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Image Formation
Greg McMullan
MRC-LMB
Russo 2010
Only use direct
beam, elasticall
scattered and
inelastically
scattered
contributions
Wavelengths
Green light 5600.000 Å
100 keV 0.037 Å
200 keV 0.025 Å
300 keV 0.020 Å
Green light/300 keV ~2.8 x 106
Electron lens
Electron lens behaves just like an optical lens.
Electrons spiral in the magnetic field
Electron lens
Quality of electron lens is equivalent to using a sphere for an
optical lens.
Apertures
θ=λ/d
4Å at 300 keV
Θ=0.02/4
= 5 mrad
= 0.3 degθ is the scattering angle
θ=λ/d
4Å at 300 keV
Θ=0.02/4
= 5 mrad
= 0.3 deg
Focal length, f, ~3 mm
Distance to diffraction plane is approximately
the focal length and so ~3 mm.
4Å spot at distance: fθ = 15 μm in diffraction
plane – distances from optical axis are very
small
Transmission Electron microscope
(bright field phase contrast)
Source
Condenser lens 1
Condenser lens 2
Objective lens
Sample
Objecive aperture
Intermediate lens
Projector lens
Detector
●
Condenser lens combination sets virtual
source position.
●
Condenser aperture set illumination angle
●
Objective aperture provides a high frequency
cut-off.
●
Objective aperture provides a source of
secondary electrons to help neutralise charge.
build up on sample.
Russo 2010
How many electrons interact with
the sample at once?
Dim Beam is Extremely Coherent
(extreme case Falcon3 counting)
●
0.5 e/pixel/s
●
4096x4096 => 16 million pixels => 10 million electrons
per second
●
300 keV electrons travel at 0.78 speed of light =>
2x10e8 m/s
●
Average distance between electrons:
2x10e8 m/s /(1x10e7/s) = 20 m
●
Cannot use microprobe because Fresnel rings cover
the image
Phase object
Ψ ~ 1 + iσ V
|Ψ|2
~ 1 + (σV)2
~ 1
To first order there is no contrast!
How do you see something?
Aperture contrast (objective
aperture)
Defocus
Phase plate
Phase Plate
Ψ ~ 1 + Φiσ V
|Ψ|2
~ 1 + 2 σV
Ideally Φ ~ i
So Ψ ~ 1 - σ V
Weak phase approximation (simplified)
-i s f/2i s f/2
Y ~ 1 – isf exp( -i c)/2 + isf exp( -i c)/2-i s f/2 exp(-ic )i s f/2 exp(-ic )
c(q) = 2p ( Df
q2
/2 – Cs
q4
/4)/l
|Y|2
~ 1 – 2sf sin( c)
Sample
Lens
Image
Focusing wavefunction back to image plane introduces
a phase shift of exp(-ic) where:
in which Df
is the defocus, Cs
the spherical aberration, l the
wavelength and q the scattering angle (q= l/d).
Scattered component of wavefunction is small and given by isf
in which f is the projected potential and s=2pmel/h2
.
Wavefunction at image plane is
so image i.e, probability of an electron arrival, is
Image FormationImage Formation
Bright field phase contrastBright field phase contrast
(gives most signal per unit of(gives most signal per unit of
radiation damage)radiation damage)
In focusIn focus 3 um3 um1 um1 um
Pt/Ir
Falcon III, 128 e/pixel Noise whitened power spectra
Falcon II, 28 e/pixel Noise whitened power spectra
Daily use of Thon RingsDaily use of Thon Rings
FEI Falcon III
Detector
(carbon film)
Alignment:
Pivot points
Astigmatism
Beam tilt
1 electron every
pixel – image
information just
visible.
Image are always
noisy – due to
finite number of
electrons that can
be used
High resolution
signal is below
the noise.
Drift corrected image Motion of selected particles
Bright field phase contrast of weakly scattering
object.

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Mc mullan imageformation

  • 2. Russo 2010 Only use direct beam, elasticall scattered and inelastically scattered contributions
  • 3. Wavelengths Green light 5600.000 Å 100 keV 0.037 Å 200 keV 0.025 Å 300 keV 0.020 Å Green light/300 keV ~2.8 x 106
  • 4. Electron lens Electron lens behaves just like an optical lens. Electrons spiral in the magnetic field
  • 5. Electron lens Quality of electron lens is equivalent to using a sphere for an optical lens.
  • 6. Apertures θ=λ/d 4Å at 300 keV Θ=0.02/4 = 5 mrad = 0.3 degθ is the scattering angle
  • 7. θ=λ/d 4Å at 300 keV Θ=0.02/4 = 5 mrad = 0.3 deg Focal length, f, ~3 mm Distance to diffraction plane is approximately the focal length and so ~3 mm. 4Å spot at distance: fθ = 15 μm in diffraction plane – distances from optical axis are very small
  • 8. Transmission Electron microscope (bright field phase contrast) Source Condenser lens 1 Condenser lens 2 Objective lens Sample Objecive aperture Intermediate lens Projector lens Detector ● Condenser lens combination sets virtual source position. ● Condenser aperture set illumination angle ● Objective aperture provides a high frequency cut-off. ● Objective aperture provides a source of secondary electrons to help neutralise charge. build up on sample.
  • 9.
  • 11.
  • 12. How many electrons interact with the sample at once?
  • 13. Dim Beam is Extremely Coherent (extreme case Falcon3 counting) ● 0.5 e/pixel/s ● 4096x4096 => 16 million pixels => 10 million electrons per second ● 300 keV electrons travel at 0.78 speed of light => 2x10e8 m/s ● Average distance between electrons: 2x10e8 m/s /(1x10e7/s) = 20 m ● Cannot use microprobe because Fresnel rings cover the image
  • 14. Phase object Ψ ~ 1 + iσ V |Ψ|2 ~ 1 + (σV)2 ~ 1 To first order there is no contrast!
  • 15. How do you see something? Aperture contrast (objective aperture) Defocus Phase plate
  • 16. Phase Plate Ψ ~ 1 + Φiσ V |Ψ|2 ~ 1 + 2 σV Ideally Φ ~ i So Ψ ~ 1 - σ V
  • 17. Weak phase approximation (simplified) -i s f/2i s f/2 Y ~ 1 – isf exp( -i c)/2 + isf exp( -i c)/2-i s f/2 exp(-ic )i s f/2 exp(-ic ) c(q) = 2p ( Df q2 /2 – Cs q4 /4)/l |Y|2 ~ 1 – 2sf sin( c) Sample Lens Image Focusing wavefunction back to image plane introduces a phase shift of exp(-ic) where: in which Df is the defocus, Cs the spherical aberration, l the wavelength and q the scattering angle (q= l/d). Scattered component of wavefunction is small and given by isf in which f is the projected potential and s=2pmel/h2 . Wavefunction at image plane is so image i.e, probability of an electron arrival, is
  • 18. Image FormationImage Formation Bright field phase contrastBright field phase contrast (gives most signal per unit of(gives most signal per unit of radiation damage)radiation damage) In focusIn focus 3 um3 um1 um1 um
  • 19. Pt/Ir Falcon III, 128 e/pixel Noise whitened power spectra
  • 20. Falcon II, 28 e/pixel Noise whitened power spectra
  • 21. Daily use of Thon RingsDaily use of Thon Rings FEI Falcon III Detector (carbon film) Alignment: Pivot points Astigmatism Beam tilt
  • 22.
  • 23. 1 electron every pixel – image information just visible. Image are always noisy – due to finite number of electrons that can be used
  • 24. High resolution signal is below the noise.
  • 25. Drift corrected image Motion of selected particles
  • 26. Bright field phase contrast of weakly scattering object.