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Making ObamaCare Work With Big
Data
Healthcare Use Cases
About Bob
About Vishnu
Overview
•
•
•
•
•
•

What is wrong with healthcare?
What is ObamaCare?
What does patient data look like?
Risk Adjustment use case
Care Network use case
Apixio’s Big Data solutions
Poll
Are you a:
A. Programmer
B. Data scientist
C. Manager
D. Health IT technologist
E. Other?
What Is Wrong With Healthcare?

Fee-For-Service
Skyrocketing Cost
84 Million People
Under- or Un-Insured
Healthcare Reform
• Liberate Clinical Data
• Care Coordination
• Efficiency
• Risk Adjustment
What Does a Patient Look Like To A
Data Scientist?
Structured Data
Text
Scanned Documents
Decision Support Fails Without
Access to Required Clinical Data
How is Splenectomy documented?
% with
Pneumococcal
Vaccine

54%
Coded
29%

17%
Non-coded
71%

Coded
History

11/1/2013

No Coded
History in EHR

3x
lower
Poll:
What percent of the key clinical data to you
think is missing from the coded layer?
A.
B.
C.
D.

10-25 %
25-50 %
50-75%
75+ %
>63%
Missing
Real Patient Example

Coded Data

Free Text

Scanned
Documents

Other Data
Silos

Jonathan Everett & Bob Rogers
Question your assumptions about data.

17
18
Is it Heart Failure?

“Heart Failure”
in EHR problem list
… or Chart Failure?

Heart Failure

No Heart Failure
Where is the valuable data?
How Much Data Is There?
Sources: EHR Structured, EHR
Text, EHR Scanned, Claims, RAPS
200,000 Pts over 5 years  10 TB
Structured: 13 M unique codes
4.8 M CPT, 4.8 M ICD9

Narrative: 338 M unique codes
98 M CPT, 120 M ICD9
Use Case: Risk Adjustment
How risk scores are used
1.01

1.20
Risk Assessment & Risk Scores
CAD
ICD-9 746.85
HCC 138
Score: 0.312

Total Score:
0.6
+0.312
------------0.912
Risk Assessment & Risk Scores
Type II Diabetes
ICD-9 250.00
HCC 19
Score: 0.215

Decubitus Ulcer
ICD-9 707.14
HCC 217
Score: 0.954

Total Score:
0.6
+0.215
+0.954
------------1.769
Where’s the beef?

Monitor

Evaluate

Assess

Treat
Manual Chart Audit

1 hour per chart
100,000 patients
=11.4 PERSON-YEARS!
Use Case: Care Network

Referring MD represented in Green
Consulting MD represented in Blue

29
Care Network- Referrals of Interest

Referring MD represented in Green
Consulting MD represented in Blue

30
How Do We Solve These Problems?
Apixio Architecture High Level
Client  Ingest Pipeline

Clinical Knowledge Exchange

Application

General
Event Stream

Care
Optimizer

HCC
Event Stream

Quality
Optimizer

Quality
Event Stream

HCC
Optimizer

Provider
files
EHR coded
data
EHR text
documents
EHR scan
documents

Parse
OCR
Norm.
Load

Patient
Object
Model

API
Referral
Event Stream

Claims

Eligibility

3rd Party
Event Stream

3rd Party
Event Stream
Apixio Platform Physical Architecture
External Clients

End Users

Apixio Pipeline
Receiver (HTTP)

Web Tier
Java/Python
Metrics (Graphite)

Apixio REST API
Logging
(Hive/Trace CF)
Job Control
Compute

Pipeline
Applications

Experimental
Infrastructure

Audit
(Trace CF)

Logging
Persistence

Cassandra

Hive/HDFS

S3
Apixio Platform Logical Architecture

• Append Only Model
in Cassandra

• Document Based

L0

L1
• Event Based Append
Only Model
• Transient (Stored in
HDFS)
• Used for Inference

• Application Specific
Data Model

• Optimized for Quick
Retrieval

L2
L0 – Document Level
• Stored in cassandra
• 2 Column Family / Customer
• Append only
Documents Column Family
DOCID1

DOCID2

DOCID3

Partial Patient
Object

ApixioID

Partial Patient
Object

Partial Patient
Object

Indices Column Family (2 types of data)
DocID:<DOCID>

ApixioID
APIXIOID

DocHash:<HASH>

ApixioID
APIXIOID
L1 – Event Streams
Cassandra

HIVE/HDFS

An event is an assertion (fact) about a specific
subject (patient) at a specific time
Event Extraction & Inference
Mapper

Reducer

Cassandra

HIVE/HDFS
Converts Documents/Patients to Events

Combines multiple events to create new events
Event Extraction & Inference

Functional Composition of extractors/transformers
gives us a scalable flexible inference engine.
Auditing
• Access information stored in a tracing CF in cassandra
• Append only
• Keyed by document
Audit Column Family
Timestamp1

Timestamp2

Timestamp2

Activity Info

DocID

Activity Info

Activity Info

Parsing

User Access

Timeline
User Access

We can reconstruct the timeline of activity on
any document once it hits our system.
What happens when something goes
wrong?
• Comprehensive Logging through custom appenders (log4j)
• All pipeline level events are logged to a trace column family
• Real-time metrics logged through graphite.
Thanks!

vvyas@apixio.com
@vishnuvyas

bob@apixio.com
@scientistBob

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Making obamacare work with Big Data

  • 1. Making ObamaCare Work With Big Data Healthcare Use Cases
  • 4. Overview • • • • • • What is wrong with healthcare? What is ObamaCare? What does patient data look like? Risk Adjustment use case Care Network use case Apixio’s Big Data solutions
  • 5. Poll Are you a: A. Programmer B. Data scientist C. Manager D. Health IT technologist E. Other?
  • 6. What Is Wrong With Healthcare? Fee-For-Service
  • 7. Skyrocketing Cost 84 Million People Under- or Un-Insured
  • 8. Healthcare Reform • Liberate Clinical Data • Care Coordination • Efficiency • Risk Adjustment
  • 9. What Does a Patient Look Like To A Data Scientist?
  • 11. Text
  • 13. Decision Support Fails Without Access to Required Clinical Data How is Splenectomy documented? % with Pneumococcal Vaccine 54% Coded 29% 17% Non-coded 71% Coded History 11/1/2013 No Coded History in EHR 3x lower
  • 14. Poll: What percent of the key clinical data to you think is missing from the coded layer? A. B. C. D. 10-25 % 25-50 % 50-75% 75+ %
  • 16. Real Patient Example Coded Data Free Text Scanned Documents Other Data Silos Jonathan Everett & Bob Rogers
  • 17. Question your assumptions about data. 17
  • 18. 18
  • 19. Is it Heart Failure? “Heart Failure” in EHR problem list
  • 20. … or Chart Failure? Heart Failure No Heart Failure
  • 21. Where is the valuable data?
  • 22. How Much Data Is There? Sources: EHR Structured, EHR Text, EHR Scanned, Claims, RAPS 200,000 Pts over 5 years  10 TB Structured: 13 M unique codes 4.8 M CPT, 4.8 M ICD9 Narrative: 338 M unique codes 98 M CPT, 120 M ICD9
  • 23. Use Case: Risk Adjustment
  • 24. How risk scores are used 1.01 1.20
  • 25. Risk Assessment & Risk Scores CAD ICD-9 746.85 HCC 138 Score: 0.312 Total Score: 0.6 +0.312 ------------0.912
  • 26. Risk Assessment & Risk Scores Type II Diabetes ICD-9 250.00 HCC 19 Score: 0.215 Decubitus Ulcer ICD-9 707.14 HCC 217 Score: 0.954 Total Score: 0.6 +0.215 +0.954 ------------1.769
  • 28. Manual Chart Audit 1 hour per chart 100,000 patients =11.4 PERSON-YEARS!
  • 29. Use Case: Care Network Referring MD represented in Green Consulting MD represented in Blue 29
  • 30. Care Network- Referrals of Interest Referring MD represented in Green Consulting MD represented in Blue 30
  • 31. How Do We Solve These Problems?
  • 32. Apixio Architecture High Level Client  Ingest Pipeline Clinical Knowledge Exchange Application General Event Stream Care Optimizer HCC Event Stream Quality Optimizer Quality Event Stream HCC Optimizer Provider files EHR coded data EHR text documents EHR scan documents Parse OCR Norm. Load Patient Object Model API Referral Event Stream Claims Eligibility 3rd Party Event Stream 3rd Party Event Stream
  • 33. Apixio Platform Physical Architecture External Clients End Users Apixio Pipeline Receiver (HTTP) Web Tier Java/Python Metrics (Graphite) Apixio REST API Logging (Hive/Trace CF) Job Control Compute Pipeline Applications Experimental Infrastructure Audit (Trace CF) Logging Persistence Cassandra Hive/HDFS S3
  • 34. Apixio Platform Logical Architecture • Append Only Model in Cassandra • Document Based L0 L1 • Event Based Append Only Model • Transient (Stored in HDFS) • Used for Inference • Application Specific Data Model • Optimized for Quick Retrieval L2
  • 35. L0 – Document Level • Stored in cassandra • 2 Column Family / Customer • Append only Documents Column Family DOCID1 DOCID2 DOCID3 Partial Patient Object ApixioID Partial Patient Object Partial Patient Object Indices Column Family (2 types of data) DocID:<DOCID> ApixioID APIXIOID DocHash:<HASH> ApixioID APIXIOID
  • 36. L1 – Event Streams Cassandra HIVE/HDFS An event is an assertion (fact) about a specific subject (patient) at a specific time
  • 37. Event Extraction & Inference Mapper Reducer Cassandra HIVE/HDFS Converts Documents/Patients to Events Combines multiple events to create new events
  • 38. Event Extraction & Inference Functional Composition of extractors/transformers gives us a scalable flexible inference engine.
  • 39. Auditing • Access information stored in a tracing CF in cassandra • Append only • Keyed by document Audit Column Family Timestamp1 Timestamp2 Timestamp2 Activity Info DocID Activity Info Activity Info Parsing User Access Timeline User Access We can reconstruct the timeline of activity on any document once it hits our system.
  • 40. What happens when something goes wrong? • Comprehensive Logging through custom appenders (log4j) • All pipeline level events are logged to a trace column family • Real-time metrics logged through graphite.

Editor's Notes

  1. (Bob- 71% pie chart shrinks off to show 3x danger) Health information tech