While there is no industry-accepted protocol for measuring the functionality of peripheral blood mononuclear cells (PBMC), it’s an important test that should be conducted for quality control. We developed a custom assay using recall antigens to understand the in vitro activity of our cells.
Access the full case study here to learn about our process: https://astartebio.com/resources/case-studies/using-recall-antigen-assay-tool-understanding-immunity/
I reviewed several manuscripts, books, grants and project proposals. This is one of the paper I reviewed recently published in Plant Biotechnology Journal
Western Blot Antibody Customer Review for Anti-PDHA1 Polyclonal Antibody (STJ...St John's Laboratory Ltd
Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial is an enzyme that in humans is encoded by the PDHA1 gene.
The pyruvate dehydrogenase complex is responsible for the oxidative decarboxylation of pyruvate, with the final product being Acetyl CoA.
Mutations in the PDHA1 gene have been known to cause one form of pyruvate dehydrogenase deficiency. Pyruvate dehydrogenase deficiency is characterized by the buildup of a chemical called lactic acid in the body and a variety of neurological problems.
The antibody was affinity-purified from rabbit antiserum by affinity-chromatography using epitope-specific immunogen.
Anti-PDHA1 - http://www.stjohnslabs.com/pdha1-antibody-p-93852?filter_name=STJ95006
Join our Antibody Validation Project - http://www.stjohnslabs.com/services/antibody-validation
I reviewed several manuscripts, books, grants and project proposals. This is one of the paper I reviewed recently published in Plant Biotechnology Journal
Western Blot Antibody Customer Review for Anti-PDHA1 Polyclonal Antibody (STJ...St John's Laboratory Ltd
Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial is an enzyme that in humans is encoded by the PDHA1 gene.
The pyruvate dehydrogenase complex is responsible for the oxidative decarboxylation of pyruvate, with the final product being Acetyl CoA.
Mutations in the PDHA1 gene have been known to cause one form of pyruvate dehydrogenase deficiency. Pyruvate dehydrogenase deficiency is characterized by the buildup of a chemical called lactic acid in the body and a variety of neurological problems.
The antibody was affinity-purified from rabbit antiserum by affinity-chromatography using epitope-specific immunogen.
Anti-PDHA1 - http://www.stjohnslabs.com/pdha1-antibody-p-93852?filter_name=STJ95006
Join our Antibody Validation Project - http://www.stjohnslabs.com/services/antibody-validation
A new generation of cancer immunotherapy called isac can achieve complete tum...DoriaFang
In a new study published in Nature Cancer on December 7, researchers from Bolt Biotherapeutics and Stanford University School of Medicine have developed an immune-stimulating antibody conjugates (ISAC). It combines the accuracy of antibody targeting tumors with the killing potential of the innate and adaptive immune system into a single drug, achieving complete tumor regression and durable anti-tumor immunity in multiple tumor models.
It is safe to say that at least a 500% improvement in the overall antioxidant efficiency was seen during these preliminary in vitro tests due to ASEA exposure.
Identification of antibiotic resistance genes in Klebsiella pneumoniae isolat...QIAGEN
Antibiotic resistant strains of pathogenic bacteria are a growing worldwide health problem. To effectively combat the spread of difficult-to-treat bacterial infections, rapid surveillance methods for detection of antibiotic resistance genes is required to monitor both bacterial isolates and metagenomic samples. Additionally, identification of potential new sources for different antibiotic resistance genes is critical. Both of these goals require tools that can be used for profiling of antibiotic resistance genes from various types of samples. Real-time PCR has proven to be effective for the detection of antibiotic resistance genes. Using PCR array technology, simultaneous detection of 87 prevalent and important antibiotic resistance genes is possible and should prove to be an effective method for antibiotic resistance monitoring. This allows for a more comprehensive profiling of antibiotic resistance genes than is possible using individual PCR assays.
Comparison of Culture Media for In Vitro T Cell Expansion & FunctionCellero
Presented by Astarte Biologics (astartebio.com) at the Society for Immunotherapy of Cancer (SITC) 33rd Annual Meeting. This research explores a series of studies comparing the performance of several culture media.
A new generation of cancer immunotherapy called isac can achieve complete tum...DoriaFang
In a new study published in Nature Cancer on December 7, researchers from Bolt Biotherapeutics and Stanford University School of Medicine have developed an immune-stimulating antibody conjugates (ISAC). It combines the accuracy of antibody targeting tumors with the killing potential of the innate and adaptive immune system into a single drug, achieving complete tumor regression and durable anti-tumor immunity in multiple tumor models.
It is safe to say that at least a 500% improvement in the overall antioxidant efficiency was seen during these preliminary in vitro tests due to ASEA exposure.
Identification of antibiotic resistance genes in Klebsiella pneumoniae isolat...QIAGEN
Antibiotic resistant strains of pathogenic bacteria are a growing worldwide health problem. To effectively combat the spread of difficult-to-treat bacterial infections, rapid surveillance methods for detection of antibiotic resistance genes is required to monitor both bacterial isolates and metagenomic samples. Additionally, identification of potential new sources for different antibiotic resistance genes is critical. Both of these goals require tools that can be used for profiling of antibiotic resistance genes from various types of samples. Real-time PCR has proven to be effective for the detection of antibiotic resistance genes. Using PCR array technology, simultaneous detection of 87 prevalent and important antibiotic resistance genes is possible and should prove to be an effective method for antibiotic resistance monitoring. This allows for a more comprehensive profiling of antibiotic resistance genes than is possible using individual PCR assays.
Comparison of Culture Media for In Vitro T Cell Expansion & FunctionCellero
Presented by Astarte Biologics (astartebio.com) at the Society for Immunotherapy of Cancer (SITC) 33rd Annual Meeting. This research explores a series of studies comparing the performance of several culture media.
This ppt file represents a simple overview on what is antibody validation & how to validate an antibody before performing any research.
Used references are also included.
T cell recall response of two hypothetical proteins (Rv2251 and Rv2721c) from...Santhi Devasundaram
The demonstrated variable efficacy of the only licensed TB vaccine Mycobacterium
bovis bacillus CalmetteeGue´rin (M. bovis BCG) encourages the need for new vaccine candidates
against TB. Antigen specific cellular immune response is often considered imperative
during Mycobacterium tuberculosis (M. tuberculosis) infection and antigens that are strongly
associated with the latent phase of infection are drawing increasing attention for anti-TB vaccine
development. Here, we investigated the phenotypic and functional profiles of two novel
mycobacterial antigens Rv2251 and Rv2721c during T cell recall response via multi-color flow
cytometry.
Abdominal Tuberculosis – How Far are Our Diagnostics Illuminating?Apollo Hospitals
Tuberculosis can involve any part of the gastrointestinal tract from mouth to anus, the peritroneum, pancreas and the hepatobiliary system. Gastrointestinal tuberculosis mimics many clinical conditions and only a high degree of suspicion can help in the diagnosis otherwise there are chances of missing it leading to high morbidity and mortality. Various methods of diagnosis are available but which one is the right test for a particular patient needs to be ascertained. Culture remains the gold standard method of diagnosis. Fast track cultures like MGIT/M Bact Alert 3 D can give faster results with in few days to few weeks. Molecular tests are fastest and can be used as a supplementary test. Nested PCR can give results with in few hours.
There are many methods for measuring cell-mediated cytotoxicity, each with pros and cons. Learn about strategies for accurately measuring cell-mediated cytotoxicity based on your research goals: https://astartebio.com/blog/strategies-for-accurately-measuring-cell-mediated-cytotoxicity/
Strategies for Accurately Measuring Cell-Mediated CytotoxicityCellero
Cell-mediated cytotoxicity is a cornerstone of the adaptive immune system, allowing our bodies to effectively identify, target, and lyse cells to help contain pathogens. Read this review of the types of cell-mediated cytotoxicity and appropriate measurement methods. See more at https://astartebio.com/
Learn more about the pros and cons of 14 popular activation measurements, along with tips and recommendations for choosing the best method for your research. Access the full webinar recording with audio here: https://astartebio.com/resources/webinars/14-activation-methods/
While these two cell types are often referred to interchangeably as stem cells, there are key differences to note between progenitor cells and CD34+ cells. Learn more about their similarities and differences here: https://astartebio.com/blog/ask-a-scientist-progenitor-vs-cd34-cells/
4 Factors That Affect Research ReproducibilityCellero
Reproducibility is a fundamental aspect of any scientific research. Learn about 4 key areas where you can improve the reproducibility of your immunology and inflammation research experiments. Learn more at https://astartebio.com/
4 Factors That Affect Research ReproducibilityCellero
Learn how to improve reproducibility in your lab by focusing on these key sources of variability. Insights, data, and tips from an immunology and inflammation research laboratory. https://astartebio.com/research/
The amount of blood transfused in the US has fallen, but the amount of blood donated has fallen faster. To learn what bioengineers are doing to decrease our dependency on blood donations, view our infographic or visit https://astartebio.com/bioengineering-solutions-blood-supply-shortage/
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
ESR spectroscopy in liquid food and beverages.pptxPRIYANKA PATEL
With increasing population, people need to rely on packaged food stuffs. Packaging of food materials requires the preservation of food. There are various methods for the treatment of food to preserve them and irradiation treatment of food is one of them. It is the most common and the most harmless method for the food preservation as it does not alter the necessary micronutrients of food materials. Although irradiated food doesn’t cause any harm to the human health but still the quality assessment of food is required to provide consumers with necessary information about the food. ESR spectroscopy is the most sophisticated way to investigate the quality of the food and the free radicals induced during the processing of the food. ESR spin trapping technique is useful for the detection of highly unstable radicals in the food. The antioxidant capability of liquid food and beverages in mainly performed by spin trapping technique.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Using a Recall Antigen Assay as a Tool for Understanding Immunity: A Case Study
1. CASE STUDY
ASTARTE IN ACTION
Using a Recall Antigen
Assay as a Tool for
Understanding Immunity
2. 2
Introduction
While there is no industry-accepted
protocol for measuring the functionality
of peripheral blood mononuclear cells
(PBMC), it’s an important test that should
be conducted for quality control.
We needed a reliable, reproducible way to
measure the functionality of our cryopreserved
PBMC, so we developed a custom assay using
recall antigens to understand the in vitro activity
of our cells. By testing PBMC for immune response
to several different antigens over time, we
intended to better understand an acceptable
range of variation in recall response from PBMC
samples from the same donor over time.
Methods
1. Cryopreserved PBMC were thawed in a 37°C
water bath and the concentration adjusted to
2.5 x 106
per mL in X-VIVO™ 15 medium.
2. Cells were added to a round bottom, 96 well
plate at 100 uL per well.
3. Dilutions of antigens and mitogens were
prepared in X-VIVO 15 medium. Tetanus
toxoid and Cytomegalovirus (CMV) antigens
were diluted to 2 ug/mL. Lipopolysaccharide
(LPS) was diluted to 200 ng/mL.
Phytohemaglutinin (PHA) was titrated to
determine the optimal concentration, which
we found to be 1 ug/mL.
4. Antigens were added to the well plate at
100 uL per well in triplicate. 100 uL of medium
was added to three wells as a control.
5. Samples were incubated at 37°C, 6% CO2
for
four days. Note: Day four is not the optimal time
to measure cytokine concentrations for all of the
antigens and mitogens in this assay. Day four
was chosen to maximize the chance of seeing a
response to all four antigens.
(See Figures 1 and 2)
6. 150 uL of medium was removed from each
well and used for cytokine analysis.
900
800
700
600
500
400
300
200
100
0
Kinetics of IFNγ Production
Tetanus Toxoid LPS
pg/mLIFNγ
0 1 2 3 4 5
Days in Culture
Figure 1. IFNγ concentrations for samples containing
tetanus toxoid and CMV were measured on culture day
one, two, three, and four. Day four may or may not have
been peak concentration.
7000
6000
5000
4000
3000
2000
1000
0
Kinetics of TNFα Production
PHA LPS
pg/mLTNFα
0 1 2 3 4 5
Days in Culture
Figure 2. Peak cytokine concentration for samples
containing PHA was observed on culture day three
using TNFα. Peak cytokine concentration for samples
containing LPS was observed on culture day one
using TNFα.
3. 3
Results
Recall Response is Highly
Reproducible, But Some
Variation is Expected
Repeated testing of a reference lot of PBMC using
the recall antigen assay resulted in varying levels
of cytokine production, even when the lot of
antigen, culture medium, and other conditions
were kept constant. (See Figure 3)
Due to this variability, the recall antigen assay
should not be used to compare separate runs or
experiments. Although recall patterns seem to be
stable across experiments, the variation makes it
difficult to compare results quantitatively.
However, comparisons of results within the same
run or experiment are acceptable. We have used
this recall antigen assay to evaluate different lots
of antigen with high reproducibility. (See Figure 4)
800
700
600
500
400
300
200
100
0
Vial-to-Vial Reproducibility
pg/mLIFNγ
3
Experiment Number
4 521
Figure 3. The response to tetanus toxoid was measured
using the same lot of PBMC and the same lot of antigen
on five separate occasions. Each experiment reported an
immune response to tetanus toxoid, but IFNγ production
varied from less than 100 pg/mL to 700 pg/mL.
4000
3500
3000
2500
2000
1500
1000
500
0
Comparison of CMV Antigen Lots
pg/mLTNFα
3
µg/mL Antigen
10.3
Lot #2Lot #1
Figure 4. The recall antigen assay was used to measure
cytokine production of the PBMC samples using two
different lots of CMV at varying concentrations. This graph
shows lot-to-lot variability for CMV.
Donor Response to Recall
Antigens Varies Over Time
The degree of recall response can vary over time as
measured by our recall antigen assay, even for the
same donor. Be cautious of using the same donor
for multiple experiments, as even samples from the
same donor can vary depending on factors such as
time of collection. Our samples were all collected at
approximately the same hour of the day, but other
variables can impact the immune response. More
research is needed to understand these variables.
As shown in Figure 5, samples from donor 287
collected at different times over a 20-month period
had a positive response to both tetanus toxoid and
CMV, but the degree of response varied over time
even as all other variables were kept constant.
4. 4
20000
18000
16000
14000
12000
10000
8000
6000
4000
2000
0
Donor 287pg/mLIFNγ
Tetanus Toxoid CMV
Jan-16 Aug-16 Dec-16 Jun-17
Figure 5. The response to tetanus toxoid and CMV
antigens were measured using the PBMC samples taken
from the same donor at different times over a 20-month
period. Except for a lower response in January 2016,
donor 287 maintained a robust response to tetanus
toxoid and CMV.
Our experiments have shown that tetanus
immunizations have a lasting impact. Most of
our donors have a positive response to tetanus
toxoid (defined as 100 pg/mL or more), although
the degree of response has a wide range of up to
10,000 pg/mL. This range could be attributed to
the recency of a booster vaccination.
Compared to a one-time tetanus immunization,
the responses to CMV, a chronic infection, were
much less variable for donor 287. Because CMV-
positive donors have the virus for life, their T cells
are more likely to be exhausted by the constant
battle to keep the virus in check. This may explain
the relative ease of demonstrating the effect of a
PD-1 antibody on the in vitro immune response
to CMV, and is also a model for response to
cancer antigens, which are chronically present
and likely to drive T cells to exhaustion.
The Recall Antigen Assay Can
Be Manipulated to Increase or
Decrease the Immune Response
There is great excitement surrounding the
progress of targeted therapies that use the
immune system to attack cancer cells. The
activity of one such drug, Nivolumab, can be
demonstrated in our recall antigen assay by
measuring the immune response to
CMV antigen.
Nivolumab works by intensifying the immune
response to cancer. Figure 6 shows that the
cultures in our assay containing Nivolumab had
a greater response to CMV antigen than the
control cultures.
Similar approaches can also be tested using this
assay to monitor the impact of drug candidates
on the in vitro immune response. Whether you
want to boost the response as in cancer or
vaccine design or blunt the immune attacks as in
autoimmune disease or allergy drug candidates,
this assay can be used as a model.
µg/mL Antigen
IgG4Nivolumab
4500
4000
3500
3000
2500
2000
1500
1000
500
0
Donor 349
pg/mLIFNγ
0.3 1 100.10
Figure 6. The response of donor 349 to CMV antigens
was measured when Nivolumab (Opdivo®) was added
to the culture. IgG4 was used as a negative control for
Nivolumab. The secretion of IFNγ was increased 100% or
more by this checkpoint inhibitor.