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A. Townsend Peterson
University of Kansas
Studying Drivers of Biodiversity Change
• Many potential drivers: land use change, direct
exploitation, climate change, sea level change…
• Anticipate future change: requires present-day
model, and future projections of drivers
• Document change to date: requires detailed
before-and-after views of distributions,
abundances, and/or conservation status
• We will explore both of these approaches…
Point-based Distributional Data
• Definition: data records placing a particular
species at a particular location at a particular
point in time
• Primary data – this is the basis of all other
distributional data
• Abundant – millions of specimens, probably
billions of observations are ‘out there’
• Major initiatives – ORNIS, eBird, GBIF, etc.
• Dimensionless – a point has no area; biodiversity
‘points’ have only a basement level of uncertainty
• Useful at any resolution above the basement
level of uncertainty
DISTRIBUTED BIODIVERSITY DATABASES
REMIB
PROJECTIONS TO FUTURE CLIMATE
CONDITIONS…
Ecological Niche Modeling
• Empirical, data-driven
search for associations
between occurrence
and environment
• Significant predictive
ability in hundreds of
studies
ADD EFFECTS OF SEA LEVEL CHANGE
Sea Level Rise and Coastline Effects
US Effects
COMPLEMENT vs OVERLAP?
MEASURING AVIFAUNAL TURNOVER
IN RECENT HISTORICAL TIMES…
Well-sampled Recent Grid Squares
Species Gains
Species Losses
Overall Species Turnover
Significant Drivers of Turnover
• Observed precipitation change – NO
significant effect
• Observed temperature change – YES – strong
significant effects
• Human impact on landscapes – NO significant
effect
• BUT – results are coarse in nature …
Misantla, Veracruz
Valley of Mexico
Methods III
Check coincidence
between the two
sources
Quiscalus palustris
Sandhill Crane
Grus canadensis
Present-day distribution
"Oldmexicocity" by Juan Gómez de Trasmonte, 1628 (d. 17th century) - Mexico Maxico. Licensed under Public Domain via
Commons - https://commons.wikimedia.org/wiki/File:Oldmexicocity.jpg#/media/File:Oldmexicocity.jpg
Gran Canal outlet
in Zumpango: «Cajas
del desagüe del gran canal
(1)» de Marrovi - Trabajo
propio. Disponible bajo la
licencia CC BY-SA 3.0 vía
Wikimedia Commons -
https://commons.wikimedia.o
rg/wiki/File:Cajas_del_desag
%C3%BCe_del_gran_canal_(1
).JPG#/media/File:Cajas_del_
desag%C3%BCe_del_gran_ca
nal_(1).JPG
Misantla, Veracruz
• 2012 thesis in the
Facultad de Ciencias,
UNAM
• Site well known and
well characterized
from early
ornithological
collections…
Misantla 2001-2012
Misantla 1850-present
"Battle of Veracruz" by Adolphe Jean-Baptiste Bayot - Originally published in The War Between the United States and
Mexico, Illustrated, 1851. Licensed under Public Domain via Commons -
https://commons.wikimedia.org/wiki/File:Battle_of_Veracruz.jpg#/media/File:Battle_of_Veracruz.jpg
Observed Change … Summary
Can we do this in India?
What’s Missing?
BIODIVERSITY INFORMATICS: MAKING
PRIMARY BIODIVERSITY DATA AVAILABLE
Biodiversity Informatics Training
Curriculum Courses
• Data Capture
• Biodiversity Inventories
• Data Cleaning
• Data Publishing
• Biodiversity Data Analysis
• Species Descriptions
• Using R
• Using QGIS
• Possibly modules on
Refine, EstimateS (under
development)
• Public Health
Applications
• Ecological Niche
Modeling
• National Biodiversity
Diagnoses
• Conservation
Implementation
• Building Biodiversity
Informatics Institutions
Project Webpage
Communications - Facebook
Interchange – Scientific Journal
BITC Version 1.1
• The curriculum is basically complete
– 500+ videos make up the present curriculum
version, covering topics from data capture to
building institutions
• The curriculum is available
– online via the project webpage
– in pdf format via Biodiversity Informatics (soon to
appear)
– on USB keys and in DVD formats (by request)
Summary
• Biodiversity is highly dynamic, but the natural
dynamics are augmented by anthropogenic
change in recent decades
• Studying biodiversity change is complex:
– Future projections are hypothetical and hard to test
– Assessments of change already realized are highly
dependent on before-and-after datasets
• Creativity is key in making these studies possible
• Access to abundant and comprehensive data is
crucial to any advances
Links
• Town Peterson town@ku.edu
• BITC webpage http://biodiversity-
informatics-training.org/
• Facebook
https://www.facebook.com/groups/Biodi
versityInformatics/

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Detecting and Documenting Biodiversity Dynamics in the Face of Global Change

  • 2. Studying Drivers of Biodiversity Change • Many potential drivers: land use change, direct exploitation, climate change, sea level change… • Anticipate future change: requires present-day model, and future projections of drivers • Document change to date: requires detailed before-and-after views of distributions, abundances, and/or conservation status • We will explore both of these approaches…
  • 3. Point-based Distributional Data • Definition: data records placing a particular species at a particular location at a particular point in time • Primary data – this is the basis of all other distributional data • Abundant – millions of specimens, probably billions of observations are ‘out there’ • Major initiatives – ORNIS, eBird, GBIF, etc. • Dimensionless – a point has no area; biodiversity ‘points’ have only a basement level of uncertainty • Useful at any resolution above the basement level of uncertainty
  • 5. PROJECTIONS TO FUTURE CLIMATE CONDITIONS…
  • 6. Ecological Niche Modeling • Empirical, data-driven search for associations between occurrence and environment • Significant predictive ability in hundreds of studies
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  • 12. ADD EFFECTS OF SEA LEVEL CHANGE
  • 13. Sea Level Rise and Coastline Effects
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  • 21. MEASURING AVIFAUNAL TURNOVER IN RECENT HISTORICAL TIMES…
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  • 28. Significant Drivers of Turnover • Observed precipitation change – NO significant effect • Observed temperature change – YES – strong significant effects • Human impact on landscapes – NO significant effect • BUT – results are coarse in nature …
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  • 44. "Oldmexicocity" by Juan Gómez de Trasmonte, 1628 (d. 17th century) - Mexico Maxico. Licensed under Public Domain via Commons - https://commons.wikimedia.org/wiki/File:Oldmexicocity.jpg#/media/File:Oldmexicocity.jpg
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  • 51. Gran Canal outlet in Zumpango: «Cajas del desagüe del gran canal (1)» de Marrovi - Trabajo propio. Disponible bajo la licencia CC BY-SA 3.0 vía Wikimedia Commons - https://commons.wikimedia.o rg/wiki/File:Cajas_del_desag %C3%BCe_del_gran_canal_(1 ).JPG#/media/File:Cajas_del_ desag%C3%BCe_del_gran_ca nal_(1).JPG
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  • 53. Misantla, Veracruz • 2012 thesis in the Facultad de Ciencias, UNAM • Site well known and well characterized from early ornithological collections…
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  • 56. Misantla 1850-present "Battle of Veracruz" by Adolphe Jean-Baptiste Bayot - Originally published in The War Between the United States and Mexico, Illustrated, 1851. Licensed under Public Domain via Commons - https://commons.wikimedia.org/wiki/File:Battle_of_Veracruz.jpg#/media/File:Battle_of_Veracruz.jpg
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  • 59. Can we do this in India?
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  • 63. BIODIVERSITY INFORMATICS: MAKING PRIMARY BIODIVERSITY DATA AVAILABLE
  • 64. Biodiversity Informatics Training Curriculum Courses • Data Capture • Biodiversity Inventories • Data Cleaning • Data Publishing • Biodiversity Data Analysis • Species Descriptions • Using R • Using QGIS • Possibly modules on Refine, EstimateS (under development) • Public Health Applications • Ecological Niche Modeling • National Biodiversity Diagnoses • Conservation Implementation • Building Biodiversity Informatics Institutions
  • 68. BITC Version 1.1 • The curriculum is basically complete – 500+ videos make up the present curriculum version, covering topics from data capture to building institutions • The curriculum is available – online via the project webpage – in pdf format via Biodiversity Informatics (soon to appear) – on USB keys and in DVD formats (by request)
  • 69. Summary • Biodiversity is highly dynamic, but the natural dynamics are augmented by anthropogenic change in recent decades • Studying biodiversity change is complex: – Future projections are hypothetical and hard to test – Assessments of change already realized are highly dependent on before-and-after datasets • Creativity is key in making these studies possible • Access to abundant and comprehensive data is crucial to any advances
  • 70. Links • Town Peterson town@ku.edu • BITC webpage http://biodiversity- informatics-training.org/ • Facebook https://www.facebook.com/groups/Biodi versityInformatics/