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University of Babylon
College of Information Technology
Department of Software
β€œGlaucoma Progression Detection Based on Retinal
Features β€œ
A Thesis
Submitted to the Council of the College of Information Technology, University of
Babylon, in Partial Fulfillment of the Requirements for the Degree Master of
Software Department
Prepared by
Wesam Adnan AL-Muswi
Supervised by
Dr. Enas Hamood Al-Saadi
Overview
οƒΌ Introduction
οƒΌ Problem Statement
οƒΌ Challenges of the Research
οƒΌ The Aim of Thesis
οƒΌ Main Contribution of Thesis
οƒΌ The Proposed System
οƒΌ Preprocessing Stage
οƒΌ Segmentation Stage
οƒΌ Features Extraction Stage
οƒΌ Classification Stage
οƒΌ Evolution Measures
οƒΌ Results and Discussion
οƒΌ Published Paper
οƒΌ Conclusions
οƒΌ Future Works
οƒΌ References
Glaucoma is the second most common eye condition that causes neurodegenerative
disease among eye diseases. The main reported cause of this condition was
inappropriate intraocular pressure within the human eye.
Content-based image analysis uses computer vision and content-based image analysis
algorithms to identify disorders. Fundus images captured by a fundus camera are used
to find anomalies in human eyes.
 Glaucoma does not show symptoms in the early stages, and if not treated it can lead
to complete blindness. Early detection of glaucoma can avoid irreversible vision loss.
 Due to increased intraocular pressure (IOP) and damage to the optic nerve, glaucoma
leads to permanent vision loss. Glaucoma is often referred to as the "quiet vision thief"
because early-stage symptoms are vague and difficult to measure. If the development
of glaucoma is not prevented in its early stages, the optic nerve will be severely
destroyed, leading to permanent blindness
οƒ˜ Introduction
 To avoid permanent vision loss from glaucoma, fundus images can be easily
obtained. Next, information extraction from digital image analysis is used to detect eye
diseases from glaucoma.
 All scientific and applied analyses confirm that glaucoma is first causer of humans'
visual impairment. Glaucoma is a common eye disease caused by increased pressure of
the aqueous humor in the eye, called intraocular pressure (IOP) [1]. Glaucoma leads to
an increase in eye pressure. The documented version of the statistics of the
World Health Organization denotes that the number of glaucoma infections in
2010 was 60.5 million [3], and more than 64 million cases were recorded in
2013 [4], due to age and population expansion. The number of glaucoma
patients in the world is expected to rise to 80 million in 2020, and about 111.8
million by 2040 [5]. Episodic thoughts appear in their phases, polls, surveys,
sentences, thinking, collecting and sleeping sickness
previously learned about the danger of disease day after day, so it is
possible to use the proposed system in conjunction with ophthalmologists in
hospitals to diagnose the disease in the first case of it in order to treat it before
it becomes complicated and leads to blindness of the patient and also to reduce
the time of diagnosis by doctors. It is necessary to work on detecting glaucoma
and its early stages in order to detect early effective treatment that protects
against vision loss. The current method of manually detecting and evaluating
glaucoma is expensive and requires a trained ophthalmologist.
οƒ˜ Problem Statement
1. Accurately defining the ROI region by Channel of the distinctive color
according to the existing color gamut of the dataset images.
2. Early diagnosis and knowledge of the level of disease for primary, intermediate
and advanced cases.
3. Confirm the size of the cup and the interval called the rim in the affected eye
and compare it with the eye of uninfected people in order to be sure of the
infection and the stage of infection accurately.
4. Ensure that the OC is fragmented due to the high density of BV in the OC
region and that glaucoma changes the shape of the OC region
5. Optical calyx segmentation due to the density of blood vessels covering parts
of the calyx and the gradual change in color intensity between the tip and the
cup.
6. Real time prediction.
7. The best fundus image preprocessing without losing image detail and avoiding
the production of artificial borders.
οƒ˜ Research Challenges
1. Building a prediction system to identify the person who needs examination to detect
and diagnose the level of glaucoma (early, moderate, and severe). The examination
procedure will depend on the fundus image of the affected person).
2. Proposed algorithm has been developed for Inferior, Superior, Temporal, and Nasal
Quadrant Mask Creation for Neuro Retinal Rim and Blood Vessels, in order to get
better feature extraction and reduce execution time.
3. Proposed algorithm has been developed for scattering features random, in order to
train Artificial Intelligence algorithms more efficiently and effectively to prepare
them for upcoming complex cases.
4. Reducing time problems to the ability to manage more cases of glaucoma, as the
time spent is less than Four seconds, which means that the system can be used in
real time.
5. Signs of the disease can diagnose in the fundus image by an efficient algorithm.
6. Proposed algorithm for identifying and segmentation of optical disc and optical
cup.
7. Increasing the number of extracted features due to reaching the score for more
accuracy and focusing on some of these features more than the rest.
8. Use machine-learning concepts to classify the retina image in order to diagnose
glaucoma and machine-learning based neural network models and evaluate its
performance.
οƒ˜ The Aim of Thesis
οƒ˜ Main Contributions of Thesis
1. The development of a single system that can diagnose glaucoma cases and their
levels according to the approved characteristics such as the optic disc, blood
vessels and other parts of the eye that may be affected by the aforementioned
disease.
2. Good results of the system compared to the results of previous researchers.
3. Short time to manage and implement more cases of glaucoma, the time is less than
(2.7) seconds, which means that the system is used in real time
4. A fully automated localization method for the optic disc can give robust and
accurate results.
οƒ˜ The Proposed System
οƒ˜ Preprocessing Stage
This step is very important in order to use later for comparison in the second
phase, Standard Deviation (SD) for entire cropped image is calculated according to
following equation (2.18).Where β€œg” is the pixel value that is ranged between 0 and
255, β€œL” is the color level that is ranged also between 0 and 255, β€œαΈ‘β€ is the mean of g,
β€œP (g)” is the probability of g.
For OD identification and segmentation, the red channel carries more
detailed information than the other channels: as a result, extract the red channel
from the cropped image
R π‘š, 𝑛, 𝑐 = RGB m, 𝑛, RedChannel (3.1)
Where β€œc” is the color channels, β€œm, n” index’s.
When comparing the red channel image with a specific threshold and using the
maximum intensity of the red channel as a threshold, the suggested work uses threshold
intensity to establish the OD position.
β€œMax Intensity” is often 255,β€œBlack White ” is threshold operation, And the reason I
subtracted the value of "4" is because some parts of the optical disc have an intensity less
than the maximum by a very small value
To remove unwanted objects, the resulting binary image is labeled with an eight-connections
and removed all connected components (objects)that have fewer than (1000) pixels.
The final step in this section is the elimination of the objects which are
smaller than OD and keeping the larger object which is often the OD,
The image are downsized in this step to lower the computing cost and create a
uniform scale for all images to 400 * 400 pixels. As in this equation.
πΆπ‘Ÿπ‘œπ‘ πΌπ‘šπ‘Žπ‘”π‘’π‘  = π‘–π‘šπ‘π‘Ÿπ‘œπ‘ πΌπ‘›π‘π‘’π‘‘πΌπ‘šπ‘Žπ‘”π‘’, 𝐿1 βˆ— π‘š, 𝐿2 βˆ— 𝑛 π‘Š1 βˆ— π‘š, π‘Š2 βˆ— 𝑛 2.6
οƒ˜ Optic Disk Segmentation
The OD region could be very clearly seen
emphasized in the red channel of the RGB
fundus picture, hence this channel was
removed. OD can see as the brightest portion
in the "Red" channel compared with the other
channels.
The closing procedure is typically used
to close small gaps and fills in background
areas of a picture when a suitable structural
element can be located that fits the regions
that need to be kept. The size used of the
structuring element (SE) is 10 with disk-
shape.
The average filter was used to lessen the degree
of intensity fluctuation between a pixel and its
neighbors. This process will enhance the
histogram of the image and blur any residual
vessel edges.
This step is very important in order to be
used to compare the image from which the
optic disc can be extracted accurately without
additional processing.
𝑆𝐷𝑔 = 𝛴𝑔=0
πΏβˆ’1
𝑔 βˆ’ 𝑔 )2
𝑝 𝑔 2.18
In the Threshold method, extraction of an
object is done. OD is extracted from its
background by assigning an intensity value
"T" which is known as a threshold value.
Intensity value "T" is assigned such that pixel
is either classified as an OD point or
background point.
Threshold 𝑂𝐷 =
1 𝑖𝑓 𝑂𝐷 π‘…π‘’π‘‘πΆβ„Žπ‘Ž. > π‘€π‘Žπ‘₯ 𝐼𝑛𝑑𝑒𝑛𝑠𝑖𝑑𝑦 – 𝑆𝐷 𝑅𝑒𝑑 πΆβ„Žπ‘Ž . 2
0 π‘œπ‘‘β„Žπ‘’π‘Ÿπ‘€π‘–π‘ π‘’ … … … … … … … … … … … … . .
3.3
Two issues will arise if there are gaps in the
resulting image, particularly in the OD region:
The first is the inaccuracy of colors retrieval to
the OD, which is an important step for
extracting the OC or extracting the blue
channel for later use in segmentation the OD
accurately, the second problem is a defect in the
calculation of OD area, therefore.
The opening process eliminates the smal
l items from the foreground of an image, allo
wing for the reconstruction of object contours
using the pixels that were removed that were
smaller than the structuring element. The
appropriate structuring element radius is (5 to
15) with disc shape.
To get rid of any undesired objects in the image
the true colors (red, green, and blue) of the retin
al image are recovered to the OD binary image t
hat was segmented in the previous phase. Which
have standard deviation more than or equal 65.5
or to segment OC and BV if the standard
deviationof the image was less than 65.5 .
Among the three true color channels in the
retina image, the blue channel will be suitable
for detecting every portion unrelated to the OD
B (π‘š,𝑛,𝑐) =OD (m,𝑛,Blue Channel) (3.4)
Standard Deviation of the entire blue
channel is calculated. Where β€œOD Blue Channel” is
the OD image with a blue channel, β€œSD Blue
Channel” is the standard deviation of the blue
channel. And the main reason for doubling
(𝑆𝐷 𝐡𝑙𝑒𝑒 πΆβ„Žπ‘Žπ‘›π‘›π‘’π‘™ *2) the SD value is to neglect of
the pixels with a low color value. As in
Equation.
BlackWhite 𝑂𝐷 =
1 𝑖𝑓 𝑂𝐷 𝐡𝑙𝑒𝑒 πΆβ„Žπ‘Žπ‘›π‘›π‘’π‘™ > 𝑆𝐷 𝐡𝑙𝑒𝑒 πΆβ„Žπ‘Žπ‘›π‘›π‘’π‘™ βˆ— 2
0 π‘œπ‘‘β„Žπ‘’π‘Ÿπ‘€π‘–π‘ π‘’ … … … … … … … … … … … … . .
3.5
fill holes’ step is removing by choosing
the larger region, then applying
morphological opening with structuring
element as disc shape and small size a s 5.
To improve OD segmentation, some
morphological with structuring element as
disc shape and the size is (5 or 10).
οƒ˜ Optic Cup Segmentation
the Optic Cup segmentation is more difficult than segmentation of OD
because of the high density of BV in the OC region and glaucoma changes the
shape of the OC region.
The adjustment is performed as shown in the following equation if the standard deviation
of the image is less than 60, each channel of the image is assigned value as low and high input
as shown in the following equation (2.8):The values are 0.2, 0.2, 0; 0.6, 0.8, 0.5 respectively.
Otherwise, the adjustment is performed on the entire image by certain value for all channels
without customizing anyone as shown in the following equation (2.9):The values are 0.1, 0.9
respectively.
The red channel covered
the full area of OD in the
segmented image of OD, and since
the blue channel contains a little
information, the green channel is
the better channel for OC
extraction. The OC region is
brighter in the OD region with the
presence of the blood vessels.
>>>The standard deviation for the
entire green channel is determined
for the OC extraction threshold.
Where β€œMax Intensity” is often
255, β€œSD Green Channel” is the
standard deviation of the green
channel. And the value 3 was used
for the division. This came from
the many experiments that were
conducted on a set of dataset
images, as this value is one of the
best values that give better results.
Closing operation is used to
identify the binary image of OC and
eliminate gaps between its
components. The structuring
element must be larger than the
largest gaps in the image. The
optimum size used of the structuring
element(SE) is 50 with a disc shape.
οƒ˜ Blood Vessels Segmentation
The optic disc is the meeting point of the blood vessels, which have a role in the
diagnosis of glaucoma, when the eye suffers from glaucoma, blood vessels will exist
highly in temporal or nasal side.
In order to find the BV of OD
accurately, the images of OD are
cropped and unnecessary black
regions on the image boundaries
are eliminated so that the resulting
image is the region of OD with a
black regionof 20 pixels only.
The red channel has visible
vessels, while the blue channel has
low contrast and little information,
but there is too much noise in this
channel when the blood vessels
are extracted, therefore the green
channel will be better than other
channels.
Bottom-hat filtering is used
to remove the fine features and
little objects from an image,
producing an image with
"objects" or "elements" that are
smaller than the structural
element. The appropriate
structuring element used is a disc
shape of 6.
The average (Mean) of all the
pixels in the resulting image is
determined, and the thresholder
imageβ€”which includes blood
vessels with undesirable objects is
created by applying the following
equation.
Threshold = Mean + 6
The value added to the (Mean)
for the threshold formulation must
be equal or greater than the value of
the structuring element to extract
blood vessels with the lowest
possible noise.
To get rid of unwanted objects
resulting from the thresholder
images, the opening process was
performed using a structuring
element of 10 with a disc shape.
.
οƒ˜ Features Extraction Stage
During this procedure, a number of people extracted features from the
image using a variety of segmentation techniques and textures. These
characteristics are preserved as a vector and are intended to aid in the
classification of the image as either healthy or unhealthy (positive or
negative) the texture-based extraction method used in this study was done
through Gray Level Co-occurrence Matrix (GLCM).
Cup to Disc Ratio (CDR)
This feature is computed by dividing the OC area by the OD area.
Clinically, if the "CDR" value is less than 0.3, the eye is suspected of
healthy, otherwise, it is glaucoma.
CDR =
𝑂𝐢 π΄π‘Ÿπ‘’π‘Ž
OD Area
(2.1)
Computation of the OD Area
In the binary image of the segmented OD, the OD area only
represents the white region, i.e. it is equal to the summation of
pixels which have the value 1 as shown in the following algorithm.
Additionally, in the computation of the OD area, the segmented OC area is
solely represented by the white portion in binary image, as shown in the
following algorithm.
Computation of the OC Area
This symptom is the second glaucoma warning sign. This rule must first
be discovered in order to be put into practice (NRR), then Creation the
(Inferior, Superior, Nasal and Temporal) masks to apply iton the NRR.
Inferior Superior Nasal Temporal (ISNT) Rule
The Neuro Retinal Rim is the area that is between the OD and OC boundaries.
To precisely determine the (NRR), the binary image of OD is cropped and
unnecessary black regions on the image boundaries are eliminated so that the
resulting image is the OD with a black region of 20 pixels only, and then the
following equation is implemented:
NRR = OD Cropped – OC Cropped
The mask pictures serve as an image filter, therefore they are designed to ensure that the
desired quadrant has value 1, or a white zone, and that all other quadrants have value 0, or a
black region.
The image of the mask for each quadrant is created through the exploitation of
the centroid value and array characteristics.
The lowermost quadrant called the inferior quadrant. This quadrant'smask will be
white region and other quadrants are all black regions.
Masks Images Creation
When used with the CDR indication, this indicator can be used to differentiate
between mild and severe disease instances because it is more sensitive than the CDR.
The following equation is applied to RDR computation If RDR value is less than 0.5, the
eye is normal, otherwise, the eye issuspected of glaucoma.
𝑅𝐷𝑅 =
Superior + Inferior π‘œπ‘“ 𝑁𝑅𝑅
Optic Disk Area
2.3
Rim to Disc Ratio (RDR)
𝐡𝑉𝑅 =
BV in inferior regin + BV in Superior region
BV in Temproal regin + BV in Nasal region
2.4
𝐼𝑆𝑁𝑇 π‘…π‘Žπ‘‘π‘–π‘œ =
NRR in inferior regin + NRR in Superior region
NRR in Temproal regin + NRR in Nasal region
2.2
The value of BVR in the glaucomatous eye is less than BVR value in the healthy
eye because of the density of blood vessels in the Temporal and Nasal regions of the
glaucoma eye.
Blood Vessels Ratio (BVR) && ISNT Rule
1. Blood Vessels in Inferior Region
2. Blood Vessels in Superior Region
3. Blood Vessels in Temporal Region
4. Blood Vessels in Nasal Region
* The process of classification depends on the construction of the classification model (classifier) that builds
based on a predefined set of data classes (training data set). The construction of the classifier is called the
learning phase (or training phase) which is a series of stages beginning with preprocessing for input retina
fundus images and ending with building the classifier.
* In the testing phase, the classification model is used to classify the unknown retina fundus image as diseased or
healthy (positive, negative). It is attempted to identify an object (input retina fundus image) by comparing its
features with a given set of features (positive, negative) obtained from the learning stage. The classification
method that is used in this work is supervised learning because all the datasets are pairs consisting of the input
pattern and the desired class. Tow classifiers (ANN and SVM) are used in this work.
οƒ˜Classification Phase
The accuracy of the system has been evaluated utilizing popular
measures such as "Accuracy", "Specificity", "Sensitivity" and
"Precision" . The "Confusion-matrix" supplies more intuition
classes are foreseeing suitably not only the performance of a
predictive model, and which incorrectly, and error type are being
created.
οƒ˜Evaluation Measures
.
οƒ˜ ORIGA Dataset
The dataset used is ORIGAlight ("Online Retinal Fundus Image Database for Glaucoma
Analysis and Research").ORIGAlight dataset contains 650 retinal images with resolution 3072 *
2048 pixels, accompanied by annotations from Singapore Eye Research Institute's experienced
professionals. 168 glaucomatous images and 482 healthy photos are among a large number of
important visual indicators for glaucoma diagnosis. ORIGA is the data set used, and it contains
a proposed objective performance measurement method, focusing on optical disc, cup
segmentation, and cup-to-disc ratio (CDR). Currently, ORIGA (-light) contains 650 retinal
images as table (4.0) annotated by trained professionals from the Singapore Eye Research
Institute. Color fundus images for the training and testing sets consisted of normal and
abnormal retinal images.
οƒ˜ Normalized features extracted from OD of fundus images
The number (1) refers to the
glaucoma eye and (0) refers to the
healthy eye. The main
dependence in the correct
diagnosis of the disease, as well as
in determining the fate of other
fragments to extract and extract
their features, is directly
dependent on the optic disk
segmentation algorithm and is
very important and for rate this
algorithm should be utilizing
"Sensitivity", "Specificity",
"Precision", and "Accuracy" for all
images used.
οƒ˜ Results of Optic Disk Segmentation
The proposed algorithm for optic disc segmentation has high fineness in different conditions
of illumines.
The main basis for identifying the optical disc by the red channel, optic disc in the red channel
is brighter than other channels.
The number of unsegmented for OD accurately was 5, while the number of segmented
accurately was 645, because The term true positive (TP) refers to a pixel which is a part of the
OD for both the manual segmentation, the opposite is called a true negative (TN), which means
that a pixel is outside the OD for the manual segmentation and the proposed segmentation
algorithm. When the pixel belongs to the OD region by the segmentation algorithm while it is
outside the region of OD by the manual segmentation, this case is called false positive (FP),
finally, the term false negative (FN) is used when a pixel belonging to the OD region by them
annual segmentation algorithm considered as outside OD.
οƒ˜ Published Papers
In my recently published research paper that was "Extraction of The Neural Edge and its
Properties for The Retina Infected with Glaucoma ", the proposed method was applied to
4 different datasets containing eye diseases such as Glaucoma, the results were promising
and excellent compared to previous research results.
Research Dataset Accuracy
Al-Bander et al.in
2018
MESSIDOR 97%
Hafsa Ahmed * et al.
April 22-24, 2014
DMED, FAU 97.5%
Kanchana and Naga
Kiran, in 2019
DIARETDB1
With 60 image
94%
Rutuja Shinde.2021 RIM-ONE,DRIVE 98.6%
Sharma et al, In
2019
RIM, DRIONS 95.8%
Hayder et al, In
2020
Origa, Rim-One 3 and
Drishti
97.1%
Juneja et al, In 2020 50 fundus images 95.8%
Proposed method
ORIGA
MESSIDOR
RIM
DRISTHI
98.9%
96.5%
95.4%
93.2%
97.5
97.5
94
98.6
97.1
98.6
95.8
95.8
95.4
97.1
98.9
97.1
93.2
90 92 94 96 98 100
AL-Bander
Hafsa Ahmed
Kanchana and
Naga
Rutuja Shinde
Sharma
Hayder
Proposed
method
Axis Title
Graphical Representation of Accuracy
DRISTHI Origa RIM DRIVE RIM-ONE DIARETDB1 FAU DMED
οƒ˜ Result of Segmented Optic Cup && Blood vessels
The four definition of the terms ("TP", "TN","FN" and "FP" ) used with the "Optic Disk"
segmentation applied with the "Optic Cup", but the difference is that the region is the "Optic
Cup" instead of "Optic Disk".
confusion matrix of blood vessels segmentation, where "True-Positive (TP)" signs to the
"Positive" result of the right identified blood vessel, "True- Negative (TN)" signs to the
"Negative" result of the right identified background blood vessel, "False-Positive (FP)"
indicates the positive result for background Vessels incorrectly classified as a blood vessel,
"False- Negative (FN)" indicates the positive result for vessel pixels incorrectly classified as
non-vessel. Positive
Prediction
Negative
Prediction
Positive Class 645 3
Negative Class 1 1
οƒ˜ Result of Segmented CDR && RDR
The RDR computation If RDR value is less than 0.5, the eye is normal, otherwise, the eye
issuspected of glaucoma.
Positive
Prediction
Negative
Prediction
Positive Class 36 132
Negative Class 35 447
the stage Cup to Disk Ratio "True-Positive (TP)" signs to the number of glaucoma images
considered as glaucoma according to the (CDR), "True- Negative (TN)" signs to the number of
healthy images considered as healthy according to the (CDR), "False-Positive (FP)" indicates the
number of healthy images considered as glaucoma by the (CDR) indicator, "False- Negative
(FN)" indicates the number of glaucoma images considered as healthy following the (CDR)
indicator.
οƒ˜ Result of Segmented ISNT Rule
1. Results of Neuro Retinal Rim (NRR)
The boundary between Optic Disk and Optic Cup (the inner boundary) is NRR.
2. Results of ISNT Regions
The (ISNT) generated masks for (Superior, Nasal, Inferior and Temporal)
regions were applied on the resulted NRR .
Positive
Prediction
Negative
Prediction
Positive Class 143 44
Negative Class 20 443
displays confusion matrix for diagnosing
glaucoma using ISNT rule, where (TP) refers
to the number of glaucoma images that not
follow the ISNT rule, (TN) refers to the
number of healthy images that follow the
ISNT rule, (FP) indicates the number of
healthy images that not follow the ISNT rule,
(FN) indicates the number of glaucoma
images that follow the ISNT rule.
οƒ˜ Result of ISNT Regions for Blood Vessels
The Confusion matrix of glaucoma
diagnosis by (BVR),Where (TP) refers to
the number of glaucoma images that have
blood vessels in Nasal or Temporal region
larger than blood vessels in Inferior or
Superior region, (TN) refers to the number
of healthy images that have blood vessels in
Nasal or Temporal region less than blood
vessels in Inferior or Superior region, (FP)
indicates the number of healthy images that
have blood vessels in Nasal or Temporal
region larger than blood vessels in Inferior
or Superior region, (FN) indicates the
number of glaucoma images that have
blood vessels in Nasal or Temporal region
less than blood vessels in Inferior or
Superior region
οƒ˜ Result of retinal image classification using ANN
Where (TP) is the glaucomatous
images number classified as
correct,(TN) is the healthy images
number classified as correct,(FP) is
the healthy images number
classified as incorrect,(FN) is the
glaucomatous images number
classified as incorrect. the
confusion matrix and performance
measures of β€œ8” features utilized
ANN classifier.
οƒ˜ Result of retinal image classification using SVM
The "RBF" kernel function is applied because it is better for more
accurate with non-linear features.
Positive
Prediction
Negative
Prediction
Positive Class 114 3
Negative Class 2 331
Performance measures are as follows: Accuracy is 98.8%, Sensitivity is 97.4, Specificity
is 99.3, Precision is 98.2, and Area under Curve (AUC) is 98.4
οƒ˜ Comparison of the proposed method's efficiency with other algorithms
οƒ˜ Result of Glaucoma Progression
Where "TP" is the number of "early"
fundus images classified as "early", "TN"
is the number of "non-early" fundus
images classified as "non-early", "FP" is
the number of "early" fundus images
classified as "non-early" ("False-
Positives") and "FN" is the number of
"non-early" fundus images
οƒ˜Results of Execution Time
The proposed algorithm to classify any input of RGB retinal image requested
an average time of fewer than (2.7) seconds to option result a positive or negative
,in fact the time include all features such as (OC,OD ,ROI,NRR,BV,FE),and test
time
.
οƒ˜The Published Paper
1. The evaluation of the proposed system was done utilizing "SVM" and "ANN" classifiers on
the common dataset ("ORIGA") sensitivity, specificity and accuracy have been 95.3 with
(ANN) and 98.9 with (SVM) respectively.
2. The accuracy of the work detect for the levels determine of glaucoma (early, moderate,
severe) by dependence on the features is 99.8 with decision tree algorithm.
3. Average time consume has (2.7) seconds which means the system can be used in the
execution real-time.
4. Automatic techniques aiming at segmenting optic disc and cup were innovated based on
image processing approaches that strategically combine techniques based on morphology
and intensity Threshold that seeks to eliminate false positives in order to achieve precise
optic disc segmentation.
5. The planned method is a lot of dependable within the means of selecting features from the
segmented optic disc (CDR, ISNT Rule, RDR, BVR contrast, Correlation, Energy and
Homogeneity (for that it provides promising and correct results. Also, because it relies on all
potential marks for the disease diagnosis.
6. The algorithm for recognizing Blood Vessels networks in the optic disc utilizes a Watershed
segmentation or a bottom-hat transform and the mean of the image as a threshold focus on
the vessels which leads to increasing the image contrast.
7. Increase the number of features used in the last classification of the decision tree algorithm
is a good case, which achieves higher accuracy than our reliance on a few advantages.
οƒ˜ Conclusion
1. Working on a data set that contains two diseases at the same time, such as diabetes or any other disease
that affects the parts of the eye, in addition to glaucoma, and working to detect glaucoma in the absence
of another disease.
2. Increasing the number of features to obtain more accuracy in classification, such as extracting all blood
vessels and not confining them within the optic disc, and adding Parapapillary atrophy (PPA) as a
feature, which due to glaucoma changed the patient outside the optic disc according to severity stages.
3. Expand the capacity of the proposed system by using a large data set of fundus images up to thousands
of images.
4. Suggest the use of deep learning for classification that can handle large images, such as CNNs.
5. Developing a system that predicts the aforementioned disease before it actually occurs and relying on
some inputs such as genetics, African descent, or other diseases that cause eye pressure or damage to eye
cells, which may cause glaucoma in the patient's near future.
6. Development of work that determines the level of progression of glaucoma and access to the five
stages(normal visual field ,early ,moderate , evere ,end-stage) instead of the three levels used in research.
οƒ˜ Suggestions for Future works
οƒ˜ References
[1]. Sahu, S. et al. (2019) β€˜Image Processing Based Automated Glaucoma Detection Techniques and Role of De-Noising: A Technical
Survey’, Handbook of Multimedia Information Security: Techniques and Applications, pp. 359–375.
[2]. Fatemeh Maadi, Neda Faraji, Mohammadreza Hassannejad Bibalan. "A Robust Glaucoma Screening Method for Fundus Images
Using Deep Learning Technique" 2020 27th National and 5th International Iranian Conference on Biomedical Eng. (ICBME), 2020.
[3]. Hafsah Ahmad, Abubakar Yamin, Aqsa Shakeel, Syed Ormer Gillani, Umer Ansari."Detection of glaucoma using retinal
fundus images" , 2014 .
[4]. Mvoulana, A., Kachouri, R. and Akil, M. (2019) β€˜Fully automated method for glaucoma screening using robust optic nerve head
detection and unsupervised segmentation based cup-to-disc ratio. Elsevier Ltd, 77. doi: 10.1016/j.compmedimag.2019.101643
[5]. paper.ijcsns.org.
[6]. Law Kumar Singh, Pooja, Hitendra Garg."Detection of Glaucoma in Retinal Fundus Images Using Fast Fuzzy C means
clustering approach" , (ICCCIS), 2019.
[7]. Rutuja Shinde. "Glaucoma detection in retinal fundus images using U-Net and supervised machine learning algorithms”,
IntelligenceBased Medicine, 2021.
[8]. Rutuja Shinde. "Glaucoma detection in retinal fundus images using U-Net and supervised machine learning
algorithms”,IntelligenceBased Medicine, 2021.
[9]. Rutuja Shinde. "Glaucoma detection in retinal fundus images using U-Net and supervised machine learning algorithms" ,
IntelligenceBased Medicine, 2021.
[10]. Hayder Jaber Samawi, Ali Yakoob Al-Sultan, Enas Hamood Al-Saadi. "Optic Disc Segmentation in Retinal Fundus Images Using
Morphological Techniques and Intensity Threshold" and (CSASE), 2020.
 Glaucoma progressiondetection based on Retinal Features.pptx

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Glaucoma progressiondetection based on Retinal Features.pptx

  • 1. University of Babylon College of Information Technology Department of Software β€œGlaucoma Progression Detection Based on Retinal Features β€œ A Thesis Submitted to the Council of the College of Information Technology, University of Babylon, in Partial Fulfillment of the Requirements for the Degree Master of Software Department Prepared by Wesam Adnan AL-Muswi Supervised by Dr. Enas Hamood Al-Saadi
  • 2. Overview οƒΌ Introduction οƒΌ Problem Statement οƒΌ Challenges of the Research οƒΌ The Aim of Thesis οƒΌ Main Contribution of Thesis οƒΌ The Proposed System οƒΌ Preprocessing Stage οƒΌ Segmentation Stage οƒΌ Features Extraction Stage οƒΌ Classification Stage οƒΌ Evolution Measures οƒΌ Results and Discussion οƒΌ Published Paper οƒΌ Conclusions οƒΌ Future Works οƒΌ References
  • 3. Glaucoma is the second most common eye condition that causes neurodegenerative disease among eye diseases. The main reported cause of this condition was inappropriate intraocular pressure within the human eye. Content-based image analysis uses computer vision and content-based image analysis algorithms to identify disorders. Fundus images captured by a fundus camera are used to find anomalies in human eyes.  Glaucoma does not show symptoms in the early stages, and if not treated it can lead to complete blindness. Early detection of glaucoma can avoid irreversible vision loss.  Due to increased intraocular pressure (IOP) and damage to the optic nerve, glaucoma leads to permanent vision loss. Glaucoma is often referred to as the "quiet vision thief" because early-stage symptoms are vague and difficult to measure. If the development of glaucoma is not prevented in its early stages, the optic nerve will be severely destroyed, leading to permanent blindness οƒ˜ Introduction
  • 4.  To avoid permanent vision loss from glaucoma, fundus images can be easily obtained. Next, information extraction from digital image analysis is used to detect eye diseases from glaucoma.  All scientific and applied analyses confirm that glaucoma is first causer of humans' visual impairment. Glaucoma is a common eye disease caused by increased pressure of the aqueous humor in the eye, called intraocular pressure (IOP) [1]. Glaucoma leads to an increase in eye pressure. The documented version of the statistics of the World Health Organization denotes that the number of glaucoma infections in 2010 was 60.5 million [3], and more than 64 million cases were recorded in 2013 [4], due to age and population expansion. The number of glaucoma patients in the world is expected to rise to 80 million in 2020, and about 111.8 million by 2040 [5]. Episodic thoughts appear in their phases, polls, surveys, sentences, thinking, collecting and sleeping sickness
  • 5. previously learned about the danger of disease day after day, so it is possible to use the proposed system in conjunction with ophthalmologists in hospitals to diagnose the disease in the first case of it in order to treat it before it becomes complicated and leads to blindness of the patient and also to reduce the time of diagnosis by doctors. It is necessary to work on detecting glaucoma and its early stages in order to detect early effective treatment that protects against vision loss. The current method of manually detecting and evaluating glaucoma is expensive and requires a trained ophthalmologist. οƒ˜ Problem Statement
  • 6. 1. Accurately defining the ROI region by Channel of the distinctive color according to the existing color gamut of the dataset images. 2. Early diagnosis and knowledge of the level of disease for primary, intermediate and advanced cases. 3. Confirm the size of the cup and the interval called the rim in the affected eye and compare it with the eye of uninfected people in order to be sure of the infection and the stage of infection accurately. 4. Ensure that the OC is fragmented due to the high density of BV in the OC region and that glaucoma changes the shape of the OC region 5. Optical calyx segmentation due to the density of blood vessels covering parts of the calyx and the gradual change in color intensity between the tip and the cup. 6. Real time prediction. 7. The best fundus image preprocessing without losing image detail and avoiding the production of artificial borders. οƒ˜ Research Challenges
  • 7. 1. Building a prediction system to identify the person who needs examination to detect and diagnose the level of glaucoma (early, moderate, and severe). The examination procedure will depend on the fundus image of the affected person). 2. Proposed algorithm has been developed for Inferior, Superior, Temporal, and Nasal Quadrant Mask Creation for Neuro Retinal Rim and Blood Vessels, in order to get better feature extraction and reduce execution time. 3. Proposed algorithm has been developed for scattering features random, in order to train Artificial Intelligence algorithms more efficiently and effectively to prepare them for upcoming complex cases. 4. Reducing time problems to the ability to manage more cases of glaucoma, as the time spent is less than Four seconds, which means that the system can be used in real time. 5. Signs of the disease can diagnose in the fundus image by an efficient algorithm. 6. Proposed algorithm for identifying and segmentation of optical disc and optical cup. 7. Increasing the number of extracted features due to reaching the score for more accuracy and focusing on some of these features more than the rest. 8. Use machine-learning concepts to classify the retina image in order to diagnose glaucoma and machine-learning based neural network models and evaluate its performance. οƒ˜ The Aim of Thesis
  • 8. οƒ˜ Main Contributions of Thesis 1. The development of a single system that can diagnose glaucoma cases and their levels according to the approved characteristics such as the optic disc, blood vessels and other parts of the eye that may be affected by the aforementioned disease. 2. Good results of the system compared to the results of previous researchers. 3. Short time to manage and implement more cases of glaucoma, the time is less than (2.7) seconds, which means that the system is used in real time 4. A fully automated localization method for the optic disc can give robust and accurate results.
  • 10. οƒ˜ Preprocessing Stage This step is very important in order to use later for comparison in the second phase, Standard Deviation (SD) for entire cropped image is calculated according to following equation (2.18).Where β€œg” is the pixel value that is ranged between 0 and 255, β€œL” is the color level that is ranged also between 0 and 255, β€œαΈ‘β€ is the mean of g, β€œP (g)” is the probability of g. For OD identification and segmentation, the red channel carries more detailed information than the other channels: as a result, extract the red channel from the cropped image R π‘š, 𝑛, 𝑐 = RGB m, 𝑛, RedChannel (3.1) Where β€œc” is the color channels, β€œm, n” index’s. When comparing the red channel image with a specific threshold and using the maximum intensity of the red channel as a threshold, the suggested work uses threshold intensity to establish the OD position. β€œMax Intensity” is often 255,β€œBlack White ” is threshold operation, And the reason I subtracted the value of "4" is because some parts of the optical disc have an intensity less than the maximum by a very small value To remove unwanted objects, the resulting binary image is labeled with an eight-connections and removed all connected components (objects)that have fewer than (1000) pixels. The final step in this section is the elimination of the objects which are smaller than OD and keeping the larger object which is often the OD, The image are downsized in this step to lower the computing cost and create a uniform scale for all images to 400 * 400 pixels. As in this equation. πΆπ‘Ÿπ‘œπ‘ πΌπ‘šπ‘Žπ‘”π‘’π‘  = π‘–π‘šπ‘π‘Ÿπ‘œπ‘ πΌπ‘›π‘π‘’π‘‘πΌπ‘šπ‘Žπ‘”π‘’, 𝐿1 βˆ— π‘š, 𝐿2 βˆ— 𝑛 π‘Š1 βˆ— π‘š, π‘Š2 βˆ— 𝑛 2.6
  • 11. οƒ˜ Optic Disk Segmentation The OD region could be very clearly seen emphasized in the red channel of the RGB fundus picture, hence this channel was removed. OD can see as the brightest portion in the "Red" channel compared with the other channels. The closing procedure is typically used to close small gaps and fills in background areas of a picture when a suitable structural element can be located that fits the regions that need to be kept. The size used of the structuring element (SE) is 10 with disk- shape. The average filter was used to lessen the degree of intensity fluctuation between a pixel and its neighbors. This process will enhance the histogram of the image and blur any residual vessel edges. This step is very important in order to be used to compare the image from which the optic disc can be extracted accurately without additional processing. 𝑆𝐷𝑔 = 𝛴𝑔=0 πΏβˆ’1 𝑔 βˆ’ 𝑔 )2 𝑝 𝑔 2.18 In the Threshold method, extraction of an object is done. OD is extracted from its background by assigning an intensity value "T" which is known as a threshold value. Intensity value "T" is assigned such that pixel is either classified as an OD point or background point. Threshold 𝑂𝐷 = 1 𝑖𝑓 𝑂𝐷 π‘…π‘’π‘‘πΆβ„Žπ‘Ž. > π‘€π‘Žπ‘₯ 𝐼𝑛𝑑𝑒𝑛𝑠𝑖𝑑𝑦 – 𝑆𝐷 𝑅𝑒𝑑 πΆβ„Žπ‘Ž . 2 0 π‘œπ‘‘β„Žπ‘’π‘Ÿπ‘€π‘–π‘ π‘’ … … … … … … … … … … … … . . 3.3 Two issues will arise if there are gaps in the resulting image, particularly in the OD region: The first is the inaccuracy of colors retrieval to the OD, which is an important step for extracting the OC or extracting the blue channel for later use in segmentation the OD accurately, the second problem is a defect in the calculation of OD area, therefore. The opening process eliminates the smal l items from the foreground of an image, allo wing for the reconstruction of object contours using the pixels that were removed that were smaller than the structuring element. The appropriate structuring element radius is (5 to 15) with disc shape. To get rid of any undesired objects in the image the true colors (red, green, and blue) of the retin al image are recovered to the OD binary image t hat was segmented in the previous phase. Which have standard deviation more than or equal 65.5 or to segment OC and BV if the standard deviationof the image was less than 65.5 . Among the three true color channels in the retina image, the blue channel will be suitable for detecting every portion unrelated to the OD B (π‘š,𝑛,𝑐) =OD (m,𝑛,Blue Channel) (3.4) Standard Deviation of the entire blue channel is calculated. Where β€œOD Blue Channel” is the OD image with a blue channel, β€œSD Blue Channel” is the standard deviation of the blue channel. And the main reason for doubling (𝑆𝐷 𝐡𝑙𝑒𝑒 πΆβ„Žπ‘Žπ‘›π‘›π‘’π‘™ *2) the SD value is to neglect of the pixels with a low color value. As in Equation. BlackWhite 𝑂𝐷 = 1 𝑖𝑓 𝑂𝐷 𝐡𝑙𝑒𝑒 πΆβ„Žπ‘Žπ‘›π‘›π‘’π‘™ > 𝑆𝐷 𝐡𝑙𝑒𝑒 πΆβ„Žπ‘Žπ‘›π‘›π‘’π‘™ βˆ— 2 0 π‘œπ‘‘β„Žπ‘’π‘Ÿπ‘€π‘–π‘ π‘’ … … … … … … … … … … … … . . 3.5 fill holes’ step is removing by choosing the larger region, then applying morphological opening with structuring element as disc shape and small size a s 5. To improve OD segmentation, some morphological with structuring element as disc shape and the size is (5 or 10).
  • 12. οƒ˜ Optic Cup Segmentation the Optic Cup segmentation is more difficult than segmentation of OD because of the high density of BV in the OC region and glaucoma changes the shape of the OC region. The adjustment is performed as shown in the following equation if the standard deviation of the image is less than 60, each channel of the image is assigned value as low and high input as shown in the following equation (2.8):The values are 0.2, 0.2, 0; 0.6, 0.8, 0.5 respectively. Otherwise, the adjustment is performed on the entire image by certain value for all channels without customizing anyone as shown in the following equation (2.9):The values are 0.1, 0.9 respectively. The red channel covered the full area of OD in the segmented image of OD, and since the blue channel contains a little information, the green channel is the better channel for OC extraction. The OC region is brighter in the OD region with the presence of the blood vessels. >>>The standard deviation for the entire green channel is determined for the OC extraction threshold. Where β€œMax Intensity” is often 255, β€œSD Green Channel” is the standard deviation of the green channel. And the value 3 was used for the division. This came from the many experiments that were conducted on a set of dataset images, as this value is one of the best values that give better results. Closing operation is used to identify the binary image of OC and eliminate gaps between its components. The structuring element must be larger than the largest gaps in the image. The optimum size used of the structuring element(SE) is 50 with a disc shape.
  • 13. οƒ˜ Blood Vessels Segmentation The optic disc is the meeting point of the blood vessels, which have a role in the diagnosis of glaucoma, when the eye suffers from glaucoma, blood vessels will exist highly in temporal or nasal side. In order to find the BV of OD accurately, the images of OD are cropped and unnecessary black regions on the image boundaries are eliminated so that the resulting image is the region of OD with a black regionof 20 pixels only. The red channel has visible vessels, while the blue channel has low contrast and little information, but there is too much noise in this channel when the blood vessels are extracted, therefore the green channel will be better than other channels. Bottom-hat filtering is used to remove the fine features and little objects from an image, producing an image with "objects" or "elements" that are smaller than the structural element. The appropriate structuring element used is a disc shape of 6. The average (Mean) of all the pixels in the resulting image is determined, and the thresholder imageβ€”which includes blood vessels with undesirable objects is created by applying the following equation. Threshold = Mean + 6 The value added to the (Mean) for the threshold formulation must be equal or greater than the value of the structuring element to extract blood vessels with the lowest possible noise. To get rid of unwanted objects resulting from the thresholder images, the opening process was performed using a structuring element of 10 with a disc shape.
  • 14. . οƒ˜ Features Extraction Stage During this procedure, a number of people extracted features from the image using a variety of segmentation techniques and textures. These characteristics are preserved as a vector and are intended to aid in the classification of the image as either healthy or unhealthy (positive or negative) the texture-based extraction method used in this study was done through Gray Level Co-occurrence Matrix (GLCM). Cup to Disc Ratio (CDR) This feature is computed by dividing the OC area by the OD area. Clinically, if the "CDR" value is less than 0.3, the eye is suspected of healthy, otherwise, it is glaucoma. CDR = 𝑂𝐢 π΄π‘Ÿπ‘’π‘Ž OD Area (2.1) Computation of the OD Area In the binary image of the segmented OD, the OD area only represents the white region, i.e. it is equal to the summation of pixels which have the value 1 as shown in the following algorithm. Additionally, in the computation of the OD area, the segmented OC area is solely represented by the white portion in binary image, as shown in the following algorithm. Computation of the OC Area This symptom is the second glaucoma warning sign. This rule must first be discovered in order to be put into practice (NRR), then Creation the (Inferior, Superior, Nasal and Temporal) masks to apply iton the NRR. Inferior Superior Nasal Temporal (ISNT) Rule The Neuro Retinal Rim is the area that is between the OD and OC boundaries. To precisely determine the (NRR), the binary image of OD is cropped and unnecessary black regions on the image boundaries are eliminated so that the resulting image is the OD with a black region of 20 pixels only, and then the following equation is implemented: NRR = OD Cropped – OC Cropped The mask pictures serve as an image filter, therefore they are designed to ensure that the desired quadrant has value 1, or a white zone, and that all other quadrants have value 0, or a black region. The image of the mask for each quadrant is created through the exploitation of the centroid value and array characteristics. The lowermost quadrant called the inferior quadrant. This quadrant'smask will be white region and other quadrants are all black regions. Masks Images Creation When used with the CDR indication, this indicator can be used to differentiate between mild and severe disease instances because it is more sensitive than the CDR. The following equation is applied to RDR computation If RDR value is less than 0.5, the eye is normal, otherwise, the eye issuspected of glaucoma. 𝑅𝐷𝑅 = Superior + Inferior π‘œπ‘“ 𝑁𝑅𝑅 Optic Disk Area 2.3 Rim to Disc Ratio (RDR) 𝐡𝑉𝑅 = BV in inferior regin + BV in Superior region BV in Temproal regin + BV in Nasal region 2.4 𝐼𝑆𝑁𝑇 π‘…π‘Žπ‘‘π‘–π‘œ = NRR in inferior regin + NRR in Superior region NRR in Temproal regin + NRR in Nasal region 2.2 The value of BVR in the glaucomatous eye is less than BVR value in the healthy eye because of the density of blood vessels in the Temporal and Nasal regions of the glaucoma eye. Blood Vessels Ratio (BVR) && ISNT Rule 1. Blood Vessels in Inferior Region 2. Blood Vessels in Superior Region 3. Blood Vessels in Temporal Region 4. Blood Vessels in Nasal Region
  • 15. * The process of classification depends on the construction of the classification model (classifier) that builds based on a predefined set of data classes (training data set). The construction of the classifier is called the learning phase (or training phase) which is a series of stages beginning with preprocessing for input retina fundus images and ending with building the classifier. * In the testing phase, the classification model is used to classify the unknown retina fundus image as diseased or healthy (positive, negative). It is attempted to identify an object (input retina fundus image) by comparing its features with a given set of features (positive, negative) obtained from the learning stage. The classification method that is used in this work is supervised learning because all the datasets are pairs consisting of the input pattern and the desired class. Tow classifiers (ANN and SVM) are used in this work. οƒ˜Classification Phase
  • 16. The accuracy of the system has been evaluated utilizing popular measures such as "Accuracy", "Specificity", "Sensitivity" and "Precision" . The "Confusion-matrix" supplies more intuition classes are foreseeing suitably not only the performance of a predictive model, and which incorrectly, and error type are being created. οƒ˜Evaluation Measures
  • 17. . οƒ˜ ORIGA Dataset The dataset used is ORIGAlight ("Online Retinal Fundus Image Database for Glaucoma Analysis and Research").ORIGAlight dataset contains 650 retinal images with resolution 3072 * 2048 pixels, accompanied by annotations from Singapore Eye Research Institute's experienced professionals. 168 glaucomatous images and 482 healthy photos are among a large number of important visual indicators for glaucoma diagnosis. ORIGA is the data set used, and it contains a proposed objective performance measurement method, focusing on optical disc, cup segmentation, and cup-to-disc ratio (CDR). Currently, ORIGA (-light) contains 650 retinal images as table (4.0) annotated by trained professionals from the Singapore Eye Research Institute. Color fundus images for the training and testing sets consisted of normal and abnormal retinal images. οƒ˜ Normalized features extracted from OD of fundus images The number (1) refers to the glaucoma eye and (0) refers to the healthy eye. The main dependence in the correct diagnosis of the disease, as well as in determining the fate of other fragments to extract and extract their features, is directly dependent on the optic disk segmentation algorithm and is very important and for rate this algorithm should be utilizing "Sensitivity", "Specificity", "Precision", and "Accuracy" for all images used. οƒ˜ Results of Optic Disk Segmentation The proposed algorithm for optic disc segmentation has high fineness in different conditions of illumines. The main basis for identifying the optical disc by the red channel, optic disc in the red channel is brighter than other channels. The number of unsegmented for OD accurately was 5, while the number of segmented accurately was 645, because The term true positive (TP) refers to a pixel which is a part of the OD for both the manual segmentation, the opposite is called a true negative (TN), which means that a pixel is outside the OD for the manual segmentation and the proposed segmentation algorithm. When the pixel belongs to the OD region by the segmentation algorithm while it is outside the region of OD by the manual segmentation, this case is called false positive (FP), finally, the term false negative (FN) is used when a pixel belonging to the OD region by them annual segmentation algorithm considered as outside OD. οƒ˜ Published Papers In my recently published research paper that was "Extraction of The Neural Edge and its Properties for The Retina Infected with Glaucoma ", the proposed method was applied to 4 different datasets containing eye diseases such as Glaucoma, the results were promising and excellent compared to previous research results. Research Dataset Accuracy Al-Bander et al.in 2018 MESSIDOR 97% Hafsa Ahmed * et al. April 22-24, 2014 DMED, FAU 97.5% Kanchana and Naga Kiran, in 2019 DIARETDB1 With 60 image 94% Rutuja Shinde.2021 RIM-ONE,DRIVE 98.6% Sharma et al, In 2019 RIM, DRIONS 95.8% Hayder et al, In 2020 Origa, Rim-One 3 and Drishti 97.1% Juneja et al, In 2020 50 fundus images 95.8% Proposed method ORIGA MESSIDOR RIM DRISTHI 98.9% 96.5% 95.4% 93.2% 97.5 97.5 94 98.6 97.1 98.6 95.8 95.8 95.4 97.1 98.9 97.1 93.2 90 92 94 96 98 100 AL-Bander Hafsa Ahmed Kanchana and Naga Rutuja Shinde Sharma Hayder Proposed method Axis Title Graphical Representation of Accuracy DRISTHI Origa RIM DRIVE RIM-ONE DIARETDB1 FAU DMED
  • 18. οƒ˜ Result of Segmented Optic Cup && Blood vessels The four definition of the terms ("TP", "TN","FN" and "FP" ) used with the "Optic Disk" segmentation applied with the "Optic Cup", but the difference is that the region is the "Optic Cup" instead of "Optic Disk". confusion matrix of blood vessels segmentation, where "True-Positive (TP)" signs to the "Positive" result of the right identified blood vessel, "True- Negative (TN)" signs to the "Negative" result of the right identified background blood vessel, "False-Positive (FP)" indicates the positive result for background Vessels incorrectly classified as a blood vessel, "False- Negative (FN)" indicates the positive result for vessel pixels incorrectly classified as non-vessel. Positive Prediction Negative Prediction Positive Class 645 3 Negative Class 1 1 οƒ˜ Result of Segmented CDR && RDR The RDR computation If RDR value is less than 0.5, the eye is normal, otherwise, the eye issuspected of glaucoma. Positive Prediction Negative Prediction Positive Class 36 132 Negative Class 35 447 the stage Cup to Disk Ratio "True-Positive (TP)" signs to the number of glaucoma images considered as glaucoma according to the (CDR), "True- Negative (TN)" signs to the number of healthy images considered as healthy according to the (CDR), "False-Positive (FP)" indicates the number of healthy images considered as glaucoma by the (CDR) indicator, "False- Negative (FN)" indicates the number of glaucoma images considered as healthy following the (CDR) indicator. οƒ˜ Result of Segmented ISNT Rule 1. Results of Neuro Retinal Rim (NRR) The boundary between Optic Disk and Optic Cup (the inner boundary) is NRR. 2. Results of ISNT Regions The (ISNT) generated masks for (Superior, Nasal, Inferior and Temporal) regions were applied on the resulted NRR . Positive Prediction Negative Prediction Positive Class 143 44 Negative Class 20 443 displays confusion matrix for diagnosing glaucoma using ISNT rule, where (TP) refers to the number of glaucoma images that not follow the ISNT rule, (TN) refers to the number of healthy images that follow the ISNT rule, (FP) indicates the number of healthy images that not follow the ISNT rule, (FN) indicates the number of glaucoma images that follow the ISNT rule. οƒ˜ Result of ISNT Regions for Blood Vessels The Confusion matrix of glaucoma diagnosis by (BVR),Where (TP) refers to the number of glaucoma images that have blood vessels in Nasal or Temporal region larger than blood vessels in Inferior or Superior region, (TN) refers to the number of healthy images that have blood vessels in Nasal or Temporal region less than blood vessels in Inferior or Superior region, (FP) indicates the number of healthy images that have blood vessels in Nasal or Temporal region larger than blood vessels in Inferior or Superior region, (FN) indicates the number of glaucoma images that have blood vessels in Nasal or Temporal region less than blood vessels in Inferior or Superior region οƒ˜ Result of retinal image classification using ANN Where (TP) is the glaucomatous images number classified as correct,(TN) is the healthy images number classified as correct,(FP) is the healthy images number classified as incorrect,(FN) is the glaucomatous images number classified as incorrect. the confusion matrix and performance measures of β€œ8” features utilized ANN classifier. οƒ˜ Result of retinal image classification using SVM The "RBF" kernel function is applied because it is better for more accurate with non-linear features. Positive Prediction Negative Prediction Positive Class 114 3 Negative Class 2 331 Performance measures are as follows: Accuracy is 98.8%, Sensitivity is 97.4, Specificity is 99.3, Precision is 98.2, and Area under Curve (AUC) is 98.4 οƒ˜ Comparison of the proposed method's efficiency with other algorithms οƒ˜ Result of Glaucoma Progression Where "TP" is the number of "early" fundus images classified as "early", "TN" is the number of "non-early" fundus images classified as "non-early", "FP" is the number of "early" fundus images classified as "non-early" ("False- Positives") and "FN" is the number of "non-early" fundus images οƒ˜Results of Execution Time The proposed algorithm to classify any input of RGB retinal image requested an average time of fewer than (2.7) seconds to option result a positive or negative ,in fact the time include all features such as (OC,OD ,ROI,NRR,BV,FE),and test time
  • 20. 1. The evaluation of the proposed system was done utilizing "SVM" and "ANN" classifiers on the common dataset ("ORIGA") sensitivity, specificity and accuracy have been 95.3 with (ANN) and 98.9 with (SVM) respectively. 2. The accuracy of the work detect for the levels determine of glaucoma (early, moderate, severe) by dependence on the features is 99.8 with decision tree algorithm. 3. Average time consume has (2.7) seconds which means the system can be used in the execution real-time. 4. Automatic techniques aiming at segmenting optic disc and cup were innovated based on image processing approaches that strategically combine techniques based on morphology and intensity Threshold that seeks to eliminate false positives in order to achieve precise optic disc segmentation. 5. The planned method is a lot of dependable within the means of selecting features from the segmented optic disc (CDR, ISNT Rule, RDR, BVR contrast, Correlation, Energy and Homogeneity (for that it provides promising and correct results. Also, because it relies on all potential marks for the disease diagnosis. 6. The algorithm for recognizing Blood Vessels networks in the optic disc utilizes a Watershed segmentation or a bottom-hat transform and the mean of the image as a threshold focus on the vessels which leads to increasing the image contrast. 7. Increase the number of features used in the last classification of the decision tree algorithm is a good case, which achieves higher accuracy than our reliance on a few advantages. οƒ˜ Conclusion
  • 21. 1. Working on a data set that contains two diseases at the same time, such as diabetes or any other disease that affects the parts of the eye, in addition to glaucoma, and working to detect glaucoma in the absence of another disease. 2. Increasing the number of features to obtain more accuracy in classification, such as extracting all blood vessels and not confining them within the optic disc, and adding Parapapillary atrophy (PPA) as a feature, which due to glaucoma changed the patient outside the optic disc according to severity stages. 3. Expand the capacity of the proposed system by using a large data set of fundus images up to thousands of images. 4. Suggest the use of deep learning for classification that can handle large images, such as CNNs. 5. Developing a system that predicts the aforementioned disease before it actually occurs and relying on some inputs such as genetics, African descent, or other diseases that cause eye pressure or damage to eye cells, which may cause glaucoma in the patient's near future. 6. Development of work that determines the level of progression of glaucoma and access to the five stages(normal visual field ,early ,moderate , evere ,end-stage) instead of the three levels used in research. οƒ˜ Suggestions for Future works
  • 22. οƒ˜ References [1]. Sahu, S. et al. (2019) β€˜Image Processing Based Automated Glaucoma Detection Techniques and Role of De-Noising: A Technical Survey’, Handbook of Multimedia Information Security: Techniques and Applications, pp. 359–375. [2]. Fatemeh Maadi, Neda Faraji, Mohammadreza Hassannejad Bibalan. "A Robust Glaucoma Screening Method for Fundus Images Using Deep Learning Technique" 2020 27th National and 5th International Iranian Conference on Biomedical Eng. (ICBME), 2020. [3]. Hafsah Ahmad, Abubakar Yamin, Aqsa Shakeel, Syed Ormer Gillani, Umer Ansari."Detection of glaucoma using retinal fundus images" , 2014 . [4]. Mvoulana, A., Kachouri, R. and Akil, M. (2019) β€˜Fully automated method for glaucoma screening using robust optic nerve head detection and unsupervised segmentation based cup-to-disc ratio. Elsevier Ltd, 77. doi: 10.1016/j.compmedimag.2019.101643 [5]. paper.ijcsns.org. [6]. Law Kumar Singh, Pooja, Hitendra Garg."Detection of Glaucoma in Retinal Fundus Images Using Fast Fuzzy C means clustering approach" , (ICCCIS), 2019. [7]. Rutuja Shinde. "Glaucoma detection in retinal fundus images using U-Net and supervised machine learning algorithms”, IntelligenceBased Medicine, 2021. [8]. Rutuja Shinde. "Glaucoma detection in retinal fundus images using U-Net and supervised machine learning algorithms”,IntelligenceBased Medicine, 2021. [9]. Rutuja Shinde. "Glaucoma detection in retinal fundus images using U-Net and supervised machine learning algorithms" , IntelligenceBased Medicine, 2021. [10]. Hayder Jaber Samawi, Ali Yakoob Al-Sultan, Enas Hamood Al-Saadi. "Optic Disc Segmentation in Retinal Fundus Images Using Morphological Techniques and Intensity Threshold" and (CSASE), 2020.