The COVID-19 pandemic is driving the need for rapid development of effective vaccines and therapies. Developing an effective vaccine requires an understanding of the adaptive immune response to SARS-CoV-2. An assay to measure circulating antibodies, specifically neutralizing antibodies (NAbs) that disrupt receptor-binding domain (RBD) and angiotensin-converting enzyme 2 (ACE2) binding to prevent SARS-COV-2 cell entry is an important research tool.
ImmunoRank is a high-throughput surrogate assay that semi-quantitative detects and ranks circulating SARS-CoV-2 neutralizing antibodies of all Ig classes (total antibody) in human plasma or serum. Highly correlated to FRNT or PRNT live virus tests, but is less laborious, takes only 80 minutes to complete, and does not require a BSL3 laboratory.
Detecting neutralization antibodies to covid 19Melvin Alex
A robust serological test to detect neutralizing antibodies to SARS Cov-2 is needed to determine not only the infection rate, herd immunity, and predicted humoral protection, but also vaccine efficacy during clinical trials after large-scale vaccination.
Coronaviruses belong to the subfamily of Orthocoronavirinae in the family Coronaviridae, in the order Nidovirales. They are enveloped viruses with a positive-sense single-stranded RNA genome and a nucleocapsid of helical symmetry.
Lyme disease is caused by bacterium Borrelia burgdorferi. It is transmitted to humans through the bite of infected black-legged ticks. Typical symptoms include fever, headache, fatigue, and a characteristic skin rash called erythema migrans.
The Borrelia IgM ELISA kit is an indirect enzyme immunoassay for the qualitative or quantitative determination of Borrelia IgM antibodies in human serum, plasma, and CSF samples.
Covid-19 Brief Review | A holistic review at pandemic Akhtar Hussain
Presentation holistically and briefly covers the technical aspects of global pandemic. To put things in perspective a comparison woth recent pandemics is also included.
I have tried to make the presentation as rational and unbiased. Though with the ever coming developments daily some things might become redundant even in 10 days only. would love to get suggestions for improvement.
Detecting neutralization antibodies to covid 19Melvin Alex
A robust serological test to detect neutralizing antibodies to SARS Cov-2 is needed to determine not only the infection rate, herd immunity, and predicted humoral protection, but also vaccine efficacy during clinical trials after large-scale vaccination.
Coronaviruses belong to the subfamily of Orthocoronavirinae in the family Coronaviridae, in the order Nidovirales. They are enveloped viruses with a positive-sense single-stranded RNA genome and a nucleocapsid of helical symmetry.
Lyme disease is caused by bacterium Borrelia burgdorferi. It is transmitted to humans through the bite of infected black-legged ticks. Typical symptoms include fever, headache, fatigue, and a characteristic skin rash called erythema migrans.
The Borrelia IgM ELISA kit is an indirect enzyme immunoassay for the qualitative or quantitative determination of Borrelia IgM antibodies in human serum, plasma, and CSF samples.
Covid-19 Brief Review | A holistic review at pandemic Akhtar Hussain
Presentation holistically and briefly covers the technical aspects of global pandemic. To put things in perspective a comparison woth recent pandemics is also included.
I have tried to make the presentation as rational and unbiased. Though with the ever coming developments daily some things might become redundant even in 10 days only. would love to get suggestions for improvement.
Re-purposing ILRI labs to support national COVID-19 testing in KenyaILRI
Poster prepared by Edward Okoth and Samuel Oyola for the Global Agenda for Sustainable Livestock Africa 1 regional online meeting, 2-3 September 2020. Nairobi, Kenya: ILRI.
Presentations Slides from the mBIO Congress, London, 2014
- http://www.global-engage.com/event/qpcr-digital-pcr-4bio/ -
describing the design and implementation of an ultra-sensitive HIV qPCR assay.
Dr. X.J. Meng - Designing PRRSV Vaccines for Heterologous ProtectionJohn Blue
Designing PRRSV Vaccines for Heterologous Protection - Dr. X.J. Meng, VA-MD College of Veterinary Medicine, Virginia Tech, from the 2015 North American PRRS Symposium, December 4 - 5, 2015, Chicago, IL, USA.
More presentations at http://www.swinecast.com/2015-north-american-prrs-symposium
Right now the whole world is facing the covid-19 pandemic, and right now diagnosis and prevention of the spread of disease is the best option we have. This presentation includes methods that are currently in use for the identification of SARS-Co-V 2 / Covid-19. other than currently used methods this presentation also includes potential wearable devices that can be used for early detection of Covid-19.
Developing Ultra-Sensitive PCR Protocols for HIV Vaccine ResearchKate Barlow
Catherine Kibirige, Clinical Research Scientist at Imperial College London, discusses:
• The development of PCR assays that detect down to 3
copies of HIV-1 DNA/RNA with >90% reliability.
• A pilot study using archival cells (PBMCs) from HIV-
infected men with <20 copies HIV-1 RNA/ml plasma. HIV-
1 RNA was detected significantly more frequently in cells
from a high inflammation group (21/27; 78%) compared to
a low inflammation group (7/27; 26%; p=.0003).
• Using the assays to characterize the viral-inhibition
assay (VIA) used in IAVI vaccine clinical trials to assess
the impact of anti-HIV CD8 responses in the context of
CD4 T-cell HIV transcription. Assessing HIV levels
in archival samples to establish and correlate the HIV
levels measured by these assays to previous
assessments, thus enhancing the vaccine design
efforts.
Re-purposing ILRI labs to support national COVID-19 testing in KenyaILRI
Poster prepared by Edward Okoth and Samuel Oyola for the Global Agenda for Sustainable Livestock Africa 1 regional online meeting, 2-3 September 2020. Nairobi, Kenya: ILRI.
Presentations Slides from the mBIO Congress, London, 2014
- http://www.global-engage.com/event/qpcr-digital-pcr-4bio/ -
describing the design and implementation of an ultra-sensitive HIV qPCR assay.
Dr. X.J. Meng - Designing PRRSV Vaccines for Heterologous ProtectionJohn Blue
Designing PRRSV Vaccines for Heterologous Protection - Dr. X.J. Meng, VA-MD College of Veterinary Medicine, Virginia Tech, from the 2015 North American PRRS Symposium, December 4 - 5, 2015, Chicago, IL, USA.
More presentations at http://www.swinecast.com/2015-north-american-prrs-symposium
Right now the whole world is facing the covid-19 pandemic, and right now diagnosis and prevention of the spread of disease is the best option we have. This presentation includes methods that are currently in use for the identification of SARS-Co-V 2 / Covid-19. other than currently used methods this presentation also includes potential wearable devices that can be used for early detection of Covid-19.
Developing Ultra-Sensitive PCR Protocols for HIV Vaccine ResearchKate Barlow
Catherine Kibirige, Clinical Research Scientist at Imperial College London, discusses:
• The development of PCR assays that detect down to 3
copies of HIV-1 DNA/RNA with >90% reliability.
• A pilot study using archival cells (PBMCs) from HIV-
infected men with <20 copies HIV-1 RNA/ml plasma. HIV-
1 RNA was detected significantly more frequently in cells
from a high inflammation group (21/27; 78%) compared to
a low inflammation group (7/27; 26%; p=.0003).
• Using the assays to characterize the viral-inhibition
assay (VIA) used in IAVI vaccine clinical trials to assess
the impact of anti-HIV CD8 responses in the context of
CD4 T-cell HIV transcription. Assessing HIV levels
in archival samples to establish and correlate the HIV
levels measured by these assays to previous
assessments, thus enhancing the vaccine design
efforts.
Corona is here to stay and it is predicted that over 70% of population will get the infection (fortunately not all will fall sick or very sick). (Recovery rate of over 74% & Death rate around 2%).
A lot of confusion exists regarding testing for covid and what test to do, when and how to interpret these tests.
Compiled by Dr. Narendra Malhotra
Remdesivir is a direct-acting antiviral that inhibits RNA-dependent RNA polymerase from severe acute respiratory syndrome coronavirus 2 with high potency
A original article presentation in journal club.
It gives you better idea how to present a research article.
A cross sectional study was conducted to compare two different methods first is rapid card test and other is real time pcr for the diagnosis of corona virus disease.
understanding of the human immune system, and thereby cancer immunology.
αβT-cells are the primary constituents of human cell-mediated adaptive immunity.
The antigen specificity of each αβT-cell is encoded in the 500-600 bp transcript
encompassing the variable portion of the rearranged TCRα and TCRβ subunits,
which can be read via NGS in a process termed repertoire sequencing. Until now,
the main challenge the field faces is the lack of a technology that can provide a
contiguous read of 600 bp to minimize the complexity of designing bias-prone
primers and informatics challenges of stitching short reads. Here we leverage the
long read capability of Ion 530™ chip to comprehensively sequence all three CDR
domains of the TCRβ chain. The Ion 530™ chip offers greater than 15 M productive
reads, allowing a multiplex of 2-4 samples with sufficient coverage for most repertoire
profiling studies. Initial testing with leukocyte total RNA demonstrates that this
multiplex PCR assay produced repertoires that were much more similar to data
derived from 5’-RACE protocol than the commonly used BIOMED-2 primer set. This
result suggested that the use of long reads minimizes bias by allowing targeting of
less variable regions. To further assess the performance of the assay, we designed a
model system of 30 plasmid controls containing common human T-cell CDR3
sequences. Each plasmid was amplified individually and sequenced to confirm the
detection of a single clonal population. Analytical sensitivity of the assay and
accuracy of the accompanied analysis solution were further evaluated by spiking in
plasmid concentrations from 10 pg to 0.0001 pg (5 million to 50 copies) in a
background of 100 ng cDNA reverse transcribed from leukocyte total RNA. Results
showed the assay offers linearity over 5 orders of magnitude of decreasing input
concentration. In summary, we have demonstrated a NGS workflow for TCRβ
sequencing that offers multiplex flexibility on Ion S5 with sample to answer in less
than 48 hours.
El ARN del SARS-CoV-2 de transcripción inversa puede integrarse en el genoma de células humanas cultivadas y puede ser expresado en tejidos derivados del paciente
Proceedings of National Academy of SciencesPNAS is a partner of CHORUS, COPE, CrossRef, ORCID, and Research4Life.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
2. SARS-C0V-2 Antigens and Primary Functions
Antibodies against SARS-CoV-2 begin to appear during the first week following symptom
onset, with seroconversion occurring approximately one week later5
.
These antibodies are primarily specific for the nucleocapsid (N) and spike (S) structural
proteins6-8
.
The nucleocapsid (N) protein packages the viral RNA genome into a helical
ribonucleoprotein complex9
.
The spike (S) protein mediates viral attachment, fusion, and entry into host cells10
.
The receptor-binding domain (RBD) protein of the S protein binds to the
angiotensin-converting enzyme 2 (ACE2) receptor on host cells10-12
. The RBD is highly
immunogenic and can elicit neutralizing antibodies (NAbs) that disrupt the RBD-ACE2
interatction and prevent SARS-CoV-2 cell entry8,13,14
.
3. Figure 1. Neutralizing antibodies targeting the SARS-CoV-2 spike protein, specifically the
RBD, prevent cell entry by disrupting the interaction between the RBD and
angiotensin-converting enzyme 2 (ACE2).
4. Serological Assays
Serological assays are available that detect serum antibodies against SARS-CoV-2 N and S proteins in
individuals who have an active or have had a prior infection and developed an adaptive humoral
immune response.
Evaluating the anti-SARS-CoV-2 RBD antibodies has been shown to be the most reflective and
sensitive indicator of past SARS-CoV-2 infection15
. Specifically NAbs, which are protective antibodies.
PRNT and FRNT Tests
Live virus neutralization assays, including the plaque reduction neutralization test (PRNT) and focus
reduction neutralization test (FRNT), are the standard methods of evaluating NAbs.
PRNT and FRNT tests are laborious, require biosafety level 3 containment facilities, and take several
days to complete.
5. Convalescent Plasma
Treatment option in patients with COVID-19 infection.
Conflicting clinical study data with some studies showing a reduction in viral loads and
increased survival4
, while others show convalescent plasma offering little clinical benefit.
The Problem
Rapid, high-throughput screening assays for selecting convalescent plasma containing
protective levels of antibodies are not available.
Correlation of traditional serologic assays with NAb titers is still unknown.
6. ImmunoRankTM
Assay Principles
By Leinco Technologies
● Semi-Quantitative detection and ranking of circulating SARS-CoV-2 neutralizing
antibodies of all Ig classes (total antibody) in human plasma or serum
● Capture Antigen: SARS-CoV-2 Receptor Binding Domain (RBD)
○ Detects antibodies that bind to the SARS-CoV-2 RBD and block binding of the RBD to the
ACE2 receptor
● Specificity: 99.8%
● Number of Tests: 90
● Assay Range: 0-100% Neutralization
● Assay Procedure: 80 minutes
7. Figure 2. Detection of anti-SARS-CoV-2 RBD neutralizing antibodies using
ImmunoRankTM. ELISA well A shows antibodies bound to SARS-CoV-2 RBD,
preventing binding to ACE2, indicating no color. ELISA well B shows SARS-CoV-2
RBD bound to immobilized ACE2, indicating a blue color.
9. Interpretation of Results
Percent Neutralization or Sample Neutralization Index (SNI) determined using the assay’s:
● Negative control - buffered protein solution
● Positive Control - contains a highly neutralizing recombinant human monoclonal
anti-SARS-CoV-2 antibody (IgG1) sequenced from the plasma B cells of a COVID-19
survivor.
● Cutoff Control - value determined as >20% and assigned based on the mean
neutralization of 531 negative plasma samples collected before the COVID-19
outbreak plus 4 times the standard deviation.
Algorithm to Determine %
Neutralization/SNI
% Neutralization = [1 - (Sample OD450nm
/
Negative Control OD450nm
)] / [1 - (Positive Control
OD450nm
/ Negative Control OD450nm
)] x 100
% Neutralization/SNI Test Result
% < 20% Negative
20% < % < 50 Low levels
50% < % < 75 Moderate levels
75% < % <100 High levels
Table 1. Interpretation of percent neutralization values.
10. Validation - Accuracy
We first verified that purified recombinant ACE2 and RBD could mimic the virus-receptor interactions by incubating
RBD-HRP with immobilized ACE2. As expected, RBD bound to immobilized ACE2 in a dose-dependent manner
(Figure 4). Furthermore, this interaction was dose-dependently neutralized by recombinant human anti-SARS-CoV-2
RBD monoclonal antibodies, but not by anti-SARS-CoV-2 N-terminal domain (NTD) monoclonal antibodies (Figure 5).
Figure 4. Dose-dependent binding curve of
SARS-CoV-2 RBD-HRP binding to immobilized ACE2
r-SARS-CoV-2 RBD-HRP Reactivity with r-Human ACE2
11. Validation - Accuracy (Cont.)
COVID-19 ImmunoRankTM
Neutralization MICRO-ELISA Serology Assay
Figure 5. Neutralization of SARS-CoV-2 RBD binding to ACE2 by a panel of monoclonal
antibodies sequenced from COVID-19 survivors. Clones A-D recognize the SARS-CoV-2
receptor-binding domain (RBD), and clone E is specific for the SARS-CoV-2 N-terminal
domain (NTD) of the spike protein. Antibodies were spiked into negative human plasma
collected before December 1, 2019.
12. Validation - Accuracy (Cont.)
We then compared the percent neutralization of 15 plasma samples from convalescent plasma donors
using ImmunoRankTM
to the live virus FRNT neutralization titers17
.
● 12/15 plasma samples previously identified as positive for anti-SARS-CoV-2 IgG/IgM antibodies.
● Positive - NAbs identified in 12 (100%) by FRNT; NAbs identified in 11 (92%) by ImmunoRankTM
.
● Negative - no NAbs (100%) identified in any of the 3 samples by FRNT and ImmunoRankTM
.
Samples FRNT ImmunoRankTM
Percent
Agreement
95% CI*
No. Pos No. Neg No. Pos No. Neg
Positive 12 0 11 1 92.0% 64.6-98.5%
Negative 0 3 0 3 100% 43.9-100%
Table 2. Accuracy of the ImmunoRankTM
assay compared to the standard live
virus focus reduction neutralization test (FRNT).
*95% CI determined using the Wilson Method19
.
13. Validation - Accuracy (Cont.)
ImmunoRankTM
Neutralization vs. Live Virus Neutralization FRNT50
Figure 6. Accuracy of the ImmunoRankTM assay compared to the standard live virus focus
neutralization test (FRNT) in determining neutralization titers of anti-SARS-CoV-2 antibody
negative (n=3) and positive (n=12) convalescent plasma samples. Line represents the positivity
cutoff for both assays.
14. Validation - Specificity
● We evaluated potentially cross-reacting antibodies by analyzing a total of 55 specimens with specificity for
11 different categories.
● All tested negative, demonstrating that ImmunoRankTM
is highly specific for detecting the presence of
neutralizing antibodies to SARS-CoV-2 (Table 3).
● We evaluated 531 presumed negative plasma samples collected from healthy US donors before the
COVID-19 outbreak (December 1, 2019). 527 out of 531 samples were negative for NAbs, resulting in a
99.3% specificity (Table 3).
Antibody Source n # of Negatives (%) Antibody Source n # of Negatives (%)
Human Coronavirus NL63 5 5 (100) Hepatitis C 5 5 (100)
Human Coronavirus 229E 5 5 (100) Hepatitis B 5 5 (100)
Human Coronavirus OC43 5 5 (100) Haemophilus Influenzae 5 5 (100)
Human Coronavirus HKU1 5 5 (100) Respiratory Syncytial Virus 5 5 (100)
Influenza A 5 5 (100) HIV 5 5 (100)
Influenza B 5 5 (100) Negative Human Plasma 531 527 (99.3)
Table 3. Specificity of the ImmunoRankTM
assay.
15. Validation - Precision
To determine intra-assay repeatability and within-laboratory precision, we calculated the percent
neutralization values of the positive and negative controls, as well as a contrived positive plasma
sample using one ImmunoRankTM
kit lot. Performed in triplicate at two separate times per day and
on 5 different days18
.
● Intra-assay repeatability - calculated the standard deviation (SD) and coefficient of variation
(CV) of the triplicate samples within one assay (Table 4). The %CV ranged from 0.6-3.1%,
demonstrating a high degree of intra-assay repeatability.
● Within-laboratory precision - compared the percent neutralization values within-assay,
between assays, and between days (Table 4). Based on the %CV values, which ranged from
0.9%-13%, ImmunoRankTM
also shows a high degree of within-laboratory precision.
16. Validation - Precision (Cont.)
Sample n Mean
SNI%
Intra-assay Repeatability Within-laboratory
Precision
SD %CV SD %CV
Positive Control 30 94% 0.005 0.6% 0.09 0.9%
Negative Control 30 0% 0.025 N/A 0.03 N/A
Contrived Positive
Plasma Panel
30 44.9% 0.014 3.1% 0.058 13.0%
Contrived Positive
Plasma Panel Near
Cutoff
21 28.1% 0.025 8.9% 0.033 11.8%
Table 4. Intra-assay repeatability and within-laboratory precision of percent
neutralization (SNI%) values obtained using ImmunoRankTM
.
17. Case Study
Presence of anti-SARS-CoV-2 RBD antibodies in convalescent donor samples
To evaluate whether ImmunoRankTM
could screen convalescent donor samples for NAbs, we tested 100 plasma
samples of PCR-confirmed COVID-19 convalescent donors using ImmunoRankTM. Only 61% of the
convalescent plasma samples contained anti-SARS-CoV-2 RBD NAbs (Table 5).
● The majority of the positive samples exhibited low-to-moderate neutralization activity (80%). Of these
positive samples, 20% showed high neutralization activity, demonstrating highly variable levels of NAbs
in convalescent donor samples.
% Neutralization/SNI Number of samples
< 20% (Negative) 39
21 - 50% (Low positive) 33
51 - 75% (Moderate positive) 16
> 75% (High positive) 12
Table 5. Percent neutralization of 100 plasma samples from convalescent donors as
determined by ImmunoRankTM
.
18. Conclusion
The studies and data demonstrate the following:
● The ImmunoRankTM
surrogate neutralization assay provides precise, repeatable, and
specific quantitation of anti-SARS-CoV-2 RBD NAbs.
● Correlates well with the live virus FRNT, and is an assay that could replace
labor-intensive, expensive, live virus assays that require biosafety containment and
take multiple days to complete.
● Can be completed in 1-2 hours, does not use live biological materials, and is amenable
to high-throughput testing.
19. Applications
Critical Diagnostic Tool For Screening
● Convalescent Plasma
● Post-Vaccine
● Post Therapeutic Antibody Treatment
● Overall Population Immunity
Research Applications Include
● Epidemiological studies
● Determining quality and longevity of the natural
human immune response
● Measuring vaccine efficacy
20. Leinco Technologies would like to give thanks to all those who participated
in the collaborative effort in developing and validating ImmunoRankTM
.
Read Full White Paper HERE
ImmunoRank can be purchased at www.leinco.com
leincoglobal@leinco.com | 800-538-1145
ImmunoRankTM
is currently sold as Research Use Only but is under
Emergency Use Authorization (EUA) review as an in vitro diagnostic.
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