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SJM College of Pharmacy,
Chitradurga
Prepare By,
Adarsh Patil
Ass Professor(Pharmacognosy)
SJM College of Pharmacy
1
PHARMACEUTICAL
BIOTECHNOLOGY
Genetic Organisation:
• All cellular activities are encoded within a cell’s DNA.
• The sequence of bases within a DNA molecule represents
the genetic information of the cell.
• Segments of DNA molecules are called genes, and
individual genes contain the instructional code necessary
for synthesizing various proteins, enzymes, or stable
RNA molecules.
• The full collection of genes that a cell contains within its genome is called
its genotype.
• However, a cell does not express all of its genes simultaneously. Instead, it
turns on (expresses) or turns off certain genes when necessary.
• The set of genes being expressed at any given point in time determines the
cell’s activities and its observable characteristics, referred to as
its phenotype.
• Genes that are always expressed are known as constitutive genes; some
constitutive genes are known as housekeeping genes because they are
necessary for the basic functions of the cell.
Organization of Genetic Material:
• The vast majority of an organism’s genome is organized into the
cell’s chromosomes, which are discrete DNA structures within
cells that control cellular activity.
• while eukaryotic chromosomes are housed in the membrane-bound
nucleus, most prokaryotes contain a single, circular chromosome
that is found in an area of the cytoplasm called the nucleoid
• A chromosome may contain several thousand genes.
1. Organization of Eukaryotic Chromosome
• Chromosome structure differs somewhat between
eukaryotic and prokaryotic cells.
• Eukaryotic chromosomes are typically linear, and
eukaryotic cells contain multiple distinct
chromosomes.
• Many eukaryotic cells contain two copies of each
chromosome and, therefore, are diploid.
• The length of a chromosome greatly exceeds the length
of the cell, so a chromosome needs to be packaged into a
very small space to fit within the cell. For example, the
combined length of all of the 3 billion base pairs of DNA
of the human genome would measure approximately 2
meters if completely stretched out, and some eukaryotic
genomes are many times larger than the human genome.
• DNA supercoiling refers to the process by which DNA is twisted to
fit inside the cell. Supercoiling may result in DNA that is either
underwound (less than one turn of the helix per 10 base pairs) or
overwound (more than one turn per 10 base pairs) from its normal
relaxed state.
• Proteins known to be involved in supercoiling
include topoisomerases; these enzymes help maintain the
structure of supercoiled chromosomes, preventing overwinding of
DNA during certain cellular processes like DNA replication.
• During DNA packaging, DNA-binding proteins
called histones perform various levels of DNA wrapping and
attachment to scaffolding proteins. The combination of DNA
with these attached proteins is referred to as chromatin.
• In eukaryotes, the packaging of DNA by histones may be
influenced by environmental factors that affect the presence
of methyl groups on certain cytosine nucleotides of DNA. The
influence of environmental factors on DNA packaging is
called epigenetics.
• Epigenetics is another mechanism for regulating
gene expression without altering the sequence of
nucleotides. Epigenetic changes can be
maintained through multiple rounds of cell
division and, therefore, can be heritable.
2. Organization of Prokaryotic Chromosomes
• Chromosomes in bacteria and archaea are usually
circular, and a prokaryotic cell typically contains only a
single chromosome within the nucleoid. Because the
chromosome contains only one copy of each gene,
prokaryotes are haploid.
• As in eukaryotic cells, DNA supercoiling is necessary
for the genome to fit within the prokaryotic cell..
• The DNA in the bacterial chromosome is arranged in several
supercoiled domains. As with eukaryotes, topoisomerases are
involved in supercoiling DNA
• DNA gyrase is a type of topoisomerase, found in bacteria and some
archaea, that helps prevent the overwinding of DNA. (Some
antibiotics kill bacteria by targeting DNA gyrase.)
• In addition, histone-like proteins bind DNA and aid in DNA
packaging. Other proteins bind to the origin of replication, the
location in the chromosome where DNA replication initiates.
• Because different regions of DNA are packaged differently,
some regions of chromosomal DNA are more accessible to
enzymes and thus may be used more readily as templates for
gene expression.
• Interestingly, several bacteria, including Helicobacter
pylori and Shigella flexneri, have been shown to induce
epigenetic changes in their hosts upon infection, leading to
chromatin remodeling that may cause long-term effects on
host immunity
Noncoding DNA
In addition to genes, a genome also contains many
regions of noncoding DNA that do not encode
proteins or stable RNA products. Noncoding DNA is
commonly found in areas prior to the start of coding
sequences of genes as well as in intergenic
regions (i.e., DNA sequences located between
genes)
• Prokaryotes appear to use their genomes very efficiently, with only an
average of 12% of the genome being taken up by noncoding sequences. In
contrast, noncoding DNA can represent about 98% of the genome in
eukaryotes,as seen in humans, but the percentage of noncoding DNA varies
between species.
• These noncoding DNA regions were once referred to as “junk DNA”;
however, this terminology is no longer widely accepted because scientists
have since found roles for some of these regions, many of which contribute
to the regulation of transcription or translation through the production
of small noncoding RNA molecules, DNA packaging, and chromosomal
stability.
Extrachromosomal DNA
• Although most DNA is contained within a cell’s chromosomes,
many cells have additional molecules of DNA outside the
chromosomes, called extrachromosomal DNA, that are
also part of its genome.
• The genomes of eukaryotic cells would also include the
chromosomes from any organelles such as mitochondria
and/or chloroplasts that these cells maintain
• The maintenance of circular chromosomes in these organelles
is a vestige of their prokaryotic origins and supports
the endosymbiotic theory
• In some cases, genomes of certain DNA viruses can also be
maintained independently in host cells during latent viral
infection. In these cases, these viruses are another form of
extrachromosomal DNA. For example, the human
papillomavirus (HPV) may be maintained in infected cells in
this way.
The genome of a eukaryotic cell consists of the chromosome housed in the
nucleus, and extrachromosomal DNA found in the mitochondria (all cells) and
chloroplasts (plants and algae).
• Besides chromosomes, some prokaryotes also have smaller
loops of DNA called plasmids that may contain one or a few
genes not essential for normal growth.
• Bacteria can exchange these plasmids with other bacteria in a
process known as horizontal gene transfer (HGT).
• The exchange of genetic material on plasmids sometimes
provides microbes with new genes beneficial for growth and
survival under special conditions.
• In some cases, genes obtained from plasmids may
have clinical implications, encoding virulence
factors that give a microbe the ability to cause
disease or make a microbe resistant to certain
antibiotics.
• Plasmids are also used heavily in genetic
engineering and biotechnology as a way to move
genes from one cell to another.
Viral Genomes
• Viral genomes exhibit significant diversity in
structure. Some viruses have genomes that consist
of DNA as their genetic material. This DNA may be
single stranded, as exemplified by
human parvoviruses, or double stranded, as seen
in the herpesviruses and poxviruses.
• Additionally, although all cellular life uses DNA as
its genetic material, some viral genomes are made
of either single-stranded or double-stranded RNA
molecules.
• Viral genomes are typically smaller than most
bacterial genomes, encoding only a few genes,
because they rely on their hosts to carry out many of
the functions required for their replication
Genome organisation

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Genome organisation

  • 1. SJM College of Pharmacy, Chitradurga Prepare By, Adarsh Patil Ass Professor(Pharmacognosy) SJM College of Pharmacy 1 PHARMACEUTICAL BIOTECHNOLOGY
  • 2. Genetic Organisation: • All cellular activities are encoded within a cell’s DNA. • The sequence of bases within a DNA molecule represents the genetic information of the cell. • Segments of DNA molecules are called genes, and individual genes contain the instructional code necessary for synthesizing various proteins, enzymes, or stable RNA molecules.
  • 3. • The full collection of genes that a cell contains within its genome is called its genotype. • However, a cell does not express all of its genes simultaneously. Instead, it turns on (expresses) or turns off certain genes when necessary. • The set of genes being expressed at any given point in time determines the cell’s activities and its observable characteristics, referred to as its phenotype. • Genes that are always expressed are known as constitutive genes; some constitutive genes are known as housekeeping genes because they are necessary for the basic functions of the cell.
  • 4. Organization of Genetic Material: • The vast majority of an organism’s genome is organized into the cell’s chromosomes, which are discrete DNA structures within cells that control cellular activity. • while eukaryotic chromosomes are housed in the membrane-bound nucleus, most prokaryotes contain a single, circular chromosome that is found in an area of the cytoplasm called the nucleoid • A chromosome may contain several thousand genes.
  • 5. 1. Organization of Eukaryotic Chromosome • Chromosome structure differs somewhat between eukaryotic and prokaryotic cells. • Eukaryotic chromosomes are typically linear, and eukaryotic cells contain multiple distinct chromosomes. • Many eukaryotic cells contain two copies of each chromosome and, therefore, are diploid.
  • 6. • The length of a chromosome greatly exceeds the length of the cell, so a chromosome needs to be packaged into a very small space to fit within the cell. For example, the combined length of all of the 3 billion base pairs of DNA of the human genome would measure approximately 2 meters if completely stretched out, and some eukaryotic genomes are many times larger than the human genome.
  • 7. • DNA supercoiling refers to the process by which DNA is twisted to fit inside the cell. Supercoiling may result in DNA that is either underwound (less than one turn of the helix per 10 base pairs) or overwound (more than one turn per 10 base pairs) from its normal relaxed state. • Proteins known to be involved in supercoiling include topoisomerases; these enzymes help maintain the structure of supercoiled chromosomes, preventing overwinding of DNA during certain cellular processes like DNA replication.
  • 8. • During DNA packaging, DNA-binding proteins called histones perform various levels of DNA wrapping and attachment to scaffolding proteins. The combination of DNA with these attached proteins is referred to as chromatin. • In eukaryotes, the packaging of DNA by histones may be influenced by environmental factors that affect the presence of methyl groups on certain cytosine nucleotides of DNA. The influence of environmental factors on DNA packaging is called epigenetics.
  • 9. • Epigenetics is another mechanism for regulating gene expression without altering the sequence of nucleotides. Epigenetic changes can be maintained through multiple rounds of cell division and, therefore, can be heritable.
  • 10.
  • 11. 2. Organization of Prokaryotic Chromosomes • Chromosomes in bacteria and archaea are usually circular, and a prokaryotic cell typically contains only a single chromosome within the nucleoid. Because the chromosome contains only one copy of each gene, prokaryotes are haploid. • As in eukaryotic cells, DNA supercoiling is necessary for the genome to fit within the prokaryotic cell..
  • 12. • The DNA in the bacterial chromosome is arranged in several supercoiled domains. As with eukaryotes, topoisomerases are involved in supercoiling DNA • DNA gyrase is a type of topoisomerase, found in bacteria and some archaea, that helps prevent the overwinding of DNA. (Some antibiotics kill bacteria by targeting DNA gyrase.) • In addition, histone-like proteins bind DNA and aid in DNA packaging. Other proteins bind to the origin of replication, the location in the chromosome where DNA replication initiates.
  • 13. • Because different regions of DNA are packaged differently, some regions of chromosomal DNA are more accessible to enzymes and thus may be used more readily as templates for gene expression. • Interestingly, several bacteria, including Helicobacter pylori and Shigella flexneri, have been shown to induce epigenetic changes in their hosts upon infection, leading to chromatin remodeling that may cause long-term effects on host immunity
  • 14. Noncoding DNA In addition to genes, a genome also contains many regions of noncoding DNA that do not encode proteins or stable RNA products. Noncoding DNA is commonly found in areas prior to the start of coding sequences of genes as well as in intergenic regions (i.e., DNA sequences located between genes)
  • 15.
  • 16. • Prokaryotes appear to use their genomes very efficiently, with only an average of 12% of the genome being taken up by noncoding sequences. In contrast, noncoding DNA can represent about 98% of the genome in eukaryotes,as seen in humans, but the percentage of noncoding DNA varies between species. • These noncoding DNA regions were once referred to as “junk DNA”; however, this terminology is no longer widely accepted because scientists have since found roles for some of these regions, many of which contribute to the regulation of transcription or translation through the production of small noncoding RNA molecules, DNA packaging, and chromosomal stability.
  • 17. Extrachromosomal DNA • Although most DNA is contained within a cell’s chromosomes, many cells have additional molecules of DNA outside the chromosomes, called extrachromosomal DNA, that are also part of its genome. • The genomes of eukaryotic cells would also include the chromosomes from any organelles such as mitochondria and/or chloroplasts that these cells maintain
  • 18. • The maintenance of circular chromosomes in these organelles is a vestige of their prokaryotic origins and supports the endosymbiotic theory • In some cases, genomes of certain DNA viruses can also be maintained independently in host cells during latent viral infection. In these cases, these viruses are another form of extrachromosomal DNA. For example, the human papillomavirus (HPV) may be maintained in infected cells in this way.
  • 19. The genome of a eukaryotic cell consists of the chromosome housed in the nucleus, and extrachromosomal DNA found in the mitochondria (all cells) and chloroplasts (plants and algae).
  • 20. • Besides chromosomes, some prokaryotes also have smaller loops of DNA called plasmids that may contain one or a few genes not essential for normal growth. • Bacteria can exchange these plasmids with other bacteria in a process known as horizontal gene transfer (HGT). • The exchange of genetic material on plasmids sometimes provides microbes with new genes beneficial for growth and survival under special conditions.
  • 21. • In some cases, genes obtained from plasmids may have clinical implications, encoding virulence factors that give a microbe the ability to cause disease or make a microbe resistant to certain antibiotics. • Plasmids are also used heavily in genetic engineering and biotechnology as a way to move genes from one cell to another.
  • 22. Viral Genomes • Viral genomes exhibit significant diversity in structure. Some viruses have genomes that consist of DNA as their genetic material. This DNA may be single stranded, as exemplified by human parvoviruses, or double stranded, as seen in the herpesviruses and poxviruses.
  • 23. • Additionally, although all cellular life uses DNA as its genetic material, some viral genomes are made of either single-stranded or double-stranded RNA molecules. • Viral genomes are typically smaller than most bacterial genomes, encoding only a few genes, because they rely on their hosts to carry out many of the functions required for their replication