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Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Spectroscopy Applications
Soil spectroscopy as a tool for the spatial
assessment of soil erosion states in agricultural
semi-arid Spain
Sabine Chabrillat1, Thomas Schmid2,
Robert Milewski1, Manuel Rodriguez2, Paula
Escribano3, Marta Pelayo2, Alicia Palacios-Orueta4
1 GFZ German Research Center for Geosciences, Potsdam, Germany
2 CIEMAT, Madrid, Spain
3 CSIC, Madrid, Spain
4 University Polytechnic Madrid, Spain
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Introduction
• I come from the remote sensing community
• We do similar work, but of course with extension / application to
remote sensing scale airborne or spaceborne
• Jargon is different
– VNIR  ONLY 0.4- 1.3 microns
– VNIR – Short Wave Infrared (SWIR)
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Background
• Soils
– carry out a number of key environmental functions
– Fragile soils in agricultural arid and semi-arid regions very sensitive to
erosion processes
– Processes monitoring and modeling requires a proven approach for soil
properties estimation (→applicable at all scales, repeatable, transferable)
• VNIR-SWIR spectroscopic methods as a soil analytical tool for the
accurate estimation of surface soil properties
– Proven capability to derive key soil variables
– Capabilities to infer deposition and erosion stages not demonstrated
• High relevance nowadays
– Digital soil mapping and soil monitoring initiatives
– Upcoming availability of next generation orbiting hyperspectral sensors
e..g EnMAp 2017
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
SEDMEDHY - Soil Erosion Detection within
MEDiterranean agricultural areas using Hyperspectral
data
• EU-FP7 EUFAR Transnational Access project (Lead: CIEMAT)
• Main objective: Examine the potential of soil spectroscopy for the
mapping and identification of soil erosion and deposition states,
→ Analyses of the spatial distribution of combined varying surface soil
properties (OM, CaCO3, texture, Fe)
• Scientific issues
– Discriminate crop residue, sparse vegetation, bare soil types
– Integrate detailed terrain information for small scale topographic variations
– Definition of soil surface characteristics as indicators of soil erosion stages
– Determination of a map of soil erosion assessment
– Address scaling issues of future spaceborne hyperspectral sensors
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Methods: HYSOMA software interface
Mask Product
Level 2+ Product
Level 2 Product
Water Mask
Bad Band Reduction
Bad Pixel Masking
Hysoma Soil Routines
Vegetation Mask
Hull Cont. Calc.
Band Depth Analysis
Spectral Index Calc.
Gaussian Fitting
CLAYCARBONATE
SOIL MOISTURESOC
CUSTOM
IRON
QualityControl L3
Level 3 Product
Analytical algorithms
Continuum removal
Reflectance modelling
User values (custom)
Literature detection methods
Thresholds and user values
• Experimental toobox
• To provide non-expert spectroscopy users
(hyperspectral users) with a suite of tools for
soil applications
• Download: www.gfz-potsdam.de/hysoma
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
HYSOMA soil algorithms
→ Currently 11 automatic soil functions for identification and semi-quantification
→ Fully quantitative mapping using field data for calibration (Option: “Generate
calibration file”)
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Study area: Camarena test site
Traditional rainfed
agricultural activities:
• Wheat/ Barley crops
• Vineyards
• Olive Groves
Mediterranean climate:
• Avg. annual temp of 15.4°C
• Avg. annual precipitation of
357 mm
Undulating topography, avg.
ele.v. 625m a.s.l.
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
→ Mostly evolved soils such as Calcic Haploxeralfs or Calcic Luvisols
Study area: Soils
Arcosic Sediment
→ Typical soil profile
(arcosic area)
→ Erosion features (water erosion)
associated with contrasting soil
horizons
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Erosion model
--- Tillage depth
→ Soil profile modification by tillage along the slope (De Alba et al., 2004)
1- Soil truncation due to net soil loss
2- Substitution of surface horizons
3- Inversion of horizons
4- Soil accumulation
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
HA Eagle mosaic
(Aug.10/2011)
LA Eagle mosaic
(Aug.8/2011)
• Field and laboratory data
– Field and laboratory spectroscopic analyses at selected sites linked with
geo- and bio-geochemical analyses (soil characterisation, LAI, crop
production)
– Soil sampling (0-10, 20-30, 30-50 cm) in the different erosional stages
– Soil characterisation: pH, EC, OM, CaCO3, Fe oxides, coarse fragments,
texture, color, description, soil mineralogy
– Spatial multiscale sampling protocol
• Airborne data
– NERC AISA Eagle and Hawk
hyperspectral data (400-2400 nm) at
different altitudes: 1.5 and 3 m Low Alt,
3 and 6 m High Alt
– LIDAR ALS50 (DEM <1m)
Data
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Analyses at selected sites
pH~8 at SU2 point, carbonate
horizons at top slope situation (Ck)
due to net soil loss
SU2
SU1
E1P1
E2P2
pH~5.5, B-horizons (clay & iron-
rich) exposed at top slope,
Sands in accumulation areas,
locally carb precipitates
SOUTH
SU location: Carbonatic area
NORTH
E1/s2 location: Arcosic area
+
+
++
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Multitemporal observations
Same area identified by condition
of wheat crop (chlorosis)
SU test site in fallow (08.Aug.11) and with wheat cultivation (23.Mar.12)
(SU2) Subsurf soil horizon outcrop (Ck)
SU2
→ Soil surface characteristics can be related with soil erosion states,
land management and vegetation conditions
SU location: Carbonatic area
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Mapping of soil properties based on AISA images
Camarena
reflectance cube
and predicted clay
and iron spatial
content
s2 s2 s2
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Definition of soil erosional stages classes
High (Ck)
Intermediate-high
Intermediate Bt
Internediate B
Accumulation
Image endmember reflectance spectra
+
+
++s2P1
SAMPLE pH EC CaCO3 organic matter Fe oxides Coarse fragments TEXTURE (% in <2mm fraction)
CRA (H2O 1:2,5) µS/cm (% w/w) (% w/w) (Holmgren, 1967) USDA % >2mm CLAY SILT SAND class
S2P1_C 6,71 27 0,9 0,23 0,15
S2P2_C 6,69 43 1,0 0,30 0,27
S2P3_C 8,21 111 9,7 0,17 0,15
S2P4_C 6,92 59 1,1 0,61 0,43
SU2_C 8,32 174 31,8 1,1 0,08 28,00 20 24 56 sandy clay loam
SU2
s2P3
s2P4
s2P2
s2P1
s2P2
s2P3
s2P4
TEXTURE (% in <2mm fraction)
CLAY SILT SAND class
11 9 80 sandy loam
36 16 48 sandy clay
32 21 48 sandy clay loam
39 22 40 clay loam
20 24 56 sandy clay loam
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Mapping of soil erosional stages
+
+
++
s2
High
Intermediate-high
Intermediate Bt
Internediate B
Accumulation
+
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Mapping of soil erosional stages (outlook)
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Summary/Outlook
• Results
– Spatial distribution of combined variable occurrences in clay, carbonate,
iron and sand content can be successfully detected at the field level and in
most case at the remote sensing level
– Depending on lithological background, identification and mapping of
different soil horizons could be tentatively linked to soil erosion states and
accumulation areas
– Use of classification methods vs. quantification
• Next steps
– Prediction accuracy: Validation using representative number of locations
– More generic approaches (SVM)
– Upscale to higher spatial scale (3m – 6m – 30m)
→ Transferability/ Application of the approach to other lithological and
environmental background
→ Link with hydrological and erosion modeling
Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013
Thank you for
your attention!

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Soil spectroscopy as a tool for the spatial assessment of soil erosion states in agricultural semi-arid Spain

  • 1. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Spectroscopy Applications Soil spectroscopy as a tool for the spatial assessment of soil erosion states in agricultural semi-arid Spain Sabine Chabrillat1, Thomas Schmid2, Robert Milewski1, Manuel Rodriguez2, Paula Escribano3, Marta Pelayo2, Alicia Palacios-Orueta4 1 GFZ German Research Center for Geosciences, Potsdam, Germany 2 CIEMAT, Madrid, Spain 3 CSIC, Madrid, Spain 4 University Polytechnic Madrid, Spain
  • 2. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Introduction • I come from the remote sensing community • We do similar work, but of course with extension / application to remote sensing scale airborne or spaceborne • Jargon is different – VNIR  ONLY 0.4- 1.3 microns – VNIR – Short Wave Infrared (SWIR)
  • 3. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Background • Soils – carry out a number of key environmental functions – Fragile soils in agricultural arid and semi-arid regions very sensitive to erosion processes – Processes monitoring and modeling requires a proven approach for soil properties estimation (→applicable at all scales, repeatable, transferable) • VNIR-SWIR spectroscopic methods as a soil analytical tool for the accurate estimation of surface soil properties – Proven capability to derive key soil variables – Capabilities to infer deposition and erosion stages not demonstrated • High relevance nowadays – Digital soil mapping and soil monitoring initiatives – Upcoming availability of next generation orbiting hyperspectral sensors e..g EnMAp 2017
  • 4. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 SEDMEDHY - Soil Erosion Detection within MEDiterranean agricultural areas using Hyperspectral data • EU-FP7 EUFAR Transnational Access project (Lead: CIEMAT) • Main objective: Examine the potential of soil spectroscopy for the mapping and identification of soil erosion and deposition states, → Analyses of the spatial distribution of combined varying surface soil properties (OM, CaCO3, texture, Fe) • Scientific issues – Discriminate crop residue, sparse vegetation, bare soil types – Integrate detailed terrain information for small scale topographic variations – Definition of soil surface characteristics as indicators of soil erosion stages – Determination of a map of soil erosion assessment – Address scaling issues of future spaceborne hyperspectral sensors
  • 5. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Methods: HYSOMA software interface Mask Product Level 2+ Product Level 2 Product Water Mask Bad Band Reduction Bad Pixel Masking Hysoma Soil Routines Vegetation Mask Hull Cont. Calc. Band Depth Analysis Spectral Index Calc. Gaussian Fitting CLAYCARBONATE SOIL MOISTURESOC CUSTOM IRON QualityControl L3 Level 3 Product Analytical algorithms Continuum removal Reflectance modelling User values (custom) Literature detection methods Thresholds and user values • Experimental toobox • To provide non-expert spectroscopy users (hyperspectral users) with a suite of tools for soil applications • Download: www.gfz-potsdam.de/hysoma
  • 6. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 HYSOMA soil algorithms → Currently 11 automatic soil functions for identification and semi-quantification → Fully quantitative mapping using field data for calibration (Option: “Generate calibration file”)
  • 7. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Study area: Camarena test site Traditional rainfed agricultural activities: • Wheat/ Barley crops • Vineyards • Olive Groves Mediterranean climate: • Avg. annual temp of 15.4°C • Avg. annual precipitation of 357 mm Undulating topography, avg. ele.v. 625m a.s.l.
  • 8. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 → Mostly evolved soils such as Calcic Haploxeralfs or Calcic Luvisols Study area: Soils Arcosic Sediment → Typical soil profile (arcosic area) → Erosion features (water erosion) associated with contrasting soil horizons
  • 9. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Erosion model --- Tillage depth → Soil profile modification by tillage along the slope (De Alba et al., 2004) 1- Soil truncation due to net soil loss 2- Substitution of surface horizons 3- Inversion of horizons 4- Soil accumulation
  • 10. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 HA Eagle mosaic (Aug.10/2011) LA Eagle mosaic (Aug.8/2011) • Field and laboratory data – Field and laboratory spectroscopic analyses at selected sites linked with geo- and bio-geochemical analyses (soil characterisation, LAI, crop production) – Soil sampling (0-10, 20-30, 30-50 cm) in the different erosional stages – Soil characterisation: pH, EC, OM, CaCO3, Fe oxides, coarse fragments, texture, color, description, soil mineralogy – Spatial multiscale sampling protocol • Airborne data – NERC AISA Eagle and Hawk hyperspectral data (400-2400 nm) at different altitudes: 1.5 and 3 m Low Alt, 3 and 6 m High Alt – LIDAR ALS50 (DEM <1m) Data
  • 11. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Analyses at selected sites pH~8 at SU2 point, carbonate horizons at top slope situation (Ck) due to net soil loss SU2 SU1 E1P1 E2P2 pH~5.5, B-horizons (clay & iron- rich) exposed at top slope, Sands in accumulation areas, locally carb precipitates SOUTH SU location: Carbonatic area NORTH E1/s2 location: Arcosic area + + ++
  • 12. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Multitemporal observations Same area identified by condition of wheat crop (chlorosis) SU test site in fallow (08.Aug.11) and with wheat cultivation (23.Mar.12) (SU2) Subsurf soil horizon outcrop (Ck) SU2 → Soil surface characteristics can be related with soil erosion states, land management and vegetation conditions SU location: Carbonatic area
  • 13. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Mapping of soil properties based on AISA images Camarena reflectance cube and predicted clay and iron spatial content s2 s2 s2
  • 14. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Definition of soil erosional stages classes High (Ck) Intermediate-high Intermediate Bt Internediate B Accumulation Image endmember reflectance spectra + + ++s2P1 SAMPLE pH EC CaCO3 organic matter Fe oxides Coarse fragments TEXTURE (% in <2mm fraction) CRA (H2O 1:2,5) µS/cm (% w/w) (% w/w) (Holmgren, 1967) USDA % >2mm CLAY SILT SAND class S2P1_C 6,71 27 0,9 0,23 0,15 S2P2_C 6,69 43 1,0 0,30 0,27 S2P3_C 8,21 111 9,7 0,17 0,15 S2P4_C 6,92 59 1,1 0,61 0,43 SU2_C 8,32 174 31,8 1,1 0,08 28,00 20 24 56 sandy clay loam SU2 s2P3 s2P4 s2P2 s2P1 s2P2 s2P3 s2P4 TEXTURE (% in <2mm fraction) CLAY SILT SAND class 11 9 80 sandy loam 36 16 48 sandy clay 32 21 48 sandy clay loam 39 22 40 clay loam 20 24 56 sandy clay loam
  • 15. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Mapping of soil erosional stages + + ++ s2 High Intermediate-high Intermediate Bt Internediate B Accumulation +
  • 16. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Mapping of soil erosional stages (outlook)
  • 17. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Summary/Outlook • Results – Spatial distribution of combined variable occurrences in clay, carbonate, iron and sand content can be successfully detected at the field level and in most case at the remote sensing level – Depending on lithological background, identification and mapping of different soil horizons could be tentatively linked to soil erosion states and accumulation areas – Use of classification methods vs. quantification • Next steps – Prediction accuracy: Validation using representative number of locations – More generic approaches (SVM) – Upscale to higher spatial scale (3m – 6m – 30m) → Transferability/ Application of the approach to other lithological and environmental background → Link with hydrological and erosion modeling
  • 18. Workshop: Soil spectroscopy, FAO HQ, Rome, Dec 2013 Thank you for your attention!