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Surveillance and
Animal health
monitoring - Early
detection of diseases
Shuaib T Muhammed
shuaib@naqua.com.sa
Animal Health
Animals
PathogenEnvironment
Disease outbreak is often
the result of an equation
of three components, the
animal, the pathogen
and the environment
Health of
DISEASE
Condition of presence of
Primary and secondary pathogens
• A primary pathogen is a virus, bacteria, fungi,
that cause disease by themselves.
• Secondary are those only can cause disease
when there is a primary cause such as
physiological/environmental condition or a
primary pathogen.
WSSV outbreaks
• Consecutive massive mortality due to WSSV outbreaks
• Peneaus indicus - highly susceptible to WSSV
• WSSV became endemic in KSA ( wild crustacean were also
tested WSSV positive)
• The industry was unable to produce shrimp reliably.
• Led to introduction of SPF Penaeus vannamei from Ecuador
0
5000
10000
15000
20000
25000
2010 2011 2012 2013
Production
Year
Production loss due to WSSV in KSA (Penaeus indicus )
• Early detection of primary endemic diseases to minimize their
economic impact.
• Detection of exotic pathogens which are emerging or posses
higher risk like AHPND, EHP etc;
Surveillance program
Animal Health monitoring
• Early detection of diseases caused by secondary
pathogen and deviation from optimum productivity
Health Management Tools
Surveillance
• PCR
• Histology
Animal Health monitoring
• Culture parameters
• Macroscopic observations
• Wet mounts
Pathogens covered in the surveillance
• Primary endemic
pathogens
– WSSV
– TSV
– BP
Frequency of sampling is
based on :
1. Economic impact of
disease
2. Type of rearing
conditions (indoor or
outdoor)
3. Weather conditions as
low temperature posses
a risk factor for WSSV.
• Exotic pathogens
– AHPND
– IHHNV
– IMNV
– TSV
– YHV
– NHP
– CMNV
– EHP
– MBV and
– HPV
SPF status monitoring
• SPF status monitoring for Penaeus vannamei
* To remove IHHNV insertions from the stock.
Process Target sample Target
pathogen
Frequency Diagnostic
method
Broodstock :
SPF program
Broodstock
after spawning
IHHNV* 100% PCR
All 100% Histology
Juveniles (cold
challenge)
WSSV, IHHNV,
BP, NHP, MBV,
HPV, AHPND,
EHP, TSV, IMNV,
YHV, CMNV
Once per batch
(150 animals)
PCR
All Once per batch Histology
Broodstock and PL surveillance
Process Target sample Target
pathogen
Frequency Diagnostic
method
Broodstock Routine All Fortnightly AHM & wet mount
and histology
Clinical signs All N/A Histology
Broodstock for maturation 100% All Individual selection AHM
Broodstock @ maturation Standard
mortalities
WSSV 100% PCR
Clinical signs All N/A Histology
Artemia biomass Routine WSSV, IHHNV,
AHPND, EHP
Every batch PCR
Larval production Routine All Weekly AHM & wet mount
Routine (cold
challenge)
WSSV 100% PCR
Algae and
artemia
Vibrios (green
colonies – TCBS)
weekly Microbiology
Nurseries and Grow out ponds
Process Culture
period
Target
sample
Target
pathogen
frequency Diagnostic
method
Nursery and
Grow out
ponds
Summer
Routine
(cold
challenge*)
WSSV 100% (before
transfer)
PCR
All Monthly AHM & wet
mount**
Clinical
signs
WSSV N/A Rapid field test/PCR
All N/A AHM & wet mount
AHPND HP tubular
constriction
PCR
All N/A Histology
* Cold challenge is only for nursery juveniles (in summer)
**During winter culture all the nurseries and grow out ponds are monitored fortnightly
Wild crustacean
Location Animal stage Target sample
Target
pathogen
Frequency Diganostic method
Zooplankton Routine WSSV Monthly PCR
Shrimps/crabs Routine WSSV Monthly PCR
Wild crustacean (farms,canals,
intakes)
Location Target sample Target
pathogen
Frequency Diagnostic
method
Main feeder
canals, sub
feeder canals
and intakes
Crabs, shrimps
and
zooplankton
WSV and
TSV (only
shrimp)
Monthly
(summer)
Fortnightly
(winter)
PCR
Local fish
markets
Shrimps from
different
countries
WSSV, TSV,
IHHNV, NHP,
ANPND, EHP,
MBV and HPV
Monthly PCR
Local fishing
boat (wild
catch)
Shrimps WSSV, TSV,
AHPND, EHP
Monthly PCRCrab WSSV
Filter feeder TSV, AHPND
Trainings and Simulation
• Regular trainings on animal health monitoring
and sample preparation to production team
• Simulation exercise every year per production
units
Prevalence table
Target sampling is essential!!
Very crucial part of analysis
Weak animals are the best sample
Wrong samples = wrong information = wrong
decisions
Lethargic/Symptomatic animals : Near Pond dike/Check trays
Easy way to find weak animals from a
suspect ponds
Animal Health Monitoring Process Flow
Surveillance Program
Production data
(performance, water
and soil quality)
Animal Health
Monitoring Program
Batches with abnormalities/poor performance MUST be prioritized
Indication of health status in a pond!!
Animal Health Macroscopic Observations –
Nurseries and GO
Bird activity Best indication of abnormalities in the pond
Animal Health Macroscopic Observations –
Nurseries and GO
Pond
Normal Normal
Animal Health Macroscopic Observations –
Nurseries and GO
Pond : abnormal
Plankton blooms & inadequate pond preparation
Possible causes
• Inadequate pond preparation
• Inlet filtration problems
Possible problems
• Increased FCR
• Predation (PL)
• Risk of microsporidia infection
• Attracts birds
Mitigation measures
• Proper pond preparation
• Application of Tea seed powder
• Proper usage of bag nets
Presence of crabs/Snails/fishes in culture ponds
Fish + PL happa trial results
Affect of fish population in survival of P. vannamei during the early stage
Duration of the trial : 24 hours
H1: 200 PL +5 Fish
(with feeding)
Survival:24%
H2: 200 PL +5 Fish
(no feeding)
Survival:10%
H3: 200 PL +no Fish
(with feeding)
Survival:93%
Data obtained from NAQUA farms
Animal Health Macroscopic Observations
Possible causes
• Disease reasons like WSSV
Mitigation measures
• Increase frequency of monitoring
• Contingency if infection
Body coloration
Animal Health Macroscopic Observations
Normal Abnormal
Possible causes
• Viral, Bacterial
infection
• Microsporidia
infection
Animal Health Macroscopic Observations
Shell
Normal Loose shell
Possible causes
• Disease reasons (HP bacterial infection)
• Nutritional (under fed) & Wrong
population estimation
• Poor pond bottom water quality
Mitigation measures
• Recalculate feeding
• Improve pond bottom water quality
• Routine animal health monitoring
Animal Health Macroscopic Observations
Spots on carapace (no diagnostic value)
Possible causes
• WSSV
• Bacterial spots (probiotic)
• Water hardness
Animal Health Macroscopic Observations
Gill color
Brown gillsNormal Black gills Melanization
Conduct aquarium test to find out if it is due to pond bottom or melanization often related to a
bacterial infection
Possible causes
• Poor pond bottom (more
algae/organic load)
• Excess feeding
• Algal bloom
• Bacterial infection
Possible problems
• Open doors to health problems
Mitigation measures
• Water exchange
• Application of lime (small ponds)
Animal Health Macroscopic Observations
Tail Muscle
Normal
Probable causes
• Muscle microsporidian infection
• Bacterial infection
• IMNV
• Muscle cramp
Abnormal
Animal Health Macroscopic Observations
Necrosis/melanization
Probable causes
• Bacterial infection
• Chitinolytic/Chitinoblastic activity of
Vibrio parahaemolyticus
Mitigation measures
• Application of molasses
• Improve water quality
Uropod reddishness/damage
Grade 1 Grade 2 Grade 3 Grade 4
• Quality of the water
• Bacterial infection?
Animal Health Macroscopic Observations
Hemolymph clotting test
Animal Health Macroscopic Observations
Hemolymph clotting time:
 ~1 to 1.5 min – normal
 ~1.5 to 2 min – abnormal
(vibriosis, TS, WSD, stress)
Hepatopancreas size
Probable causes
• Hp bacterial infection
• Early mortality syndrome EMS
• Poor feeding?
Animal Health Macroscopic Observations
Gill fouling
Probable causes
• Poor water quality
• Poor pond bottom
(dead algae/organic load
• Algal bloom
Possible problems
• Open doors to pathogens
• Toxicity
• Bacterial infection
Mitigation measures
• Water exchange
• Application of lime to thin
plankton population
Zoothamnium sp
Leucothrix sp
Animal Health Microscopic Observations
Melanization
Normal
HP lipid vacuolization
Probable causes
• inadequate feeding
• Disease reasons
Risk mitigation
• Recalculate feeding
• Routine animal health monitoring
High lipids Low lipids
Animal Health Microscopic Observations
HP tubular constriction & Melanization
• First sign of toxic effects possibly blue
green algae/ NHP / AHPND / Vibriosis
Animal Health Microscopic Observations
Animal Health Microscopic Observations
Gut content analysis
• Reduced growth
• High FCR
• Mollusc is an
intermediate host of
gregarines
• Garlic in feed for
every two weeks
(gregarines)
• Egg/Nauplii washing
is effective for BP
and MBV
When to increase monitoring??
• Temperature fluctuation? And low temperature
• After heavy rain
• If there is any disease in farm or neighboring farm
Remember!!!!
• Do not ignore clinical signs!
• Can be very expensive because losing opportunity to early
detection and control
• Could lead to disease outbreaks
20590.6
10466.9
4932
652.9
12980
22350
29055
0
5000
10000
15000
20000
25000
30000
35000
2010 2011 2012 2013 2014 2015 2016
Production
year
WSSV
P. indicus P. vannamei
P indicus vs P vannamei production comparison
KSA back in shrimp production!
Thank you for your attention!

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Presentation 1.8 Surveillance and animal health monitoring, early detection of diseases (Mr Shuaib T. Muhammad)

  • 1. Surveillance and Animal health monitoring - Early detection of diseases Shuaib T Muhammed shuaib@naqua.com.sa
  • 2. Animal Health Animals PathogenEnvironment Disease outbreak is often the result of an equation of three components, the animal, the pathogen and the environment Health of DISEASE Condition of presence of
  • 3. Primary and secondary pathogens • A primary pathogen is a virus, bacteria, fungi, that cause disease by themselves. • Secondary are those only can cause disease when there is a primary cause such as physiological/environmental condition or a primary pathogen.
  • 4. WSSV outbreaks • Consecutive massive mortality due to WSSV outbreaks • Peneaus indicus - highly susceptible to WSSV • WSSV became endemic in KSA ( wild crustacean were also tested WSSV positive) • The industry was unable to produce shrimp reliably. • Led to introduction of SPF Penaeus vannamei from Ecuador 0 5000 10000 15000 20000 25000 2010 2011 2012 2013 Production Year Production loss due to WSSV in KSA (Penaeus indicus )
  • 5. • Early detection of primary endemic diseases to minimize their economic impact. • Detection of exotic pathogens which are emerging or posses higher risk like AHPND, EHP etc; Surveillance program Animal Health monitoring • Early detection of diseases caused by secondary pathogen and deviation from optimum productivity
  • 6. Health Management Tools Surveillance • PCR • Histology Animal Health monitoring • Culture parameters • Macroscopic observations • Wet mounts
  • 7. Pathogens covered in the surveillance • Primary endemic pathogens – WSSV – TSV – BP Frequency of sampling is based on : 1. Economic impact of disease 2. Type of rearing conditions (indoor or outdoor) 3. Weather conditions as low temperature posses a risk factor for WSSV. • Exotic pathogens – AHPND – IHHNV – IMNV – TSV – YHV – NHP – CMNV – EHP – MBV and – HPV
  • 8. SPF status monitoring • SPF status monitoring for Penaeus vannamei * To remove IHHNV insertions from the stock. Process Target sample Target pathogen Frequency Diagnostic method Broodstock : SPF program Broodstock after spawning IHHNV* 100% PCR All 100% Histology Juveniles (cold challenge) WSSV, IHHNV, BP, NHP, MBV, HPV, AHPND, EHP, TSV, IMNV, YHV, CMNV Once per batch (150 animals) PCR All Once per batch Histology
  • 9. Broodstock and PL surveillance Process Target sample Target pathogen Frequency Diagnostic method Broodstock Routine All Fortnightly AHM & wet mount and histology Clinical signs All N/A Histology Broodstock for maturation 100% All Individual selection AHM Broodstock @ maturation Standard mortalities WSSV 100% PCR Clinical signs All N/A Histology Artemia biomass Routine WSSV, IHHNV, AHPND, EHP Every batch PCR Larval production Routine All Weekly AHM & wet mount Routine (cold challenge) WSSV 100% PCR Algae and artemia Vibrios (green colonies – TCBS) weekly Microbiology
  • 10. Nurseries and Grow out ponds Process Culture period Target sample Target pathogen frequency Diagnostic method Nursery and Grow out ponds Summer Routine (cold challenge*) WSSV 100% (before transfer) PCR All Monthly AHM & wet mount** Clinical signs WSSV N/A Rapid field test/PCR All N/A AHM & wet mount AHPND HP tubular constriction PCR All N/A Histology * Cold challenge is only for nursery juveniles (in summer) **During winter culture all the nurseries and grow out ponds are monitored fortnightly
  • 11. Wild crustacean Location Animal stage Target sample Target pathogen Frequency Diganostic method Zooplankton Routine WSSV Monthly PCR Shrimps/crabs Routine WSSV Monthly PCR Wild crustacean (farms,canals, intakes) Location Target sample Target pathogen Frequency Diagnostic method Main feeder canals, sub feeder canals and intakes Crabs, shrimps and zooplankton WSV and TSV (only shrimp) Monthly (summer) Fortnightly (winter) PCR Local fish markets Shrimps from different countries WSSV, TSV, IHHNV, NHP, ANPND, EHP, MBV and HPV Monthly PCR Local fishing boat (wild catch) Shrimps WSSV, TSV, AHPND, EHP Monthly PCRCrab WSSV Filter feeder TSV, AHPND
  • 12. Trainings and Simulation • Regular trainings on animal health monitoring and sample preparation to production team • Simulation exercise every year per production units
  • 14. Target sampling is essential!! Very crucial part of analysis Weak animals are the best sample Wrong samples = wrong information = wrong decisions
  • 15. Lethargic/Symptomatic animals : Near Pond dike/Check trays Easy way to find weak animals from a suspect ponds
  • 16. Animal Health Monitoring Process Flow Surveillance Program Production data (performance, water and soil quality) Animal Health Monitoring Program Batches with abnormalities/poor performance MUST be prioritized
  • 17. Indication of health status in a pond!!
  • 18. Animal Health Macroscopic Observations – Nurseries and GO Bird activity Best indication of abnormalities in the pond
  • 19. Animal Health Macroscopic Observations – Nurseries and GO Pond Normal Normal
  • 20. Animal Health Macroscopic Observations – Nurseries and GO Pond : abnormal Plankton blooms & inadequate pond preparation
  • 21. Possible causes • Inadequate pond preparation • Inlet filtration problems Possible problems • Increased FCR • Predation (PL) • Risk of microsporidia infection • Attracts birds Mitigation measures • Proper pond preparation • Application of Tea seed powder • Proper usage of bag nets Presence of crabs/Snails/fishes in culture ponds
  • 22. Fish + PL happa trial results Affect of fish population in survival of P. vannamei during the early stage Duration of the trial : 24 hours H1: 200 PL +5 Fish (with feeding) Survival:24% H2: 200 PL +5 Fish (no feeding) Survival:10% H3: 200 PL +no Fish (with feeding) Survival:93% Data obtained from NAQUA farms
  • 23. Animal Health Macroscopic Observations Possible causes • Disease reasons like WSSV Mitigation measures • Increase frequency of monitoring • Contingency if infection
  • 24. Body coloration Animal Health Macroscopic Observations Normal Abnormal Possible causes • Viral, Bacterial infection • Microsporidia infection
  • 25.
  • 26. Animal Health Macroscopic Observations Shell Normal Loose shell Possible causes • Disease reasons (HP bacterial infection) • Nutritional (under fed) & Wrong population estimation • Poor pond bottom water quality Mitigation measures • Recalculate feeding • Improve pond bottom water quality • Routine animal health monitoring
  • 27. Animal Health Macroscopic Observations Spots on carapace (no diagnostic value) Possible causes • WSSV • Bacterial spots (probiotic) • Water hardness
  • 28. Animal Health Macroscopic Observations Gill color Brown gillsNormal Black gills Melanization Conduct aquarium test to find out if it is due to pond bottom or melanization often related to a bacterial infection Possible causes • Poor pond bottom (more algae/organic load) • Excess feeding • Algal bloom • Bacterial infection Possible problems • Open doors to health problems Mitigation measures • Water exchange • Application of lime (small ponds)
  • 29. Animal Health Macroscopic Observations Tail Muscle Normal Probable causes • Muscle microsporidian infection • Bacterial infection • IMNV • Muscle cramp Abnormal
  • 30. Animal Health Macroscopic Observations Necrosis/melanization Probable causes • Bacterial infection • Chitinolytic/Chitinoblastic activity of Vibrio parahaemolyticus Mitigation measures • Application of molasses • Improve water quality
  • 31. Uropod reddishness/damage Grade 1 Grade 2 Grade 3 Grade 4 • Quality of the water • Bacterial infection? Animal Health Macroscopic Observations
  • 32. Hemolymph clotting test Animal Health Macroscopic Observations Hemolymph clotting time:  ~1 to 1.5 min – normal  ~1.5 to 2 min – abnormal (vibriosis, TS, WSD, stress)
  • 33. Hepatopancreas size Probable causes • Hp bacterial infection • Early mortality syndrome EMS • Poor feeding? Animal Health Macroscopic Observations
  • 34. Gill fouling Probable causes • Poor water quality • Poor pond bottom (dead algae/organic load • Algal bloom Possible problems • Open doors to pathogens • Toxicity • Bacterial infection Mitigation measures • Water exchange • Application of lime to thin plankton population Zoothamnium sp Leucothrix sp Animal Health Microscopic Observations Melanization Normal
  • 35. HP lipid vacuolization Probable causes • inadequate feeding • Disease reasons Risk mitigation • Recalculate feeding • Routine animal health monitoring High lipids Low lipids Animal Health Microscopic Observations
  • 36. HP tubular constriction & Melanization • First sign of toxic effects possibly blue green algae/ NHP / AHPND / Vibriosis Animal Health Microscopic Observations
  • 37. Animal Health Microscopic Observations Gut content analysis • Reduced growth • High FCR • Mollusc is an intermediate host of gregarines • Garlic in feed for every two weeks (gregarines) • Egg/Nauplii washing is effective for BP and MBV
  • 38. When to increase monitoring?? • Temperature fluctuation? And low temperature • After heavy rain • If there is any disease in farm or neighboring farm
  • 39. Remember!!!! • Do not ignore clinical signs! • Can be very expensive because losing opportunity to early detection and control • Could lead to disease outbreaks
  • 40. 20590.6 10466.9 4932 652.9 12980 22350 29055 0 5000 10000 15000 20000 25000 30000 35000 2010 2011 2012 2013 2014 2015 2016 Production year WSSV P. indicus P. vannamei P indicus vs P vannamei production comparison KSA back in shrimp production!
  • 41. Thank you for your attention!