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Bram Zandbelt
bramzandbelt@gmail.com
@bbzandbelt
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Open science and the individual researcher:
one paper and three debates
Bram Zandbelt, 2017
POINT OF VIEW
How open science helps
researchers succeed
Abstract Open access, open data, open source and other open scholarship practices are growing in
popularity and necessity. However, widespread adoption of these practices has not yet been
achieved. One reason is that researchers are uncertain about how sharing their work will affect their
careers. We review literature demonstrating that open research is associated with increases in
citations, media attention, potential collaborators, job opportunities and funding opportunities.
These findings are evidence that open research practices bring significant benefits to researchers
relative to more traditional closed practices.
DOI: 10.7554/eLife.16800.001
ERIN C MCKIERNAN*
, PHILIP E BOURNE, C TITUS BROWN, STUART BUCK,
AMYE KENALL, JENNIFER LIN, DAMON MCDOUGALL, BRIAN A NOSEK,
KARTHIK RAM, COURTNEY K SODERBERG, JEFFREY R SPIES, KAITLIN THANEY,
ANDREW UPDEGROVE, KARA H WOO AND TAL YARKONI
Introduction
Recognition and adoption of open research
practices is growing, including new policies that
increase public access to the academic literature
(open access; Bjo¨rk et al., 2014; Swan et al.,
2015) and encourage sharing of data (open
data; Heimsta¨dt et al., 2014; Michener, 2015;
Stodden et al., 2013), and code (open
source; Stodden et al., 2013; Shamir et al.,
2013). Such policies are often motivated by ethi-
cal, moral or utilitarian arguments (Suber, 2012;
Willinsky, 2006), such as the right of taxpayers
to access literature arising from publicly-funded
research (Suber, 2003), or the importance of
public software and data deposition for repro-
ducibility (Poline et al., 2012; Stodden, 2011;
Ince et al., 2012). Meritorious as such argu-
ments may be, however, they do not address
the practical barriers involved in changing
researchers’ behavior, such as the common per-
ception that open practices could present a risk
to career advancement. In the present article,
we address such concerns and suggest that the
benefits of open practices outweigh the poten-
tial costs.
We take a researcher-centric approach in out-
lining the benefits of open research practices.
Researchers can use open practices to their
advantage to gain more citations, media atten-
tion, potential collaborators, job opportunities
and funding opportunities. We address common
myths about open research, such as concerns
about the rigor of peer review at open access
journals, risks to funding and career advance-
ment, and forfeiture of author rights. We recog-
nize the current pressures on researchers, and
offer advice on how to practice open science
within the existing framework of academic evalu-
ations and incentives. We discuss these issues
with regard to four areas – publishing, funding,
resource management and sharing, and career
advancement – and conclude with a discussion
of open questions.
Publishing
Open publications get more citations
There is evidence that publishing openly is asso-
ciated with higher citation rates (Hitch-
cock, 2016). For example, Eysenbach reported
that articles published in the Proceedings of the
National Academy of Sciences (PNAS) under
their open access (OA) option were twice as
likely to be cited within 4–10 months and nearly
three times as likely to be cited 10–16 months
after publication than non-OA articles published
*For correspondence:
emckiernan@ciencias.unam.mx
Reviewing editor: Peter
Rodgers, eLife, United Kingdom
Copyright McKiernan et al.
This article is distributed under
the terms of the Creative
Commons Attribution License,
which permits unrestricted use
and redistribution provided that
the original author and source are
credited.
McKiernan et al. eLife 2016;5:e16800. DOI: 10.7554/eLife.16800 1 of 19
FEATURE ARTICLE
Bram Zandbelt, 2017
One paper
Overview lab meeting
1. Engaging in open science will boost my career
2. Engaging in open science will accelerate my research
3. Engaging in open science will improve the quality of my research
Proponent Opponent
vs.
Proponent Opponent
vs.
Proponent Opponent
vs.
Three debates
Motivation for discussing this paper
and having these debates
Bram Zandbelt, 2017
Four focus areas
Bram Zandbelt, 2017
Publishing Funding
CareerCode & data sharing
Take home message:
Open science has many benefits for individual researchers
Bram Zandbelt, 2017
Open publishing
… comes with greater visibility
… lets you retain author rights and control reuse of materials
… enables you to benefit from transparent peer review
… can be achieved in many ways
… can be low-cost and even free of charge
Practicing open science
… provides you with new funding opportunities
… enables you to comply with funder mandates
Code and data sharing
… facilitates reuse and responding to requests
… promotes good research practices and reduces errors
… is beginning to be acknowledged
… comes with greater visibility
… helps you increase your research output
Practicing open science
… provides new opportunities for scientific collaboration
… is increasingly valued and mandated by institutions
Bram Zandbelt, 2017
Publishing Funding
CareerCode & data sharing
Open publishing
comes with greater visibility
more citations
more page views
more social media posts
Bram Zandbelt, 2017Sources: McKiernan et al., eLife, 2016; Wang et al., Scientometrics, 2015;
Open publishing
lets you retain author rights and control reuse of materials
On the Role of the Striatum in Response Inhibition
Bram B. Zandbelt*, Matthijs Vink
Rudolf Magnus Institute of Neuroscience, Department of Psychiatry, University Medical Center Utrecht, Utrecht, The Netherlands
Abstract
Background: Stopping a manual response requires suppression of the primary motor cortex (M1) and has been linked to
activation of the striatum. Here, we test three hypotheses regarding the role of the striatum in stopping: striatum activation
during successful stopping may reflect suppression of M1, anticipation of a stop-signal occurring, or a slower response
build-up.
Methodology/Principal Findings: Twenty-four healthy volunteers underwent functional magnetic resonance imaging
(fMRI) while performing a stop-signal paradigm, in which anticipation of stopping was manipulated using a visual cue
indicating stop-signal probability, with their right hand. We observed activation of the striatum and deactivation of left M1
during successful versus unsuccessful stopping. In addition, striatum activation was proportional to the degree of left M1
deactivation during successful stopping, implicating the striatum in response suppression. Furthermore, striatum activation
increased as a function of stop-signal probability and was to linked to activation in the supplementary motor complex (SMC)
and right inferior frontal cortex (rIFC) during successful stopping, suggesting a role in anticipation of stopping. Finally, trial-
to-trial variations in response time did not affect striatum activation.
Conclusions/Significance: The results identify the striatum as a critical node in the neural network associated with stopping
motor responses. As striatum activation was related to both suppression of M1 and anticipation of a stop-signal occurring,
these findings suggest that the striatum is involved in proactive inhibitory control over M1, most likely in interaction with
SMC and rIFC.
Citation: Zandbelt BB, Vink M (2010) On the Role of the Striatum in Response Inhibition. PLoS ONE 5(11): e13848. doi:10.1371/journal.pone.0013848
Editor: Antoni Rodriguez-Fornells, University of Barcelona, Spain
Received July 21, 2010; Accepted October 15, 2010; Published November 4, 2010
Copyright: ß 2010 Zandbelt, Vink. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits
unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: This work was supported by the Netherlands Organization for Scientific Research (Veni grant to M.V.). The funders had no role in study design, data
collection and analysis, decision to publish, or preparation of the manuscript.
Competing Interests: The authors have declared that no competing interests exist.
* E-mail: b.b.zandbelt@umcutrecht.nl
Introduction
The ability to stop a response is crucial in everyday life. The
stop-signal paradigm [1] provides a framework for investigating
the processes underlying stopping. In this paradigm, go-signals
requiring a response are infrequently followed by a stop-signal,
indicating that the planned response should be stopped. Stopping
performance depends on the outcome of an interactive race
between a Go process (activated by the go-signal) building up to
response threshold and a Stop process (activated by the stop-signal)
that can inhibit the Go process [2]. The neural correlates of these
Go and Stop processes have been found in the higher motor
centers for eye movements [3,4], and such Go and Stop units are
thought to be present in the primary motor cortex (M1) as well [5].
Converging lines of evidence suggest that a fronto-basal ganglia
network is involved in controlling such Go and Stop units [for
review, see [6]]. The striatum, the main input station of the basal
ganglia, is considered an important region for stopping. Specifi-
cally, functional neuroimaging studies observe increased striatum
activation during successful versus unsuccessful stopping
[7,8,9,10,11], when comparing short to long stop-signal reaction
times [12], and with a parametric increase in stop-signal
probability [7,13]. Meta-analyses of functional neuroimaging
studies of response inhibition confirm that the striatum is
commonly recruited during stopping [14,15,16]. Clinical popula-
tions characterized by striatum dysfunction have stopping
impairments [13,17,18,19,20]. Finally, striatum lesions cause
stopping impairments in rats [21].
Three hypotheses have been put forward regarding the meaning
of stopping-related activation of the striatum. First, it may reflect
suppression of response-related M1 activation, as striatum
activation and M1 deactivation co-occur with successful stopping
[7,8]. Second, it may indicate anticipation of a stop-signal
occurring, given that striatum activation and response delaying
in order to improve stopping performance co-occur with
increasing stop-signal probability [7]. Third, it may reflect a
slower build-up of the Go process to response threshold, which
would allow the Stop process sufficient time to cancel the response
[8]. We refer to these concepts as the response suppression, stop-
signal anticipation, and response build-up hypotheses, respectively.
Here, we investigate the role of the striatum in stopping, testing
the hypotheses outlined above with a novel stop-signal paradigm
(Fig. 1), in which stop-signal probability was manipulated using a
visual cue. This enabled the measurement of response strategy
adjustments in anticipation of stop-signals. Furthermore, to
constrain waiting strategies that may limit the validity of the
stop-signal paradigm [22], subjects were required to make timed
rather than speeded responses [23]. We tested the hypotheses
outlined above, using fMRI subtraction and psychophysiological
interaction (PPI) analyses (Table 1). Specifically, we predict that if
PLoS ONE | www.plosone.org 1 November 2010 | Volume 5 | Issue 11 | e13848
Bram Zandbelt, 2017
Technical Note
Within-subject variation in BOLD-fMRI signal changes across
repeated measurements: Quantification and implications
for sample size
Bram B. Zandbelt,a,⁎ Thomas E. Gladwin,a
Mathijs Raemaekers,c
Mariët van Buuren,a
Sebastiaan F. Neggers,a
René S. Kahn,a
Nick F. Ramsey,b
and Matthijs Vinka
a
Rudolf Magnus Institute of Neuroscience, Department of Psychiatry, University Medical Center Utrecht, Utrecht, The Netherlands
b
Rudolf Magnus Institute of Neuroscience, Department of Neurosurgery, University Medical Center Utrecht, Utrecht, The Netherlands
c
Helmholtz Institute, Department of Functional Neurobiology, University of Utrecht, Utrecht, The Netherlands
Received 5 September 2007; revised 8 February 2008; accepted 14 April 2008
Available online 24 April 2008
Functional magnetic resonance imaging (fMRI) can be used to detect
experimental effects on brain activity across measurements. The success of
such studies depends on thesize of the experimental effect, the reliability of
the measurements, and the number of subjects. Here, we report on the
stability of fMRI measurements and provide sample size estimations
needed for repeated measurement studies. Stability was quantified in
terms of the within-subject standard deviation (σw) of BOLD signal
changes across measurements. In contrast to correlation measures of
stability, this statistic does not depend on the between-subjects variance in
the sampled group. Sample sizes required for repeated measurements of
the same subjects were calculated using this σw . Ten healthy subjects
performed a motor task on three occasions, separated by one week, while
being scanned. In order to exclude training effects on fMRI stability, all
subjects were trained extensively on the task. Task performance, spatial
activation pattern, and group-wise BOLD signal changes were highly
stable over sessions. In contrast, we found substantial fluctuations (up to
half the size of the group mean activation level) in individual activation
levels, both in ROIs and in voxels. Given this large degree of instability
over sessions, and the fact that the amount of within-subject variation
plays a crucial role in determining the success of an fMRI study with
repeated measurements, improving stability is essential. In order to guide
future studies, sample sizes are provided for a range of experimental
effects and levels of stability. Obtaining estimates of these latter two
variables is essential for selecting an appropriate number of subjects.
© 2008 Elsevier Inc. All rights reserved.
Keywords: fMRI; Reliability; Within-subject variation; Sample size; Motor
Introduction
The effect of an intervention, for example pharmacological
treatment or repetitive transcranial magnetic stimulation (rTMS),
can be investigated with repeated measurements on the same
subjects. By administering experimental and control treatment in
random order to the same group of subjects, the mean difference
between treatment conditions can be calculated and tested for
statistical significance. Recently, this type of study (i.e. crossover
design) has been applied to functional MRI (fMRI). For instance,
fMRI signal changes were observed in the motor cortex of patients
recovering from stroke after treatment with fluoxetine (Pariente
et al., 2001), in the amygdala following oxytocin administration
(Kirsch et al., 2005), and in the prefrontal cortex in response to a
catecholamine-O-methyltransferase inhibitor (Apud et al., 2007).
The success of such a design depends on statistical power, which in
turn depends on (a) the difference between experimental and control
treatment, (b) measurement error, and (c) sample size. For single-
session fMRI studies, the effect of measurement error on statistical
power and sample size has been determined (Desmond and Glover,
2002). These findings may not be valid for fMRI studies with
multiple sessions, however, as factors that are stable within a session
(e.g. subject position in the scanner) can differ between sessions
(Genovese et al., 1997). To obtain an estimate of this between-
session measurement error, a test–retest reliability analysis measur-
ing the same variable on the same sample of subjects should be
performed, in absence of any between-measurement experimental
manipulation.
A number of studies has investigated the test–retest reliability
of fMRI, and reported almost perfect (Aron et al., 2006; Fernandez
et al., 2003; Specht et al., 2003) to at best moderate reliability
(Raemaekers et al., 2007; Wei et al., 2004). The majority of studies
expressed test–retest reliability of fMRI signal changes in terms of
www.elsevier.com/locate/ynimg
NeuroImage 42 (2008) 196–206
⁎ Corresponding author. Rudolf Magnus Institute of Neuroscience,
University Medical Center Utrecht, Room A.01.126, P.O. Box 85500,
NL-3508 GA Utrecht, The Netherlands. Fax: +31 88 7555443.
E-mail address: b.b.zandbelt@umcutrecht.nl (B.B. Zandbelt).
Available online on ScienceDirect (www.sciencedirect.com).
1053-8119/$ - see front matter © 2008 Elsevier Inc. All rights reserved.
doi:10.1016/j.neuroimage.2008.04.183
“© 2010 Zandbelt, Vink. This is an open-access
article distributed under the terms of the Creative
Commons Attribution License, which permits
unrestricted use, distribution, and reproduction in
any medium, provided the original author and
source are credited.”
“© 2008 Elsevier Inc. All rights reserved.”
Non-Open Access Open Access
Open publishing
enables you to benefit from transparent peer review
Bram Zandbelt, 2017Sources: Dumas-Mallet et al., R Soc Open Sci, 2017; Kowalczuk et al., BMC Open, 2015;
© 2017 The Authors. Published by the Royal Society under the terms of the Creative Commons
Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use,
provided the original author and source are credited
Review History
RSOS-160254.R0 (Original submission)
Review form: Reviewer 1 (Malcolm Macleod)
Is the manuscript scientifically sound in its present form?
Yes
Are the interpretations and conclusions justified by the results?
Yes
Is the language acceptable?
Yes
Is it clear how to access all supporting data?
At this stage it is not clear. I would suggest they include details of all publications in a dataset
reposited e.g. at FigShare
Do you have any ethical concerns with this paper?
No
Low statistical power in biomedical science: a review of
three human research domains
Estelle Dumas-Mallet, Katherine S. Button, Thomas Boraud, Francois Gonon and Marcus
R. Munafò
Article citation details
R. Soc. open sci. 4: 160254.
http://dx.doi.org/10.1098/rsos.160254
Review timeline
Original submission: 12 April 2016
1st revised submission: 1 July 2016
2nd
revised submission: 14 October 2016
3rd revised submission: 2 December 2016
Final acceptance: 4 January 2017
Note: Reports are unedited and appear as
submitted by the referee. The review history
appears in chronological order.
on February 7, 2017http://rsos.royalsocietypublishing.org/Downloaded from
Some OA journals provide
open peer review
Open peer review has slightly higher quality
than single-blind peer review
Bram Zandbelt, 2017
Open publishing
can be achieved in multiple ways
Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
1. Open Access journals
Bram Zandbelt, 2017
AIMS Neurosci
BMC Neurosci
BMC Psychol
BMC Psychiatry
eLife
Front Hum Neurosci
Front Neurosci
Front Psychol
Scientific Data
Scientific Reports
Translational Psychiatry
Nat Commun
Nat Hum Behav
PeerJ
PLoS Biol
PLoS Comp Biol
PLoS ONE
R Soc Open Sci
eNeuro
Open publishing
can be achieved in multiple ways
1. Open Access journals
Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
Bram Zandbelt, 2017
Open publishing
can be achieved in multiple ways
2. Hybrid journals
Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
Bram Zandbelt, 2017
JEP General
JEP HPP
JEP LMC
Psych Rev
Psychol Bull
Current Biology
Neuron*
Trends Cogn Sci*
Trends Neurosci*
Biol Psychiatry
Cortex
Curr Opin Behav Sci
Curr Opin Neurosci
Curr Opin Psychol
Eur Neuropsychopharmacol
Neuroimage
Neuropsychologia
J Cogn Neurosci
Neuropsychopharmacol
Mol Psychiatry
Proc Natl Acad Sci
Brain
Cereb Cortex
Soc Cogn Affect Neurosci
Phil Trans R Soc B
J Neurosci
Att Perecpt Psychophys
Brain Struct Func
Cognitive Affect Behavior Neurosci
Exp Brain Res
Psychopharmacol
Eur J Neurosci
Hum Brain Mapp
Open publishing
can be achieved in multiple ways
2. Hybrid journals
Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
Bram Zandbelt, 2017
Open publishing
can be achieved in multiple ways
3. Self-archiving
Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
Bram Zandbelt, 2017
Science AIMS Neurosci JAMA Psychiatry
Ann Rev Neurosci
Ann Rev Psychol
J Neurophysiol
JEP General
JEP HPP
JEP LMC
Psych Rev
Psychol Bull
Am J Psychiatry
BMC Neurosci
BMC Psychol
BMC Psychiatry
Current Biology
Neuron
Trends Cogn Sci
Trends Neurosci
eLife
Biol Psychiatry
Cortex
Curr Opin Behav Sci
Curr Opin Neurosci
Curr Opin Psychol
Eur Neuropsychopharmacol
Neuroimage
Neuropsychologia
Front Hum Neurosci
Front Neurosci
Front Psychol
N Engl J Med J Cogn Neurosci
Nat Rev Neurosci
Neuropsychopharmacol
Scientific Data
Scientific Reports
Translational Psychiatry
Mol Psychiatry
Nature
Nat Commun
Nat Hum Behav
Nat Neurosci
Proc Natl Acad Sci
Brain
Cereb Cortex
Soc Cogn Affect Neurosci
PeerJ
PLoS Biol
PLoS Comp Biol
PLoS ONE
Phil Trans R Soc B
R Soc Open Sci
eNeuro
J Neurosci
Eur J Neurosci
Hum Brain Mapp
Att Perecpt Psychophys
Brain Struct Func
Cognitive Affect Behavior Neurosci
Exp Brain Res
Psychopharmacol
Open publishing
can be achieved in multiple ways
none
allowed
preprint
only
pre- &
postprint
all
allowed
pub PDF ✘ ✘ ✘ ✔
postprint ✘ ✘ ✔ ✔
preprint ✘ ✔ ✔ ✔
3. Self-archiving
Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
Open publishing
can be low-cost and even free of charge
1. Free of charge
R Soc Open Sci
Bram Zandbelt, 2017
Judgm Decis Mak
2. Free of charge in NL
Att Perecpt Psychophys
Brain Struct Func
Cognitive Affect Behavior Neurosci
Psychon Bull Rev
Psychopharmacol
Cogn Sci
Eur J Neurosci
Hum Brain Mapp
Psychophysiol
Topics Cogn Sci
Open publishing
can be low-cost and even free of charge
3. Low-cost
Bram Zandbelt, 2017
PeerJ ($399-499, lifetime) RIO Journal (€50-650) Glossa (£300)
J Open Psychol Data (£100)
J Open Res Software (£100)
Cogent Biology (pay what you can)
Cogent Psychology (pay what you can)
Collabra: Psychology ($875) F1000 Research ($1000)
SAGE Open ($395)
Bram Zandbelt, 2017
Publishing Funding
CareerCode & data sharing
Practicing open science
provides you with new funding opportunities
Individual fellowships
Open science awards
Replication
awards and grants
Preregistration awards
Travel grant
Bram Zandbelt, 2017Sources: McKiernan et al., eLife, 2016;
Publication policies Data archiving policies
Gold OA Green OA
Funder Whether Where Whether What When Where Whether What When Where
NWO (NL) Required
OA/
hybrid
Encouraged
Pub. PDF or
postprint
a.s.a.p.
Any
repository
Encouraged - - -
Welcome Trust
(UK)
Required
OA/
hybrid
Required
Pub. PDF or
postprint
< 6 mo.
after
publication
Europe PMC
or PMC
Required Data
At
publication
-
EC Horizon
2020 (EU)
Encouraged
OA/
hybrid
Required
Pub. PDF or
postprint
< 12 mo.
after
publication
Any
repository
Encouraged
Data
and
code
a.s.a.p.
Any
repository
ERC (EU) Encouraged - Encouraged
Pub. PDF or
postprint
a.s.a.p.
Any
repository
Encouraged
Data
and
code
< 6 mo.
after
publication
Any
repository
NIH (US) - - Required
Pub. PDF or
postprint
Required Data a.s.a.p.
Any
repository
Practicing open science
enables you to comply with funder mandates
Sources: https://http://www.sherpa.ac.uk/romeo/; data retrieved on Jan 20, 2017 Bram Zandbelt, 2017
Practicing open science
enables you to comply with funder mandates
Bram Zandbelt, 2017Sources: McKiernan et al., eLife, 2016;
Bram Zandbelt, 2017
Publishing Funding
CareerCode & data sharing
Code and data sharing
facilitates reuse and responding to requests
Can I have
a copy of your
data?I am
not sure where
my data is
Sources: Hanson, Surkis, Yacobucci, NYU Health Sciences Libraries, 2012; https://bit.ly/data_management_snafu Bram Zandbelt, 2017
Code and data sharing
promotes good research practices and reduces errors
Version control Documentation
Code review
unit testing
File organization
Fewer reporting errors in OA papers
Bram Zandbelt, 2017Sources: Wicherts et al., PLoS ONE, 2011
Good research practices
Code and data sharing
comes with increased visibility
Papers with open code
get more citations
Papers with open data
get more citations
Bram Zandbelt, 2017Sources: Vandewalle, Comput Sci Eng, 2012; Piwowar & Vision, PeerJ, 2013.
Code and data sharing
is beginning to be acknowledged
Bram Zandbelt, 2017Sources: https://osf.io/tvyxzl; Kidwell et al., PLoS Biol, 2016;
Code and data sharing
helps you increase your research output
Standalone code/data Data papers
Bram Zandbelt, 2017
Software papers
Bram Zandbelt, 2017
Publishing Funding
CareerCode & data sharing
Practicing open science
provides opportunities for scientific collaboration
Bram Zandbelt, 2017
RESEARCH ARTICLE SUMMARY
◥
PSYCHOLOGY
Estimating the reproducibility of
psychological science
Open Science Collaboration*
INTRODUCTION: Reproducibility is a defin-
ing feature of science, but the extent to which
it characterizes current research is unknown.
Scientific claims should not gain credence
because of the status or authority of their
originator but by the replicability of their
supporting evidence. Even research of exem-
plary quality may have irreproducible empir-
ical findings because of random or systematic
error.
RATIONALE: There is concern about the rate
and predictors of reproducibility, but limited
evidence. Potentially problematic practices in-
clude selective reporting, selective analysis, and
insufficient specification of the conditions nec-
essary or sufficient to obtain the results. Direct
replication is the attempt to recreate the con-
ditions believed sufficient for obtaining a pre-
viously observed finding and is the means of
establishing reproducibility of a finding with
new data. We conducted a large-scale, collab-
orative effort to obtain an initial estimate of
the reproducibility of psychological science.
RESULTS: We conducted replications of 100
experimental and correlational studies pub-
lished in three psychology journals using high-
powered designs and original materials when
available. There is no single standard for eval-
uating replication success. Here, we evaluated
reproducibility using significance and P values,
effect sizes, subjective assessments of replica-
tion teams, and meta-analysis of effect sizes.
The mean effect size (r) of the replication ef-
fects (Mr = 0.197, SD = 0.257) was half the mag-
nitude of the mean effect size of the original
effects (Mr = 0.403, SD = 0.188), representing a
substantial decline. Ninety-sevenpercent of orig-
inal studies had significant results (P < .05).
Thirty-six percent of replications had signifi-
cant results; 47% of origi-
nal effect sizes were in the
95% confidence interval
of the replication effect
size; 39% of effects were
subjectively rated to have
replicated the original re-
sult; and if no bias in original results is as-
sumed, combining original and replication
results left 68% with statistically significant
effects. Correlational tests suggest that repli-
cation success was better predicted by the
strength of original evidence than by charac-
teristics of the original and replication teams.
CONCLUSION: No single indicator sufficient-
ly describes replication success, and the five
indicators examined here are not the only
ways to evaluate reproducibility. Nonetheless,
collectively these results offer a clear conclu-
sion: A large portion of replications produced
weaker evidence for the original findings de-
spite using materials provided by the original
authors, review in advance for methodologi-
cal fidelity, and high statistical power to detect
the original effect sizes. Moreover, correlational
evidence is consistent with the conclusion that
variation in the strength of initial evidence
(such as original P value) was more predictive
of replication success than variation in the
characteristics of the teams conducting the
research (such as experience and expertise).
The latter factors certainly can influence rep-
lication success, but they did not appear to do
so here.
Reproducibility is not well understood be-
cause the incentives for individual scientists
prioritize novelty over replication. Innova-
tion is the engine of discovery and is vital for
a productive, effective scientific enterprise.
However, innovative ideas become old news
fast. Journal reviewers and editors may dis-
miss a new test of a published idea as un-
original. The claim that “we already know this”
belies the uncertainty of scientific evidence.
Innovation points out paths that are possible;
replication points out paths that are likely;
progress relies on both. Replication can in-
crease certainty when findings are reproduced
and promote innovation when they are not.
This project provides accumulating evidence
for many findings in psychological research
and suggests that there is still more work to
do to verify whether we know what we think
we know.
▪
RESEARCH
SCIENCE sciencemag.org 28 AUGUST 2015 • VOL 349 ISSUE 6251 943
The list of author affiliations is available in the full article online.
*Corresponding author. E-mail: nosek@virginia.edu
Cite this article as Open Science Collaboration, Science 349,
aac4716 (2015). DOI: 10.1126/science.aac4716
Original study effect size versus replication effect size (correlation coefficients). Diagonal
line represents replication effect size equal to original effect size. Dotted line represents replication
effect size of 0. Points below the dotted line were effects in the opposite direction of the original.
Density plots are separated by significant (blue) and nonsignificant (red) effects.
ON OUR WEB SITE
◥
Read the full article
at http://dx.doi.
org/10.1126/
science.aac4716
..................................................
onMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016Downloadedfrom
Bram Zandbelt, 2017
Practicing open science
provides opportunities for scientific collaboration
Bram Zandbelt, 2017
Practicing open science
provides opportunities for scientific collaboration
Practicing open science
enables you to contribute to open source projects
Bram Zandbelt, 2017
776 contributors
116 contributors 71 contributors
257 contributors
702 contributors
552 contributors
49 contributors
Practicing open science
is increasingly valued and mandated by institutions
Source: https://www.academictransfer.com; http://www.nicebread.de/open-science-hiring-practices/ Bram Zandbelt, 2017
Take home message:
Open science has many benefits for individual researchers
Bram Zandbelt, 2017
Open publishing
… comes with greater visibility
… lets you retain author rights and control reuse of materials
… enables you to benefit from transparent peer review
… can be achieved in many ways
… can be low-cost and even free of charge
Practicing open science
… provides you with new funding opportunities
… enables you to comply with funder mandates
Practicing open science
… provides new opportunities for scientific collaboration
… is increasingly valued and mandated by institutions
Code and data sharing
… facilitates reuse and responding to requests
… promotes good research practices and reduces errors
… is beginning to be acknowledged
… comes with greater visibility
… helps you increase your research output
… and we haven’t even talked about
the benefits of preregistration :-)
Sources: Wagenmakers & Dutilh (2016). APS Observer. Bram Zandbelt, 2017
Bram Zandbelt, 2017
Bram Zandbelt, 2017
Now, let’s learn about your views
1. Engaging in open science will boost my career
2. Engaging in open science will accelerate my research
3. Engaging in open science will improve the quality of my research
Proponent Opponent
vs.
Proponent Opponent
vs.
Proponent Opponent
vs.
Three debates

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Open science and the individual researcher

  • 2. POINT OF VIEW How open science helps researchers succeed Abstract Open access, open data, open source and other open scholarship practices are growing in popularity and necessity. However, widespread adoption of these practices has not yet been achieved. One reason is that researchers are uncertain about how sharing their work will affect their careers. We review literature demonstrating that open research is associated with increases in citations, media attention, potential collaborators, job opportunities and funding opportunities. These findings are evidence that open research practices bring significant benefits to researchers relative to more traditional closed practices. DOI: 10.7554/eLife.16800.001 ERIN C MCKIERNAN* , PHILIP E BOURNE, C TITUS BROWN, STUART BUCK, AMYE KENALL, JENNIFER LIN, DAMON MCDOUGALL, BRIAN A NOSEK, KARTHIK RAM, COURTNEY K SODERBERG, JEFFREY R SPIES, KAITLIN THANEY, ANDREW UPDEGROVE, KARA H WOO AND TAL YARKONI Introduction Recognition and adoption of open research practices is growing, including new policies that increase public access to the academic literature (open access; Bjo¨rk et al., 2014; Swan et al., 2015) and encourage sharing of data (open data; Heimsta¨dt et al., 2014; Michener, 2015; Stodden et al., 2013), and code (open source; Stodden et al., 2013; Shamir et al., 2013). Such policies are often motivated by ethi- cal, moral or utilitarian arguments (Suber, 2012; Willinsky, 2006), such as the right of taxpayers to access literature arising from publicly-funded research (Suber, 2003), or the importance of public software and data deposition for repro- ducibility (Poline et al., 2012; Stodden, 2011; Ince et al., 2012). Meritorious as such argu- ments may be, however, they do not address the practical barriers involved in changing researchers’ behavior, such as the common per- ception that open practices could present a risk to career advancement. In the present article, we address such concerns and suggest that the benefits of open practices outweigh the poten- tial costs. We take a researcher-centric approach in out- lining the benefits of open research practices. Researchers can use open practices to their advantage to gain more citations, media atten- tion, potential collaborators, job opportunities and funding opportunities. We address common myths about open research, such as concerns about the rigor of peer review at open access journals, risks to funding and career advance- ment, and forfeiture of author rights. We recog- nize the current pressures on researchers, and offer advice on how to practice open science within the existing framework of academic evalu- ations and incentives. We discuss these issues with regard to four areas – publishing, funding, resource management and sharing, and career advancement – and conclude with a discussion of open questions. Publishing Open publications get more citations There is evidence that publishing openly is asso- ciated with higher citation rates (Hitch- cock, 2016). For example, Eysenbach reported that articles published in the Proceedings of the National Academy of Sciences (PNAS) under their open access (OA) option were twice as likely to be cited within 4–10 months and nearly three times as likely to be cited 10–16 months after publication than non-OA articles published *For correspondence: emckiernan@ciencias.unam.mx Reviewing editor: Peter Rodgers, eLife, United Kingdom Copyright McKiernan et al. This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited. McKiernan et al. eLife 2016;5:e16800. DOI: 10.7554/eLife.16800 1 of 19 FEATURE ARTICLE Bram Zandbelt, 2017 One paper Overview lab meeting 1. Engaging in open science will boost my career 2. Engaging in open science will accelerate my research 3. Engaging in open science will improve the quality of my research Proponent Opponent vs. Proponent Opponent vs. Proponent Opponent vs. Three debates
  • 3. Motivation for discussing this paper and having these debates Bram Zandbelt, 2017
  • 4. Four focus areas Bram Zandbelt, 2017 Publishing Funding CareerCode & data sharing
  • 5. Take home message: Open science has many benefits for individual researchers Bram Zandbelt, 2017 Open publishing … comes with greater visibility … lets you retain author rights and control reuse of materials … enables you to benefit from transparent peer review … can be achieved in many ways … can be low-cost and even free of charge Practicing open science … provides you with new funding opportunities … enables you to comply with funder mandates Code and data sharing … facilitates reuse and responding to requests … promotes good research practices and reduces errors … is beginning to be acknowledged … comes with greater visibility … helps you increase your research output Practicing open science … provides new opportunities for scientific collaboration … is increasingly valued and mandated by institutions
  • 6. Bram Zandbelt, 2017 Publishing Funding CareerCode & data sharing
  • 7. Open publishing comes with greater visibility more citations more page views more social media posts Bram Zandbelt, 2017Sources: McKiernan et al., eLife, 2016; Wang et al., Scientometrics, 2015;
  • 8. Open publishing lets you retain author rights and control reuse of materials On the Role of the Striatum in Response Inhibition Bram B. Zandbelt*, Matthijs Vink Rudolf Magnus Institute of Neuroscience, Department of Psychiatry, University Medical Center Utrecht, Utrecht, The Netherlands Abstract Background: Stopping a manual response requires suppression of the primary motor cortex (M1) and has been linked to activation of the striatum. Here, we test three hypotheses regarding the role of the striatum in stopping: striatum activation during successful stopping may reflect suppression of M1, anticipation of a stop-signal occurring, or a slower response build-up. Methodology/Principal Findings: Twenty-four healthy volunteers underwent functional magnetic resonance imaging (fMRI) while performing a stop-signal paradigm, in which anticipation of stopping was manipulated using a visual cue indicating stop-signal probability, with their right hand. We observed activation of the striatum and deactivation of left M1 during successful versus unsuccessful stopping. In addition, striatum activation was proportional to the degree of left M1 deactivation during successful stopping, implicating the striatum in response suppression. Furthermore, striatum activation increased as a function of stop-signal probability and was to linked to activation in the supplementary motor complex (SMC) and right inferior frontal cortex (rIFC) during successful stopping, suggesting a role in anticipation of stopping. Finally, trial- to-trial variations in response time did not affect striatum activation. Conclusions/Significance: The results identify the striatum as a critical node in the neural network associated with stopping motor responses. As striatum activation was related to both suppression of M1 and anticipation of a stop-signal occurring, these findings suggest that the striatum is involved in proactive inhibitory control over M1, most likely in interaction with SMC and rIFC. Citation: Zandbelt BB, Vink M (2010) On the Role of the Striatum in Response Inhibition. PLoS ONE 5(11): e13848. doi:10.1371/journal.pone.0013848 Editor: Antoni Rodriguez-Fornells, University of Barcelona, Spain Received July 21, 2010; Accepted October 15, 2010; Published November 4, 2010 Copyright: ß 2010 Zandbelt, Vink. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Funding: This work was supported by the Netherlands Organization for Scientific Research (Veni grant to M.V.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Competing Interests: The authors have declared that no competing interests exist. * E-mail: b.b.zandbelt@umcutrecht.nl Introduction The ability to stop a response is crucial in everyday life. The stop-signal paradigm [1] provides a framework for investigating the processes underlying stopping. In this paradigm, go-signals requiring a response are infrequently followed by a stop-signal, indicating that the planned response should be stopped. Stopping performance depends on the outcome of an interactive race between a Go process (activated by the go-signal) building up to response threshold and a Stop process (activated by the stop-signal) that can inhibit the Go process [2]. The neural correlates of these Go and Stop processes have been found in the higher motor centers for eye movements [3,4], and such Go and Stop units are thought to be present in the primary motor cortex (M1) as well [5]. Converging lines of evidence suggest that a fronto-basal ganglia network is involved in controlling such Go and Stop units [for review, see [6]]. The striatum, the main input station of the basal ganglia, is considered an important region for stopping. Specifi- cally, functional neuroimaging studies observe increased striatum activation during successful versus unsuccessful stopping [7,8,9,10,11], when comparing short to long stop-signal reaction times [12], and with a parametric increase in stop-signal probability [7,13]. Meta-analyses of functional neuroimaging studies of response inhibition confirm that the striatum is commonly recruited during stopping [14,15,16]. Clinical popula- tions characterized by striatum dysfunction have stopping impairments [13,17,18,19,20]. Finally, striatum lesions cause stopping impairments in rats [21]. Three hypotheses have been put forward regarding the meaning of stopping-related activation of the striatum. First, it may reflect suppression of response-related M1 activation, as striatum activation and M1 deactivation co-occur with successful stopping [7,8]. Second, it may indicate anticipation of a stop-signal occurring, given that striatum activation and response delaying in order to improve stopping performance co-occur with increasing stop-signal probability [7]. Third, it may reflect a slower build-up of the Go process to response threshold, which would allow the Stop process sufficient time to cancel the response [8]. We refer to these concepts as the response suppression, stop- signal anticipation, and response build-up hypotheses, respectively. Here, we investigate the role of the striatum in stopping, testing the hypotheses outlined above with a novel stop-signal paradigm (Fig. 1), in which stop-signal probability was manipulated using a visual cue. This enabled the measurement of response strategy adjustments in anticipation of stop-signals. Furthermore, to constrain waiting strategies that may limit the validity of the stop-signal paradigm [22], subjects were required to make timed rather than speeded responses [23]. We tested the hypotheses outlined above, using fMRI subtraction and psychophysiological interaction (PPI) analyses (Table 1). Specifically, we predict that if PLoS ONE | www.plosone.org 1 November 2010 | Volume 5 | Issue 11 | e13848 Bram Zandbelt, 2017 Technical Note Within-subject variation in BOLD-fMRI signal changes across repeated measurements: Quantification and implications for sample size Bram B. Zandbelt,a,⁎ Thomas E. Gladwin,a Mathijs Raemaekers,c Mariët van Buuren,a Sebastiaan F. Neggers,a René S. Kahn,a Nick F. Ramsey,b and Matthijs Vinka a Rudolf Magnus Institute of Neuroscience, Department of Psychiatry, University Medical Center Utrecht, Utrecht, The Netherlands b Rudolf Magnus Institute of Neuroscience, Department of Neurosurgery, University Medical Center Utrecht, Utrecht, The Netherlands c Helmholtz Institute, Department of Functional Neurobiology, University of Utrecht, Utrecht, The Netherlands Received 5 September 2007; revised 8 February 2008; accepted 14 April 2008 Available online 24 April 2008 Functional magnetic resonance imaging (fMRI) can be used to detect experimental effects on brain activity across measurements. The success of such studies depends on thesize of the experimental effect, the reliability of the measurements, and the number of subjects. Here, we report on the stability of fMRI measurements and provide sample size estimations needed for repeated measurement studies. Stability was quantified in terms of the within-subject standard deviation (σw) of BOLD signal changes across measurements. In contrast to correlation measures of stability, this statistic does not depend on the between-subjects variance in the sampled group. Sample sizes required for repeated measurements of the same subjects were calculated using this σw . Ten healthy subjects performed a motor task on three occasions, separated by one week, while being scanned. In order to exclude training effects on fMRI stability, all subjects were trained extensively on the task. Task performance, spatial activation pattern, and group-wise BOLD signal changes were highly stable over sessions. In contrast, we found substantial fluctuations (up to half the size of the group mean activation level) in individual activation levels, both in ROIs and in voxels. Given this large degree of instability over sessions, and the fact that the amount of within-subject variation plays a crucial role in determining the success of an fMRI study with repeated measurements, improving stability is essential. In order to guide future studies, sample sizes are provided for a range of experimental effects and levels of stability. Obtaining estimates of these latter two variables is essential for selecting an appropriate number of subjects. © 2008 Elsevier Inc. All rights reserved. Keywords: fMRI; Reliability; Within-subject variation; Sample size; Motor Introduction The effect of an intervention, for example pharmacological treatment or repetitive transcranial magnetic stimulation (rTMS), can be investigated with repeated measurements on the same subjects. By administering experimental and control treatment in random order to the same group of subjects, the mean difference between treatment conditions can be calculated and tested for statistical significance. Recently, this type of study (i.e. crossover design) has been applied to functional MRI (fMRI). For instance, fMRI signal changes were observed in the motor cortex of patients recovering from stroke after treatment with fluoxetine (Pariente et al., 2001), in the amygdala following oxytocin administration (Kirsch et al., 2005), and in the prefrontal cortex in response to a catecholamine-O-methyltransferase inhibitor (Apud et al., 2007). The success of such a design depends on statistical power, which in turn depends on (a) the difference between experimental and control treatment, (b) measurement error, and (c) sample size. For single- session fMRI studies, the effect of measurement error on statistical power and sample size has been determined (Desmond and Glover, 2002). These findings may not be valid for fMRI studies with multiple sessions, however, as factors that are stable within a session (e.g. subject position in the scanner) can differ between sessions (Genovese et al., 1997). To obtain an estimate of this between- session measurement error, a test–retest reliability analysis measur- ing the same variable on the same sample of subjects should be performed, in absence of any between-measurement experimental manipulation. A number of studies has investigated the test–retest reliability of fMRI, and reported almost perfect (Aron et al., 2006; Fernandez et al., 2003; Specht et al., 2003) to at best moderate reliability (Raemaekers et al., 2007; Wei et al., 2004). The majority of studies expressed test–retest reliability of fMRI signal changes in terms of www.elsevier.com/locate/ynimg NeuroImage 42 (2008) 196–206 ⁎ Corresponding author. Rudolf Magnus Institute of Neuroscience, University Medical Center Utrecht, Room A.01.126, P.O. Box 85500, NL-3508 GA Utrecht, The Netherlands. Fax: +31 88 7555443. E-mail address: b.b.zandbelt@umcutrecht.nl (B.B. Zandbelt). Available online on ScienceDirect (www.sciencedirect.com). 1053-8119/$ - see front matter © 2008 Elsevier Inc. All rights reserved. doi:10.1016/j.neuroimage.2008.04.183 “© 2010 Zandbelt, Vink. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.” “© 2008 Elsevier Inc. All rights reserved.” Non-Open Access Open Access
  • 9. Open publishing enables you to benefit from transparent peer review Bram Zandbelt, 2017Sources: Dumas-Mallet et al., R Soc Open Sci, 2017; Kowalczuk et al., BMC Open, 2015; © 2017 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited Review History RSOS-160254.R0 (Original submission) Review form: Reviewer 1 (Malcolm Macleod) Is the manuscript scientifically sound in its present form? Yes Are the interpretations and conclusions justified by the results? Yes Is the language acceptable? Yes Is it clear how to access all supporting data? At this stage it is not clear. I would suggest they include details of all publications in a dataset reposited e.g. at FigShare Do you have any ethical concerns with this paper? No Low statistical power in biomedical science: a review of three human research domains Estelle Dumas-Mallet, Katherine S. Button, Thomas Boraud, Francois Gonon and Marcus R. Munafò Article citation details R. Soc. open sci. 4: 160254. http://dx.doi.org/10.1098/rsos.160254 Review timeline Original submission: 12 April 2016 1st revised submission: 1 July 2016 2nd revised submission: 14 October 2016 3rd revised submission: 2 December 2016 Final acceptance: 4 January 2017 Note: Reports are unedited and appear as submitted by the referee. The review history appears in chronological order. on February 7, 2017http://rsos.royalsocietypublishing.org/Downloaded from Some OA journals provide open peer review Open peer review has slightly higher quality than single-blind peer review
  • 10. Bram Zandbelt, 2017 Open publishing can be achieved in multiple ways Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017 1. Open Access journals
  • 11. Bram Zandbelt, 2017 AIMS Neurosci BMC Neurosci BMC Psychol BMC Psychiatry eLife Front Hum Neurosci Front Neurosci Front Psychol Scientific Data Scientific Reports Translational Psychiatry Nat Commun Nat Hum Behav PeerJ PLoS Biol PLoS Comp Biol PLoS ONE R Soc Open Sci eNeuro Open publishing can be achieved in multiple ways 1. Open Access journals Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
  • 12. Bram Zandbelt, 2017 Open publishing can be achieved in multiple ways 2. Hybrid journals Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
  • 13. Bram Zandbelt, 2017 JEP General JEP HPP JEP LMC Psych Rev Psychol Bull Current Biology Neuron* Trends Cogn Sci* Trends Neurosci* Biol Psychiatry Cortex Curr Opin Behav Sci Curr Opin Neurosci Curr Opin Psychol Eur Neuropsychopharmacol Neuroimage Neuropsychologia J Cogn Neurosci Neuropsychopharmacol Mol Psychiatry Proc Natl Acad Sci Brain Cereb Cortex Soc Cogn Affect Neurosci Phil Trans R Soc B J Neurosci Att Perecpt Psychophys Brain Struct Func Cognitive Affect Behavior Neurosci Exp Brain Res Psychopharmacol Eur J Neurosci Hum Brain Mapp Open publishing can be achieved in multiple ways 2. Hybrid journals Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
  • 14. Bram Zandbelt, 2017 Open publishing can be achieved in multiple ways 3. Self-archiving Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
  • 15. Bram Zandbelt, 2017 Science AIMS Neurosci JAMA Psychiatry Ann Rev Neurosci Ann Rev Psychol J Neurophysiol JEP General JEP HPP JEP LMC Psych Rev Psychol Bull Am J Psychiatry BMC Neurosci BMC Psychol BMC Psychiatry Current Biology Neuron Trends Cogn Sci Trends Neurosci eLife Biol Psychiatry Cortex Curr Opin Behav Sci Curr Opin Neurosci Curr Opin Psychol Eur Neuropsychopharmacol Neuroimage Neuropsychologia Front Hum Neurosci Front Neurosci Front Psychol N Engl J Med J Cogn Neurosci Nat Rev Neurosci Neuropsychopharmacol Scientific Data Scientific Reports Translational Psychiatry Mol Psychiatry Nature Nat Commun Nat Hum Behav Nat Neurosci Proc Natl Acad Sci Brain Cereb Cortex Soc Cogn Affect Neurosci PeerJ PLoS Biol PLoS Comp Biol PLoS ONE Phil Trans R Soc B R Soc Open Sci eNeuro J Neurosci Eur J Neurosci Hum Brain Mapp Att Perecpt Psychophys Brain Struct Func Cognitive Affect Behavior Neurosci Exp Brain Res Psychopharmacol Open publishing can be achieved in multiple ways none allowed preprint only pre- & postprint all allowed pub PDF ✘ ✘ ✘ ✔ postprint ✘ ✘ ✔ ✔ preprint ✘ ✔ ✔ ✔ 3. Self-archiving Source: https://http://www.sherpa.ac.uk/romeo/ data retrieved on Jan 20, 2017
  • 16. Open publishing can be low-cost and even free of charge 1. Free of charge R Soc Open Sci Bram Zandbelt, 2017 Judgm Decis Mak 2. Free of charge in NL Att Perecpt Psychophys Brain Struct Func Cognitive Affect Behavior Neurosci Psychon Bull Rev Psychopharmacol Cogn Sci Eur J Neurosci Hum Brain Mapp Psychophysiol Topics Cogn Sci
  • 17. Open publishing can be low-cost and even free of charge 3. Low-cost Bram Zandbelt, 2017 PeerJ ($399-499, lifetime) RIO Journal (€50-650) Glossa (£300) J Open Psychol Data (£100) J Open Res Software (£100) Cogent Biology (pay what you can) Cogent Psychology (pay what you can) Collabra: Psychology ($875) F1000 Research ($1000) SAGE Open ($395)
  • 18. Bram Zandbelt, 2017 Publishing Funding CareerCode & data sharing
  • 19. Practicing open science provides you with new funding opportunities Individual fellowships Open science awards Replication awards and grants Preregistration awards Travel grant Bram Zandbelt, 2017Sources: McKiernan et al., eLife, 2016;
  • 20. Publication policies Data archiving policies Gold OA Green OA Funder Whether Where Whether What When Where Whether What When Where NWO (NL) Required OA/ hybrid Encouraged Pub. PDF or postprint a.s.a.p. Any repository Encouraged - - - Welcome Trust (UK) Required OA/ hybrid Required Pub. PDF or postprint < 6 mo. after publication Europe PMC or PMC Required Data At publication - EC Horizon 2020 (EU) Encouraged OA/ hybrid Required Pub. PDF or postprint < 12 mo. after publication Any repository Encouraged Data and code a.s.a.p. Any repository ERC (EU) Encouraged - Encouraged Pub. PDF or postprint a.s.a.p. Any repository Encouraged Data and code < 6 mo. after publication Any repository NIH (US) - - Required Pub. PDF or postprint Required Data a.s.a.p. Any repository Practicing open science enables you to comply with funder mandates Sources: https://http://www.sherpa.ac.uk/romeo/; data retrieved on Jan 20, 2017 Bram Zandbelt, 2017
  • 21. Practicing open science enables you to comply with funder mandates Bram Zandbelt, 2017Sources: McKiernan et al., eLife, 2016;
  • 22. Bram Zandbelt, 2017 Publishing Funding CareerCode & data sharing
  • 23. Code and data sharing facilitates reuse and responding to requests Can I have a copy of your data?I am not sure where my data is Sources: Hanson, Surkis, Yacobucci, NYU Health Sciences Libraries, 2012; https://bit.ly/data_management_snafu Bram Zandbelt, 2017
  • 24. Code and data sharing promotes good research practices and reduces errors Version control Documentation Code review unit testing File organization Fewer reporting errors in OA papers Bram Zandbelt, 2017Sources: Wicherts et al., PLoS ONE, 2011 Good research practices
  • 25. Code and data sharing comes with increased visibility Papers with open code get more citations Papers with open data get more citations Bram Zandbelt, 2017Sources: Vandewalle, Comput Sci Eng, 2012; Piwowar & Vision, PeerJ, 2013.
  • 26. Code and data sharing is beginning to be acknowledged Bram Zandbelt, 2017Sources: https://osf.io/tvyxzl; Kidwell et al., PLoS Biol, 2016;
  • 27. Code and data sharing helps you increase your research output Standalone code/data Data papers Bram Zandbelt, 2017 Software papers
  • 28. Bram Zandbelt, 2017 Publishing Funding CareerCode & data sharing
  • 29. Practicing open science provides opportunities for scientific collaboration Bram Zandbelt, 2017
  • 30. RESEARCH ARTICLE SUMMARY ◥ PSYCHOLOGY Estimating the reproducibility of psychological science Open Science Collaboration* INTRODUCTION: Reproducibility is a defin- ing feature of science, but the extent to which it characterizes current research is unknown. Scientific claims should not gain credence because of the status or authority of their originator but by the replicability of their supporting evidence. Even research of exem- plary quality may have irreproducible empir- ical findings because of random or systematic error. RATIONALE: There is concern about the rate and predictors of reproducibility, but limited evidence. Potentially problematic practices in- clude selective reporting, selective analysis, and insufficient specification of the conditions nec- essary or sufficient to obtain the results. Direct replication is the attempt to recreate the con- ditions believed sufficient for obtaining a pre- viously observed finding and is the means of establishing reproducibility of a finding with new data. We conducted a large-scale, collab- orative effort to obtain an initial estimate of the reproducibility of psychological science. RESULTS: We conducted replications of 100 experimental and correlational studies pub- lished in three psychology journals using high- powered designs and original materials when available. There is no single standard for eval- uating replication success. Here, we evaluated reproducibility using significance and P values, effect sizes, subjective assessments of replica- tion teams, and meta-analysis of effect sizes. The mean effect size (r) of the replication ef- fects (Mr = 0.197, SD = 0.257) was half the mag- nitude of the mean effect size of the original effects (Mr = 0.403, SD = 0.188), representing a substantial decline. Ninety-sevenpercent of orig- inal studies had significant results (P < .05). Thirty-six percent of replications had signifi- cant results; 47% of origi- nal effect sizes were in the 95% confidence interval of the replication effect size; 39% of effects were subjectively rated to have replicated the original re- sult; and if no bias in original results is as- sumed, combining original and replication results left 68% with statistically significant effects. Correlational tests suggest that repli- cation success was better predicted by the strength of original evidence than by charac- teristics of the original and replication teams. CONCLUSION: No single indicator sufficient- ly describes replication success, and the five indicators examined here are not the only ways to evaluate reproducibility. Nonetheless, collectively these results offer a clear conclu- sion: A large portion of replications produced weaker evidence for the original findings de- spite using materials provided by the original authors, review in advance for methodologi- cal fidelity, and high statistical power to detect the original effect sizes. Moreover, correlational evidence is consistent with the conclusion that variation in the strength of initial evidence (such as original P value) was more predictive of replication success than variation in the characteristics of the teams conducting the research (such as experience and expertise). The latter factors certainly can influence rep- lication success, but they did not appear to do so here. Reproducibility is not well understood be- cause the incentives for individual scientists prioritize novelty over replication. Innova- tion is the engine of discovery and is vital for a productive, effective scientific enterprise. However, innovative ideas become old news fast. Journal reviewers and editors may dis- miss a new test of a published idea as un- original. The claim that “we already know this” belies the uncertainty of scientific evidence. Innovation points out paths that are possible; replication points out paths that are likely; progress relies on both. Replication can in- crease certainty when findings are reproduced and promote innovation when they are not. This project provides accumulating evidence for many findings in psychological research and suggests that there is still more work to do to verify whether we know what we think we know. ▪ RESEARCH SCIENCE sciencemag.org 28 AUGUST 2015 • VOL 349 ISSUE 6251 943 The list of author affiliations is available in the full article online. *Corresponding author. E-mail: nosek@virginia.edu Cite this article as Open Science Collaboration, Science 349, aac4716 (2015). DOI: 10.1126/science.aac4716 Original study effect size versus replication effect size (correlation coefficients). Diagonal line represents replication effect size equal to original effect size. Dotted line represents replication effect size of 0. Points below the dotted line were effects in the opposite direction of the original. Density plots are separated by significant (blue) and nonsignificant (red) effects. ON OUR WEB SITE ◥ Read the full article at http://dx.doi. org/10.1126/ science.aac4716 .................................................. onMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016DownloadedfromonMarch7,2016Downloadedfrom Bram Zandbelt, 2017 Practicing open science provides opportunities for scientific collaboration
  • 31. Bram Zandbelt, 2017 Practicing open science provides opportunities for scientific collaboration
  • 32. Practicing open science enables you to contribute to open source projects Bram Zandbelt, 2017 776 contributors 116 contributors 71 contributors 257 contributors 702 contributors 552 contributors 49 contributors
  • 33. Practicing open science is increasingly valued and mandated by institutions Source: https://www.academictransfer.com; http://www.nicebread.de/open-science-hiring-practices/ Bram Zandbelt, 2017
  • 34. Take home message: Open science has many benefits for individual researchers Bram Zandbelt, 2017 Open publishing … comes with greater visibility … lets you retain author rights and control reuse of materials … enables you to benefit from transparent peer review … can be achieved in many ways … can be low-cost and even free of charge Practicing open science … provides you with new funding opportunities … enables you to comply with funder mandates Practicing open science … provides new opportunities for scientific collaboration … is increasingly valued and mandated by institutions Code and data sharing … facilitates reuse and responding to requests … promotes good research practices and reduces errors … is beginning to be acknowledged … comes with greater visibility … helps you increase your research output
  • 35. … and we haven’t even talked about the benefits of preregistration :-) Sources: Wagenmakers & Dutilh (2016). APS Observer. Bram Zandbelt, 2017
  • 37. Bram Zandbelt, 2017 Now, let’s learn about your views 1. Engaging in open science will boost my career 2. Engaging in open science will accelerate my research 3. Engaging in open science will improve the quality of my research Proponent Opponent vs. Proponent Opponent vs. Proponent Opponent vs. Three debates