasis on extensive resource exploitation can lead
to significant land degradation, adversely affecting the region's land cover.
Therefore, human intervention has significantly influenced land use patterns over many
centuries, evolving its structure over time and space. In the present era, these changes have
accelerated due to factors such as agriculture and urbanization. Information regarding land use and
cover is essential for various planning and management tasks related to the Earth's surface,
providing crucial environmental data for scientific, resource management, policy purposes, and
diverse human activities.
Accurate understanding of land use and cover is imperative for the development planning
of any area. Consequently, a wide range of professionals, including earth system scientists, land
and water managers, and urban planners, are interested in obtaining data on land use and cover
changes, conversion trends, and other related patterns. The spatial dimensions of land use and
cover support policymakers and scientists in making well-informed decisions, as alterations in
these patterns indicate shifts in economic and social conditions. Monitoring such changes with the
help of Advanced technologies like Remote Sensing and Geographic Information Systems is
crucial for coordinated efforts across different administrative levels. Advanced technologies like
Remote Sensing and Geographic Information Systems
9
Changes in vegetation cover refer to variations in the distribution, composition, and overall
structure of plant communities across different temporal and spatial scales. These changes can
occur natural.
ISO/IEC 27001, ISO/IEC 42001, and GDPR: Best Practices for Implementation and...
Denis is a dynamic and results-driven Chief Information Officer (CIO) with a distinguished career spanning information systems analysis and technical project management. With a proven track record of spearheading the design and delivery of cutting-edge Information Management solutions, he has consistently elevated business operations, streamlined reporting functions, and maximized process efficiency.
Certified as an ISO/IEC 27001: Information Security Management Systems (ISMS) Lead Implementer, Data Protection Officer, and Cyber Risks Analyst, Denis brings a heightened focus on data security, privacy, and cyber resilience to every endeavor.
His expertise extends across a diverse spectrum of reporting, database, and web development applications, underpinned by an exceptional grasp of data storage and virtualization technologies. His proficiency in application testing, database administration, and data cleansing ensures seamless execution of complex projects.
What sets Denis apart is his comprehensive understanding of Business and Systems Analysis technologies, honed through involvement in all phases of the Software Development Lifecycle (SDLC). From meticulous requirements gathering to precise analysis, innovative design, rigorous development, thorough testing, and successful implementation, he has consistently delivered exceptional results.
Throughout his career, he has taken on multifaceted roles, from leading technical project management teams to owning solutions that drive operational excellence. His conscientious and proactive approach is unwavering, whether he is working independently or collaboratively within a team. His ability to connect with colleagues on a personal level underscores his commitment to fostering a harmonious and productive workplace environment.
Date: May 29, 2024
Tags: Information Security, ISO/IEC 27001, ISO/IEC 42001, Artificial Intelligence, GDPR
-------------------------------------------------------------------------------
Find out more about ISO training and certification services
Training: ISO/IEC 27001 Information Security Management System - EN | PECB
ISO/IEC 42001 Artificial Intelligence Management System - EN | PECB
General Data Protection Regulation (GDPR) - Training Courses - EN | PECB
Webinars: https://pecb.com/webinars
Article: https://pecb.com/article
-------------------------------------------------------------------------------
For more information about PECB:
Website: https://pecb.com/
LinkedIn: https://www.linkedin.com/company/pecb/
Facebook: https://www.facebook.com/PECBInternational/
Slideshare: http://www.slideshare.net/PECBCERTIFICATION
Pengantar Penggunaan Flutter - Dart programming language1.pptx
Pengantar Penggunaan Flutter - Dart programming language1.pptx
The History of Stoke Newington Street Names
Presented at the Stoke Newington Literary Festival on 9th June 2024
www.StokeNewingtonHistory.com
Recently uploaded (20)
RHEOLOGY Physical pharmaceutics-II notes for B.pharm 4th sem students
RHEOLOGY Physical pharmaceutics-II notes for B.pharm 4th sem students
Leveraging Generative AI to Drive Nonprofit Innovation
Leveraging Generative AI to Drive Nonprofit Innovation
Liberal Approach to the Study of Indian Politics.pdf
Liberal Approach to the Study of Indian Politics.pdf
What is Digital Literacy? A guest blog from Andy McLaughlin, University of Ab...
What is Digital Literacy? A guest blog from Andy McLaughlin, University of Ab...
B. Ed Syllabus for babasaheb ambedkar education university.pdf
B. Ed Syllabus for babasaheb ambedkar education university.pdf
How to Setup Warehouse & Location in Odoo 17 Inventory
How to Setup Warehouse & Location in Odoo 17 Inventory
LAND USE LAND COVER AND NDVI OF MIRZAPUR DISTRICT, UP
LAND USE LAND COVER AND NDVI OF MIRZAPUR DISTRICT, UP
ISO/IEC 27001, ISO/IEC 42001, and GDPR: Best Practices for Implementation and...
ISO/IEC 27001, ISO/IEC 42001, and GDPR: Best Practices for Implementation and...
Pengantar Penggunaan Flutter - Dart programming language1.pptx
Pengantar Penggunaan Flutter - Dart programming language1.pptx
Dragon's DNA
- 1. HABIBA ISHFAQ ROLL NO#3002 BS(HONS), BOTANY(E) UNIVERSITY OF EDUCATION OKARA CAMPUS university of education 1
- 2. Introduction Fast and robust assembly machine Easy to use interface Other related software Conclusion Reference university of education 2
- 3. It is a very fast and accurate DNA sequence assembly software for MS Windows (c) operating systems. The DNA sequences are assembled into consigns and a direct comparison of trace date with nucleotide data is possible. It also allows for proofreading and base editing.. university of education 3
- 5. Handles more than 100000 samples from sequence formats (FASTA, Gen Bank, EMBL, etc.), trace file formats (SCF, ABI, AB1) and next generation sequencing file formats (Illumine, SFF, GFF, ...). university of education 5
- 6. which accelerates the proofreading and the comparison of nucleotides with trace peaks. university of education 6
- 7. Stretching DNA Experiment with the forces involved and measure the relationship between the stretched DNA length and the force required to keep it stretched.. 7 university of education
- 8. DNA BASER DNA Baser Sequence Assembler is an easy-to-use program for DNA sequence assembly/alignment, DNA sequence analysis, DNA Sequence manipulation and conversion, counting editing and mutation detection. And some are named as… DNA DYNAMO, DNA MASTER Mesto DNA program starter university of education 8
- 9. Dragon DNA uses a fast and powerful index-based assembly machine and also supports easy/fast sequence trimming, base editing and proofreading! university of education 9
- 10. http://www.dna-dragon.com/index.php http://www.sequentix.de/software_seqasse m.php university of education 10