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BioMedical Image
Processing
Dr Haris Masood
2
Information
 Lecturer: Dr. Haris Masood
 Consultation Hours: ??
 E-mail: haris.masood@wecuw.edu.pk
3
Course Info
 Textbook
R. C. Gonzalez and R. E. Woods, DIGITAL IMAGE
PROCESSING, 2nd edition, Prentice Hall, 2002
 Reference
R. C. Gonzalez and R. E. Woods, DIGITAL IMAGE
PROCESSING with MATLAB , Prentice Hall,
Anil K. Jain, FUNDAMENTALS OF DIGITAL IMAGE
PROCESSING, Prentice Hall
4
Assessment
Quizzes: 10%
Assignment/ Class Projects: 10%
Project: 10%
Mid: 30%
Final test: 50%
5
DIP?
 Image processing is a subclass of signal
processing concerned specifically with
pictures.
Improve image quality for human perception
and/or computer interpretation
6
DIP?
 The Field of DIP refers to processing of digital
images by means of Digital computers
 Two principal application
 Improvement of pictorial info. For human interpretation
 Processing of image data for
 Storage
 Transmission
 Representation for autonomous machine perception
7
Historical Developments of DIP
 1920’s: Analog image transmission
Transatlantic picture transmission
London – New York
 1960’s: Space program
Invention of digital computer
hardware and software
Source data is very expensive
 1970’s: X-ray imaging (CT)
 Nowadays: Cheap computing
Lots of DIP applications
8
Scope
 Computer vision aims to duplicate the effect of
human vision by electronically perceiving and
understanding an image.
 Not an easy task
 Three dimensional (3D) world,
 available visual sensors (e.g., TV cameras) usually give
two dimensional (2D) images
 this projection to a lower number of dimensions incurs an
enormous loss of information.
10
Several fields deal with images
 Computer Graphics : the creation of images.
 Image Processing : the enhancement or
other manipulation of the image
the result of which is usually another images.
 Computer Vision: the analysis of image
contents
11
Typical DIP system
 Digital Image Processing is processing of two-
dimensional data by a digital computer
12
Digital Image
 Image
 Two-dimensional function f(x,y)
 x, y : spatial coordinates
 Value of f : intensity or gray level
 A set of pixels
 Pixel means
 pixel coordinates/location
 pixel value
 or both
 Both coordinates and value are discrete
13
Example
e.g. 640 x 480 8-bit image
14
Examples of Fields that use DIP
 Categorize by image sources
 Radiation from the Electromagnetic spectrum
Acoustic
 Ultrasonic
 Subsonic
Electronic (in the form of electron beams used in
electron microscopy)
Computer (synthetic images used for modeling and
visualization
15
EM spectrum
 EM waves = a stream of mass-less (proton)
particles, each traveling in a wavelike pattern and
moving at the speed of light.
 Spectral bands are grouped by energy per photon
 Gamma rays, X-rays, Ultraviolet, Visible, Infrared,
Microwaves, Radio waves
16
Gamma-Ray Imaging
 Nuclear medicine
Bone Scan
PET Scan (Positron emission
tomography) image
 Astronomical observation
Cygnus Loop
 Nuclear Reaction
shows an image of Gamma
radiation from a reactor valve
17
X-ray Imaging
 Medical Diagnosis
chest X-ray (familiar)
aortic angiogram
head Computerized Axial
Tomography (CAT)
 Astronomy
Cygnus Loop
 Industrial Applications
Circuit board
18
UV Band Imaging
 Lithography
 Industrial inspection
 Microscopy (fluorescence)
Normal corn
Smut corn
 Lasers
Biological imaging
Astronomical observations
Cygnus Loop
19
Visible& infrared Imaging
 Medical microscopy
Anticancer medicine(250x)
Cholesterol (40x)
 Industrial applications
Microprocessor (60x)
Nickel oxide film (600x)
Surface of audio CD (1750x)
Organic superconductor(450x)
20
Imaging in Microwave Band
 Imaging radar : the only way
to explore inaccessible
regions of the Earth’s surface
Radar image of mountains in
southeast Tibet
Note the clarity and detail of the
image, unencumbered by
clouds or other atmospheric
conditions that normally
interfere with images in the
visual band
21
Imaging in Radio Band
 Medicine
Magnetic resonance
image (MRI) : 2D
picture of a section of
the patient (any plane)
 knee
 spine
 Astronomy
22
Acoustic Imaging
 Geological applications use
sound in the low end of the
sound spectrum (hundred of
Hz)
Mineral and oil exploration
 Cross-sectional image of a
seismic model
23
Ultrasound images
 Transmit ultrasound (1 to
5MHz)
 Sound pulses are
reflected from tissues
 Compute the distance
using the speed
 Display the distances and
intensities of the echoes
24
3 types of computerized
process
 Low-level : input, output are images
 Primitive operations such as image preprocessing to reduce
noise, contrast enhancement, and image sharpening
 Mid-level : inputs may be images, outputs are attributes
extracted from those images
 Segmentation
 Description of objects
 Classification of individual objects
 High-level :
 Image analysis
 Image Understanding
25
Computational Complexity of DIP
 HDTV quality video
 Resolution : 1024 x 768
 786,432 pixels
 Refresh rate : 30 pictures/s
 Compute average gray level of each picture
 786,432 x 30 = about 23 million additions/s
 Digital video processing had not been possible for a
long time
26
Components of DIP System
27
Sampling and Quantization
28
Sampling and Quantization
 Sampling
Digitization in Spatial
Domain
29
Sampling and Quantization
 Quantization
Digitization of pixel levels
30
Image Enhancement
 To bring out detail, which is
obscured, or simply to
highlight certain features of
interest in an image.
 To accentuate certain image
features for subsequent
analysis or for image display
Subjective process
g(x,y) = 255 – f(x,y)
31
Image Enhancement
32
Image Restoration
 To remove or minimize
known/unknown
degradations in image
33
Image Restoration
34
Color Image Processing
35
Image Compression
 Objective
To reduce the amount
of data to represent
images
From the bit stream,
the approximate copy
of
the original image can
be reproduced
36
Image Compression
 JPEG compression
1000 x 1000 RGB picture = 3 MB
16 MB memory card can store only 5 pictures
With JPEG, the same card can store more than 80
pictures
37
Image Compression
 Video compression
 HDTV quality video
 1024 x 768 x 3 x 30 x 8 = 566 Mbits/s (Mbps)
 Video compression standards
 MPEG-1: Video-CD, 1-2 Mbps
 MPEG-2: HDTV and DVD, 2-15 Mbps
 H.263: Low bit-rate applications,
10-2048 Kbps
 MPEG-4: similar to H.263
 H.264/AVC : new video coding standard
38
Image Compression
 Mobile video transmission
Compression ratio = 158 : 1
39
Image Segmentation
 Edge detection
40
Image Segmentation
Original Segmented
41
Image Segmentation
 Image Segmented by
local Thresholding
42
Image Description
 Objective
interpret or describe
the meaning
contained in image
 Output is not image
43
Reading Assignment
 Chapter 1
44
Sampling and Quantization
 Computers cannot process
parameters/functions that vary in a continuum
 We have to discretize:
x, y => xi , yj where (i = 0; : : : ;N 1; j = 0; : : : ;M ¡
1): Sampling
f(x, y) =>F(xi , yj)
Quantization
45
Sampling
 Obtain sampling by utilizing f (x, y) x comb(x, y)
46
Sampling and Quantization
47
Sampling and Quantization
 Sampling
Digitization in Spatial
Domain
48
Objectives ( C_1)
 To define the scope of DIP
 To give historical perspective of the origins of this
field
 To give an Idea of the stat of the art in DIP by
examining some of the principal areas in which this
field is applied
 To give an overview of the components contained in
a typical DIP system

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Chapter1.ppt

  • 2. 2 Information  Lecturer: Dr. Haris Masood  Consultation Hours: ??  E-mail: haris.masood@wecuw.edu.pk
  • 3. 3 Course Info  Textbook R. C. Gonzalez and R. E. Woods, DIGITAL IMAGE PROCESSING, 2nd edition, Prentice Hall, 2002  Reference R. C. Gonzalez and R. E. Woods, DIGITAL IMAGE PROCESSING with MATLAB , Prentice Hall, Anil K. Jain, FUNDAMENTALS OF DIGITAL IMAGE PROCESSING, Prentice Hall
  • 4. 4 Assessment Quizzes: 10% Assignment/ Class Projects: 10% Project: 10% Mid: 30% Final test: 50%
  • 5. 5 DIP?  Image processing is a subclass of signal processing concerned specifically with pictures. Improve image quality for human perception and/or computer interpretation
  • 6. 6 DIP?  The Field of DIP refers to processing of digital images by means of Digital computers  Two principal application  Improvement of pictorial info. For human interpretation  Processing of image data for  Storage  Transmission  Representation for autonomous machine perception
  • 7. 7 Historical Developments of DIP  1920’s: Analog image transmission Transatlantic picture transmission London – New York  1960’s: Space program Invention of digital computer hardware and software Source data is very expensive  1970’s: X-ray imaging (CT)  Nowadays: Cheap computing Lots of DIP applications
  • 8. 8 Scope  Computer vision aims to duplicate the effect of human vision by electronically perceiving and understanding an image.  Not an easy task  Three dimensional (3D) world,  available visual sensors (e.g., TV cameras) usually give two dimensional (2D) images  this projection to a lower number of dimensions incurs an enormous loss of information.
  • 9. 10 Several fields deal with images  Computer Graphics : the creation of images.  Image Processing : the enhancement or other manipulation of the image the result of which is usually another images.  Computer Vision: the analysis of image contents
  • 10. 11 Typical DIP system  Digital Image Processing is processing of two- dimensional data by a digital computer
  • 11. 12 Digital Image  Image  Two-dimensional function f(x,y)  x, y : spatial coordinates  Value of f : intensity or gray level  A set of pixels  Pixel means  pixel coordinates/location  pixel value  or both  Both coordinates and value are discrete
  • 12. 13 Example e.g. 640 x 480 8-bit image
  • 13. 14 Examples of Fields that use DIP  Categorize by image sources  Radiation from the Electromagnetic spectrum Acoustic  Ultrasonic  Subsonic Electronic (in the form of electron beams used in electron microscopy) Computer (synthetic images used for modeling and visualization
  • 14. 15 EM spectrum  EM waves = a stream of mass-less (proton) particles, each traveling in a wavelike pattern and moving at the speed of light.  Spectral bands are grouped by energy per photon  Gamma rays, X-rays, Ultraviolet, Visible, Infrared, Microwaves, Radio waves
  • 15. 16 Gamma-Ray Imaging  Nuclear medicine Bone Scan PET Scan (Positron emission tomography) image  Astronomical observation Cygnus Loop  Nuclear Reaction shows an image of Gamma radiation from a reactor valve
  • 16. 17 X-ray Imaging  Medical Diagnosis chest X-ray (familiar) aortic angiogram head Computerized Axial Tomography (CAT)  Astronomy Cygnus Loop  Industrial Applications Circuit board
  • 17. 18 UV Band Imaging  Lithography  Industrial inspection  Microscopy (fluorescence) Normal corn Smut corn  Lasers Biological imaging Astronomical observations Cygnus Loop
  • 18. 19 Visible& infrared Imaging  Medical microscopy Anticancer medicine(250x) Cholesterol (40x)  Industrial applications Microprocessor (60x) Nickel oxide film (600x) Surface of audio CD (1750x) Organic superconductor(450x)
  • 19. 20 Imaging in Microwave Band  Imaging radar : the only way to explore inaccessible regions of the Earth’s surface Radar image of mountains in southeast Tibet Note the clarity and detail of the image, unencumbered by clouds or other atmospheric conditions that normally interfere with images in the visual band
  • 20. 21 Imaging in Radio Band  Medicine Magnetic resonance image (MRI) : 2D picture of a section of the patient (any plane)  knee  spine  Astronomy
  • 21. 22 Acoustic Imaging  Geological applications use sound in the low end of the sound spectrum (hundred of Hz) Mineral and oil exploration  Cross-sectional image of a seismic model
  • 22. 23 Ultrasound images  Transmit ultrasound (1 to 5MHz)  Sound pulses are reflected from tissues  Compute the distance using the speed  Display the distances and intensities of the echoes
  • 23. 24 3 types of computerized process  Low-level : input, output are images  Primitive operations such as image preprocessing to reduce noise, contrast enhancement, and image sharpening  Mid-level : inputs may be images, outputs are attributes extracted from those images  Segmentation  Description of objects  Classification of individual objects  High-level :  Image analysis  Image Understanding
  • 24. 25 Computational Complexity of DIP  HDTV quality video  Resolution : 1024 x 768  786,432 pixels  Refresh rate : 30 pictures/s  Compute average gray level of each picture  786,432 x 30 = about 23 million additions/s  Digital video processing had not been possible for a long time
  • 27. 28 Sampling and Quantization  Sampling Digitization in Spatial Domain
  • 28. 29 Sampling and Quantization  Quantization Digitization of pixel levels
  • 29. 30 Image Enhancement  To bring out detail, which is obscured, or simply to highlight certain features of interest in an image.  To accentuate certain image features for subsequent analysis or for image display Subjective process g(x,y) = 255 – f(x,y)
  • 31. 32 Image Restoration  To remove or minimize known/unknown degradations in image
  • 34. 35 Image Compression  Objective To reduce the amount of data to represent images From the bit stream, the approximate copy of the original image can be reproduced
  • 35. 36 Image Compression  JPEG compression 1000 x 1000 RGB picture = 3 MB 16 MB memory card can store only 5 pictures With JPEG, the same card can store more than 80 pictures
  • 36. 37 Image Compression  Video compression  HDTV quality video  1024 x 768 x 3 x 30 x 8 = 566 Mbits/s (Mbps)  Video compression standards  MPEG-1: Video-CD, 1-2 Mbps  MPEG-2: HDTV and DVD, 2-15 Mbps  H.263: Low bit-rate applications, 10-2048 Kbps  MPEG-4: similar to H.263  H.264/AVC : new video coding standard
  • 37. 38 Image Compression  Mobile video transmission Compression ratio = 158 : 1
  • 40. 41 Image Segmentation  Image Segmented by local Thresholding
  • 41. 42 Image Description  Objective interpret or describe the meaning contained in image  Output is not image
  • 43. 44 Sampling and Quantization  Computers cannot process parameters/functions that vary in a continuum  We have to discretize: x, y => xi , yj where (i = 0; : : : ;N 1; j = 0; : : : ;M ¡ 1): Sampling f(x, y) =>F(xi , yj) Quantization
  • 44. 45 Sampling  Obtain sampling by utilizing f (x, y) x comb(x, y)
  • 46. 47 Sampling and Quantization  Sampling Digitization in Spatial Domain
  • 47. 48 Objectives ( C_1)  To define the scope of DIP  To give historical perspective of the origins of this field  To give an Idea of the stat of the art in DIP by examining some of the principal areas in which this field is applied  To give an overview of the components contained in a typical DIP system