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1
Cell Biology
A cell is chemical system that is able to maintain its structure
and reproduce. Cells are the fundamental unit of life. All
living things are cells or composed of cells.
2
The interior contents of cells is the cytoplasm. The cytoplasm is
isolated from the surrounding environment by the ______ ______ .
There are two fundamentally different forms of cells.
__________ cells -
relatively simple cells - lack
nuclear membrane and many
organelles - bacteria and
their relatives are all
prokaryotic
___________ cells - more
complex cells - have a
nucleus and many organelles
- all cells of plants, animals,
fungi, and protists
3
Most cells are small
Prokaryotic: 1-10 µm
Eukaryotic: 10 - 100 µm
(1 µm = .001 mm)
Cells and
organelles
4
Organelles, Macromolecules, & Atoms
5
As cell size
increases the
volume increases
much faster than
the surface area.
Cells obtain
nutrients, gain
information and
rid waste through
their plasma
membrane.
As cell size increases, a cell’s ability to exchange with its
environment becomes limited by the amount of membrane area that
is available for exchange.
Why are cells small?
6
Robert Hooke - 1665 -
using an early microscope
viewed cork and saw many
repeating box-like
structures and called them
“cells.”
What he saw were spaces
surrounded by walls that
once contained living
cells. Since Hooke’s first observations
what is known about cells has
increased greatly.
7
Cell Theory
• Cells are the fundamental unit of life - nothing less than a cell is
alive.
• All organisms are constructed of and by cells.
• All cells arise from preexisting cells. Cells contain the
information necessary for their own reproduction. No new
cells are originating spontaneously on earth today.
• Cells are the functional units of life. All biochemical processes
are carried out by cells.
• Groups of cells can be organized and function as multicellular
organisms
• Cells of multicellular organisms can become specialized in form
and function to carry out subprocesses of the multicellular
organism.
8
Prokaryotic cell structure
small, with a plasma membrane surrounded by a rigid cell wall -
in many the cell wall is made of _____________ - a carbohydrate
cross-linked with polypeptides
cell wall may be covered with a capsule made of polysaccharides
few or no membrane
enclosed spaces
within the cytoplasm
no nucleus - DNA is
in a region called the
nucleoid
DNA is circular and
naked (has no protein
associated with it)
9
Bacteria often have flagella with a single protein core (flagellin)
that they can use to move in a rotary corkscrew like fashion
The rotary motor
of prokaryotic
flagella is
powered by
proton flow
through the cell
membrane.
Rotating
structures are
rare in nature.
10
Membrane enclosed spaces allow cell functions to be
compartmentalized and isolated from other functions.
Prokaryotes lack membrane enclosed spaces in their cytoplasm.
Some prokaryotes are
photosynthetic. The
biochemical machinery
for trapping light energy
is contained within a
highly folded plasma
membrane.
11
Eukaryotic cell structure
larger, with a typical plasma membrane - some with a cell wall
Many _________________________ and other interior spaces
enclosed by membranes:
Nucleus, Endoplasmic reticulum, Golgi apparatus,
Mitochondria, Chloroplasts, Lysosomes,Vacuoles, Vesicles
Cytoplasm with a cytoskeleton - protein tubules and fibers
cell wall found in plants (cellulose), fungi (chitin), some protists
12
Cellular Organelles
Nucleus - the largest and most obvious membrane bound
compartment - controls cell activities
contains the nucleolus - a darkened region where ribosomal RNA is
synthesized
contains chromosomes - consist of DNA wrapped around proteins
13
Nucleus is surrounded by the nuclear envelope - a double
membrane
Nuclear membrane has nuclear pores that control entry and exit of
materials
14
Chromosome - “colored body”
consists of both DNA and protein - seen as chromosomes when
highly condensed in preparation for cell division
At other times the DNA and
protein are threadlike and
called __________.
The most common proteins
are histones. DNA is coiled
around histones in a regular
pattern that produces
structures called
nucleosomes.
15
Endoplasmic reticulum (ER) - a web-like series of membranes
within the cytoplasm in the form of flattened sheets, sacs, tubes,
creates many membrane enclosed spaces - spreads throughout
the cytoplasm - has connections with the outer membrane of the
nucleus and the plasma membrane
interior space is called the ______
Functions:
-circulation and
transport
-storage of proteins
and minerals
-synthesis of lipids,
carbohydrates, and
proteins
-A large surface area
for enzyme action.
16
Two types of ER - rough and smooth
rough ER - studded with ribosomes
site of synthesis of many proteins
all ribosomes on rER are actively
involved in protein synthesis -
smooth ER - site for synthesis of
steroids and other lipids
Ca++ storage in muscles
detoxification of drugs, toxins,
alcohol (especially in liver)
The highly convoluted surface
provides a large surface area for
enzymatic activities. Many enzymes
are imbedded in the membranes.
17
Ribosomes - protein
synthetic machinery
• two subunits - large and
small - each made of
protein and ribosomal
RNA (rRNA)
• subunits associate when
they are synthesizing
proteins
• protein synthesis occurs
on ribosomes that are
free-floating in the
cytoplasm and on
ribosomes attached to ER
• rRNA is synthesized in
the nucleolus
18
Golgi Apparatus -
a collection of membranes associated with the ER
composed of flatten sacs called _________
concentrates and packages proteins synthesized on the ER
The Golgi is functionally associated with the ER.
19
Proteins synthesized on
the ER are concentrated
internally and transport
vesicles are budded off
Transport vesicles fuse
with the Golgi, dump
their contents into the
Golgi
Golgi packages proteins
in vesicles so that they
may be excreted from
the cell, or used within
the cell.
Secretory vesicles - used for excretion -
leave the Golgi and move to plasma
membrane where they fuse and dump
their contents outside - seen in many
glands
20
The Golgi Apparatus also forms lysosomes
Lysosomes - vesicles filled with digestive enzymes - used for
intracellular digestion
Particles can be
taken into cell
by phagocytosis
and vesicle fused
with lysosome
The components
of organelles can
be recycled after
digestion by
lysosomes
21
Microbodies: Peroxisomes and Glyoxisomes
vesicles that form through growth and division within the
cytoplasm
Glyoxisomes are found in plants - contain enzymes that convert
fats into carbohydrates
Peroxisomes - used for
removing reactive
compounds from the
cytoplasm - create H2O2 as
a byproduct and degrade it
with the enzyme catalase
22
Mitochondria - cellular powerhouses - the site of much of the
energy harvest by cells
have double membrane structure
inner membrane folded into inward projections
called cristae
two spaces within the mitochondrion -
the matrix and the intermembrane space
23
Mitochondria -
• The site of oxygen consumption within cells
• Have their own DNA that is similar to prokaryotic DNA
• Have their own ribosomes that are similar in construction to
prokaryotic ribosomes
• Synthesize many, but not all, of their own proteins
• Mitochondria replicate by binary fission - similar to prokaryotic
cell division
24
Chloroplasts - sites of photosynthesis - in nearly all plants and
some protists
trap light energy and convert it into chemical energy
have double membrane structure - inner space is the stroma
Within the stroma
have a series of
stacks of flattened
membrane
structures called
thylakoids - the
stacks are called
grana The light energy trapping molecules of
photosynthesis are found in the membranes of
the thylakoids.
25
Chloroplasts
have their own DNA, similar to prokaryotic DNA
Can synthesize many of their own proteins using prokaryote-like
ribosomes
Synthesize many, but not all, of their own proteins
Replicate through division similar to prokaryotic cell division
Chloroplasts can take on other functions
____________ synthesize and store starch in roots and tubers
____________ have pigments and give fruits ripened color
26
Centrioles - are part of specialized region of the cell called the
centrosome (cell center)
found in animals and most protists
the centrioles are involved in the
production of microtubules
microtubules have many functions
including moving chromosomes
during cell division
centriole structure - 9 triplets of
microtubules surrounding a hollow
core - ________________
similar to the basal body of flagella
27
Cytoskeleton - scaffolding of proteins that transport materials,
position and move organelles, maintain and change cell shape,
and organize enzymes into functional associations
3 components - actin filaments, microtubules, and
intermediate filaments
all are polymers of smaller
protein subunits -
lengthen through addition
of polymer subunits,
shorten through
______________
28
actin filaments - involved in cell movements and in membrane
deformations - smallest components of the cytoskeleton
microtubules - hollow tubes made of proteins called tubulins
responsible for cell movements and movements of organelles
within the cytoplasm, movement of chromosomes during
cell division - largest components of the cytoskeleton
intermediate filaments
- 8 stranded protein
fibers - play a role in
cell structure, anchoring
organelles
and in transport of
materials within the
cytoplasm
anchor neighboring cells
to each other in tissues
29
Flagella and Cilia - cellular appendages
can propel cells or propel materials over the cell surface
cells that have flagella have few (usually 1 or 2)
cells that have cilia have many - covering the surface
flagella move with whip-like movements to propel the cell
cilia have a more regular stroke and groups of cilia appear to
move in unison, resulting in a wave-like motion
flagella 5 to 20x longer than cilia
30
Structure
has basal body with 9 + 0
structure of microtubules
flagellum is membrane
bound with pairs of
microtubules in a 9+2
pattern
each pair of tubules has
short arms of another
protein - dynein -
that extend to
neighboring tubules
movement of the flagellum is produced by sliding of the
microtubule pairs
31
Plant Cells have, in addition to the collection of organelles found
in other groups, a central vacuole for storage and for producing
________ pressure inside the the cell.
The central vacuole is usually
filled with water and solutes.
A high solute concentration
draws water into the vacuole,
expanding the vacuole and the
cell.
Because plant cells are
enclosed by a cell wall, the
expansion of the vacuole can
exert pressure on the cell
without causing the cell to
burst.
32
Plants have cell walls made of cellulose.
During cell division plant cells build dividing walls between the
two new cells called the cell plate. An adhesive layer - the
middle lamella - is laid down between the new cell walls
Cell walls can be thickened through the addition of materials to
the inside of the primary cell wall.
33
Where did Eukaryotic Cells come from?
The oldest rocks with evidence of fossil cells date to 3.5 billion
years. The oldest rocks with cells large and complex enough to
be eukaryotic date to 1.0 billion years.
For 2.5 billion years only prokaryotic cells existed on earth.
The best hypothesis for the origin of eukaryotic cells was
proposed by Lynn Margulis in the early 1970s. This hypothesis
is now called the _____________ ___________.
Eukaryotic cells appear to be the
product of a collaboration among
different types of prokaryotic cells.
Some prokaryotic cells became the
host for other prokaryotic cells that
lived inside them. Some of the
complex organelles of eukaryotes
provide evidence for this theory.
34
Mitochondria and chloroplasts appear to be the direct
descendants of energy producing bacteria. Mitochondria are the
descendants of bacteria that were capable of oxidative respiration.
Chloroplasts are the descendants of photosynthetic bacteria.
35
Evidence:
Both have their own DNA and ribosomes that are similar to those
found in prokaryotes. Both make many of their own proteins and
both multiply in a fashion similar to prokaryotic cell division.
Both are double membrane organelles - the inner membrane
descended from the ancestral guest cell, and the outer membrane
descended from the vacuole membrane that was formed around
the guest.
Other organelles may also be the product of endosymbiosis.
Some centrioles and basal bodies have naked DNA as part of
their structure.
There are many modern examples of endosymbiosis involving
organisms that can live together or live independently. The same
was probably true of the ancestors of endosymbiotic organelles in
the distant past.

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Cell biology

  • 1. 1 Cell Biology A cell is chemical system that is able to maintain its structure and reproduce. Cells are the fundamental unit of life. All living things are cells or composed of cells.
  • 2. 2 The interior contents of cells is the cytoplasm. The cytoplasm is isolated from the surrounding environment by the ______ ______ . There are two fundamentally different forms of cells. __________ cells - relatively simple cells - lack nuclear membrane and many organelles - bacteria and their relatives are all prokaryotic ___________ cells - more complex cells - have a nucleus and many organelles - all cells of plants, animals, fungi, and protists
  • 3. 3 Most cells are small Prokaryotic: 1-10 µm Eukaryotic: 10 - 100 µm (1 µm = .001 mm) Cells and organelles
  • 5. 5 As cell size increases the volume increases much faster than the surface area. Cells obtain nutrients, gain information and rid waste through their plasma membrane. As cell size increases, a cell’s ability to exchange with its environment becomes limited by the amount of membrane area that is available for exchange. Why are cells small?
  • 6. 6 Robert Hooke - 1665 - using an early microscope viewed cork and saw many repeating box-like structures and called them “cells.” What he saw were spaces surrounded by walls that once contained living cells. Since Hooke’s first observations what is known about cells has increased greatly.
  • 7. 7 Cell Theory • Cells are the fundamental unit of life - nothing less than a cell is alive. • All organisms are constructed of and by cells. • All cells arise from preexisting cells. Cells contain the information necessary for their own reproduction. No new cells are originating spontaneously on earth today. • Cells are the functional units of life. All biochemical processes are carried out by cells. • Groups of cells can be organized and function as multicellular organisms • Cells of multicellular organisms can become specialized in form and function to carry out subprocesses of the multicellular organism.
  • 8. 8 Prokaryotic cell structure small, with a plasma membrane surrounded by a rigid cell wall - in many the cell wall is made of _____________ - a carbohydrate cross-linked with polypeptides cell wall may be covered with a capsule made of polysaccharides few or no membrane enclosed spaces within the cytoplasm no nucleus - DNA is in a region called the nucleoid DNA is circular and naked (has no protein associated with it)
  • 9. 9 Bacteria often have flagella with a single protein core (flagellin) that they can use to move in a rotary corkscrew like fashion The rotary motor of prokaryotic flagella is powered by proton flow through the cell membrane. Rotating structures are rare in nature.
  • 10. 10 Membrane enclosed spaces allow cell functions to be compartmentalized and isolated from other functions. Prokaryotes lack membrane enclosed spaces in their cytoplasm. Some prokaryotes are photosynthetic. The biochemical machinery for trapping light energy is contained within a highly folded plasma membrane.
  • 11. 11 Eukaryotic cell structure larger, with a typical plasma membrane - some with a cell wall Many _________________________ and other interior spaces enclosed by membranes: Nucleus, Endoplasmic reticulum, Golgi apparatus, Mitochondria, Chloroplasts, Lysosomes,Vacuoles, Vesicles Cytoplasm with a cytoskeleton - protein tubules and fibers cell wall found in plants (cellulose), fungi (chitin), some protists
  • 12. 12 Cellular Organelles Nucleus - the largest and most obvious membrane bound compartment - controls cell activities contains the nucleolus - a darkened region where ribosomal RNA is synthesized contains chromosomes - consist of DNA wrapped around proteins
  • 13. 13 Nucleus is surrounded by the nuclear envelope - a double membrane Nuclear membrane has nuclear pores that control entry and exit of materials
  • 14. 14 Chromosome - “colored body” consists of both DNA and protein - seen as chromosomes when highly condensed in preparation for cell division At other times the DNA and protein are threadlike and called __________. The most common proteins are histones. DNA is coiled around histones in a regular pattern that produces structures called nucleosomes.
  • 15. 15 Endoplasmic reticulum (ER) - a web-like series of membranes within the cytoplasm in the form of flattened sheets, sacs, tubes, creates many membrane enclosed spaces - spreads throughout the cytoplasm - has connections with the outer membrane of the nucleus and the plasma membrane interior space is called the ______ Functions: -circulation and transport -storage of proteins and minerals -synthesis of lipids, carbohydrates, and proteins -A large surface area for enzyme action.
  • 16. 16 Two types of ER - rough and smooth rough ER - studded with ribosomes site of synthesis of many proteins all ribosomes on rER are actively involved in protein synthesis - smooth ER - site for synthesis of steroids and other lipids Ca++ storage in muscles detoxification of drugs, toxins, alcohol (especially in liver) The highly convoluted surface provides a large surface area for enzymatic activities. Many enzymes are imbedded in the membranes.
  • 17. 17 Ribosomes - protein synthetic machinery • two subunits - large and small - each made of protein and ribosomal RNA (rRNA) • subunits associate when they are synthesizing proteins • protein synthesis occurs on ribosomes that are free-floating in the cytoplasm and on ribosomes attached to ER • rRNA is synthesized in the nucleolus
  • 18. 18 Golgi Apparatus - a collection of membranes associated with the ER composed of flatten sacs called _________ concentrates and packages proteins synthesized on the ER The Golgi is functionally associated with the ER.
  • 19. 19 Proteins synthesized on the ER are concentrated internally and transport vesicles are budded off Transport vesicles fuse with the Golgi, dump their contents into the Golgi Golgi packages proteins in vesicles so that they may be excreted from the cell, or used within the cell. Secretory vesicles - used for excretion - leave the Golgi and move to plasma membrane where they fuse and dump their contents outside - seen in many glands
  • 20. 20 The Golgi Apparatus also forms lysosomes Lysosomes - vesicles filled with digestive enzymes - used for intracellular digestion Particles can be taken into cell by phagocytosis and vesicle fused with lysosome The components of organelles can be recycled after digestion by lysosomes
  • 21. 21 Microbodies: Peroxisomes and Glyoxisomes vesicles that form through growth and division within the cytoplasm Glyoxisomes are found in plants - contain enzymes that convert fats into carbohydrates Peroxisomes - used for removing reactive compounds from the cytoplasm - create H2O2 as a byproduct and degrade it with the enzyme catalase
  • 22. 22 Mitochondria - cellular powerhouses - the site of much of the energy harvest by cells have double membrane structure inner membrane folded into inward projections called cristae two spaces within the mitochondrion - the matrix and the intermembrane space
  • 23. 23 Mitochondria - • The site of oxygen consumption within cells • Have their own DNA that is similar to prokaryotic DNA • Have their own ribosomes that are similar in construction to prokaryotic ribosomes • Synthesize many, but not all, of their own proteins • Mitochondria replicate by binary fission - similar to prokaryotic cell division
  • 24. 24 Chloroplasts - sites of photosynthesis - in nearly all plants and some protists trap light energy and convert it into chemical energy have double membrane structure - inner space is the stroma Within the stroma have a series of stacks of flattened membrane structures called thylakoids - the stacks are called grana The light energy trapping molecules of photosynthesis are found in the membranes of the thylakoids.
  • 25. 25 Chloroplasts have their own DNA, similar to prokaryotic DNA Can synthesize many of their own proteins using prokaryote-like ribosomes Synthesize many, but not all, of their own proteins Replicate through division similar to prokaryotic cell division Chloroplasts can take on other functions ____________ synthesize and store starch in roots and tubers ____________ have pigments and give fruits ripened color
  • 26. 26 Centrioles - are part of specialized region of the cell called the centrosome (cell center) found in animals and most protists the centrioles are involved in the production of microtubules microtubules have many functions including moving chromosomes during cell division centriole structure - 9 triplets of microtubules surrounding a hollow core - ________________ similar to the basal body of flagella
  • 27. 27 Cytoskeleton - scaffolding of proteins that transport materials, position and move organelles, maintain and change cell shape, and organize enzymes into functional associations 3 components - actin filaments, microtubules, and intermediate filaments all are polymers of smaller protein subunits - lengthen through addition of polymer subunits, shorten through ______________
  • 28. 28 actin filaments - involved in cell movements and in membrane deformations - smallest components of the cytoskeleton microtubules - hollow tubes made of proteins called tubulins responsible for cell movements and movements of organelles within the cytoplasm, movement of chromosomes during cell division - largest components of the cytoskeleton intermediate filaments - 8 stranded protein fibers - play a role in cell structure, anchoring organelles and in transport of materials within the cytoplasm anchor neighboring cells to each other in tissues
  • 29. 29 Flagella and Cilia - cellular appendages can propel cells or propel materials over the cell surface cells that have flagella have few (usually 1 or 2) cells that have cilia have many - covering the surface flagella move with whip-like movements to propel the cell cilia have a more regular stroke and groups of cilia appear to move in unison, resulting in a wave-like motion flagella 5 to 20x longer than cilia
  • 30. 30 Structure has basal body with 9 + 0 structure of microtubules flagellum is membrane bound with pairs of microtubules in a 9+2 pattern each pair of tubules has short arms of another protein - dynein - that extend to neighboring tubules movement of the flagellum is produced by sliding of the microtubule pairs
  • 31. 31 Plant Cells have, in addition to the collection of organelles found in other groups, a central vacuole for storage and for producing ________ pressure inside the the cell. The central vacuole is usually filled with water and solutes. A high solute concentration draws water into the vacuole, expanding the vacuole and the cell. Because plant cells are enclosed by a cell wall, the expansion of the vacuole can exert pressure on the cell without causing the cell to burst.
  • 32. 32 Plants have cell walls made of cellulose. During cell division plant cells build dividing walls between the two new cells called the cell plate. An adhesive layer - the middle lamella - is laid down between the new cell walls Cell walls can be thickened through the addition of materials to the inside of the primary cell wall.
  • 33. 33 Where did Eukaryotic Cells come from? The oldest rocks with evidence of fossil cells date to 3.5 billion years. The oldest rocks with cells large and complex enough to be eukaryotic date to 1.0 billion years. For 2.5 billion years only prokaryotic cells existed on earth. The best hypothesis for the origin of eukaryotic cells was proposed by Lynn Margulis in the early 1970s. This hypothesis is now called the _____________ ___________. Eukaryotic cells appear to be the product of a collaboration among different types of prokaryotic cells. Some prokaryotic cells became the host for other prokaryotic cells that lived inside them. Some of the complex organelles of eukaryotes provide evidence for this theory.
  • 34. 34 Mitochondria and chloroplasts appear to be the direct descendants of energy producing bacteria. Mitochondria are the descendants of bacteria that were capable of oxidative respiration. Chloroplasts are the descendants of photosynthetic bacteria.
  • 35. 35 Evidence: Both have their own DNA and ribosomes that are similar to those found in prokaryotes. Both make many of their own proteins and both multiply in a fashion similar to prokaryotic cell division. Both are double membrane organelles - the inner membrane descended from the ancestral guest cell, and the outer membrane descended from the vacuole membrane that was formed around the guest. Other organelles may also be the product of endosymbiosis. Some centrioles and basal bodies have naked DNA as part of their structure. There are many modern examples of endosymbiosis involving organisms that can live together or live independently. The same was probably true of the ancestors of endosymbiotic organelles in the distant past.