Interpreting diagnostic tests for sars co v-2 - Dr. Freddy Flores MalpartidaFreddy Flores Malpartida
This document discusses interpreting diagnostic tests for SARS-CoV-2, the virus that causes COVID-19. It describes how reverse transcriptase-polymerase chain reaction (RT-PCR) tests and immunoglobulin M and G (IgM and IgG) enzyme-linked immunosorbent assays (ELISAs) can detect the virus and antibodies over time. RT-PCR tests on nasal swabs are most reliable for detecting the virus within the first 3 weeks of infection. IgM and IgG antibodies start rising in the second week and peak in the third week before IgM declines. Together, PCR and antibody tests can accurately diagnose COVID-19 at different stages of infection.
The document discusses how to interpret two common diagnostic tests for SARS-CoV-2 - reverse transcriptase-polymerase chain reaction (RT-PCR) tests and IgM and IgG enzyme-linked immunosorbent assays (ELISAs). RT-PCR tests detect viral RNA in respiratory samples and peak within the first week of symptoms, declining after 3 weeks. However, viral RNA may still be detected beyond 6 weeks in some cases. ELISA tests detect antibodies which begin rising in the second week and IgM declines after 5 weeks while IgG persists longer. Together the tests provide a timeline for detecting SARS-CoV-2 infection over the course of illness.
1. HIV is a retrovirus that infects and destroys CD4+ T cells, weakening the immune system.
2. It is spherical and enveloped, around 90-120nm in size, with a genome containing two identical RNA strands and enzymes like reverse transcriptase.
3. HIV is primarily transmitted through unprotected sexual intercourse, contaminated blood transfusions, needle sharing, and from mother to child during pregnancy, childbirth or breastfeeding.
4. Diagnosis involves screening tests like ELISA and rapid tests that detect antibodies to HIV. Supplemental tests like Western blot and viral load tests are used to confirm results.
5. Antiretroviral therapy with combinations of drugs can effectively suppress HIV
Detecting neutralization antibodies to covid 19Melvin Alex
A robust serological test to detect neutralizing antibodies to SARS Cov-2 is needed to determine not only the infection rate, herd immunity, and predicted humoral protection, but also vaccine efficacy during clinical trials after large-scale vaccination.
Recent advances in diagnosis of malaria By Dr Nidhi RaiDr Nidhi Rai Gupta
This document discusses recent advances in malaria diagnosis. It describes several diagnostic methods including microscopic examination of blood smears, fluorescent microscopy using methods like QBC, antigen detection using rapid diagnostic tests that detect proteins like HRP2 and pLDH, antibody detection methods like IFA and ELISA, and molecular diagnostic methods like PCR, LAMP, microarrays, and mass spectrometry. It provides details on the principles, procedures, advantages, and disadvantages of each method. Microscopic examination remains widely used but newer methods like rapid tests and molecular tools provide improved sensitivity, specificity, and ability to detect species.
This document discusses various laboratory tests used for HIV diagnosis and their principles and indications. It describes antibody-based tests like ELISA, rapid tests, and Western Blot. It also discusses viral detection methods like p24 antigen capture, HIV RNA viral load tests using RT-PCR, bDNA, and NASBA. The use of these tests for screening, diagnosis, monitoring treatment and in special populations like newborns is explained.
Laboratory investigation of dengue in Jeddahhosammadani
The document discusses laboratory diagnosis of dengue hemorrhagic fever. It describes dengue virus characteristics and various diagnostic techniques used including virus isolation, serological tests like ELISA and hemagglutination inhibition, and molecular detection of dengue virus RNA through reverse transcription PCR. It provides details of specific diagnostic tests and procedures used at the Jeddah Regional Laboratory.
This document provides information on COVID-19 including its background, aetiology, symptoms, transmission, and methods of detection. It discusses COVID-19, caused by the SARS-CoV-2 virus, and describes its structure and entry into human cells. Symptoms are outlined and transmission primarily occurs through respiratory droplets. Detection methods covered include PCR, LAMP, whole genome sequencing, CRISPR-Cas and serologic tests like immunofluorescence assays, ELISA, and microneutralization assays. Advantages and disadvantages of each method are presented.
Interpreting diagnostic tests for sars co v-2 - Dr. Freddy Flores MalpartidaFreddy Flores Malpartida
This document discusses interpreting diagnostic tests for SARS-CoV-2, the virus that causes COVID-19. It describes how reverse transcriptase-polymerase chain reaction (RT-PCR) tests and immunoglobulin M and G (IgM and IgG) enzyme-linked immunosorbent assays (ELISAs) can detect the virus and antibodies over time. RT-PCR tests on nasal swabs are most reliable for detecting the virus within the first 3 weeks of infection. IgM and IgG antibodies start rising in the second week and peak in the third week before IgM declines. Together, PCR and antibody tests can accurately diagnose COVID-19 at different stages of infection.
The document discusses how to interpret two common diagnostic tests for SARS-CoV-2 - reverse transcriptase-polymerase chain reaction (RT-PCR) tests and IgM and IgG enzyme-linked immunosorbent assays (ELISAs). RT-PCR tests detect viral RNA in respiratory samples and peak within the first week of symptoms, declining after 3 weeks. However, viral RNA may still be detected beyond 6 weeks in some cases. ELISA tests detect antibodies which begin rising in the second week and IgM declines after 5 weeks while IgG persists longer. Together the tests provide a timeline for detecting SARS-CoV-2 infection over the course of illness.
1. HIV is a retrovirus that infects and destroys CD4+ T cells, weakening the immune system.
2. It is spherical and enveloped, around 90-120nm in size, with a genome containing two identical RNA strands and enzymes like reverse transcriptase.
3. HIV is primarily transmitted through unprotected sexual intercourse, contaminated blood transfusions, needle sharing, and from mother to child during pregnancy, childbirth or breastfeeding.
4. Diagnosis involves screening tests like ELISA and rapid tests that detect antibodies to HIV. Supplemental tests like Western blot and viral load tests are used to confirm results.
5. Antiretroviral therapy with combinations of drugs can effectively suppress HIV
Detecting neutralization antibodies to covid 19Melvin Alex
A robust serological test to detect neutralizing antibodies to SARS Cov-2 is needed to determine not only the infection rate, herd immunity, and predicted humoral protection, but also vaccine efficacy during clinical trials after large-scale vaccination.
Recent advances in diagnosis of malaria By Dr Nidhi RaiDr Nidhi Rai Gupta
This document discusses recent advances in malaria diagnosis. It describes several diagnostic methods including microscopic examination of blood smears, fluorescent microscopy using methods like QBC, antigen detection using rapid diagnostic tests that detect proteins like HRP2 and pLDH, antibody detection methods like IFA and ELISA, and molecular diagnostic methods like PCR, LAMP, microarrays, and mass spectrometry. It provides details on the principles, procedures, advantages, and disadvantages of each method. Microscopic examination remains widely used but newer methods like rapid tests and molecular tools provide improved sensitivity, specificity, and ability to detect species.
This document discusses various laboratory tests used for HIV diagnosis and their principles and indications. It describes antibody-based tests like ELISA, rapid tests, and Western Blot. It also discusses viral detection methods like p24 antigen capture, HIV RNA viral load tests using RT-PCR, bDNA, and NASBA. The use of these tests for screening, diagnosis, monitoring treatment and in special populations like newborns is explained.
Laboratory investigation of dengue in Jeddahhosammadani
The document discusses laboratory diagnosis of dengue hemorrhagic fever. It describes dengue virus characteristics and various diagnostic techniques used including virus isolation, serological tests like ELISA and hemagglutination inhibition, and molecular detection of dengue virus RNA through reverse transcription PCR. It provides details of specific diagnostic tests and procedures used at the Jeddah Regional Laboratory.
This document provides information on COVID-19 including its background, aetiology, symptoms, transmission, and methods of detection. It discusses COVID-19, caused by the SARS-CoV-2 virus, and describes its structure and entry into human cells. Symptoms are outlined and transmission primarily occurs through respiratory droplets. Detection methods covered include PCR, LAMP, whole genome sequencing, CRISPR-Cas and serologic tests like immunofluorescence assays, ELISA, and microneutralization assays. Advantages and disadvantages of each method are presented.
This document is a lab report for a COVID-19 RT-PCR test. It indicates that the test for the sample from Miss. Nidhi Subash, a 24-year-old female, came back negative for SARS-CoV-2 RNA. The test was performed at Sankar's Healthcare Scans and Diagnostics in Alappuzha, Kerala, India and analyzed samples from a nasopharyngeal/oropharyngeal swab using real-time RT-PCR. The report provides background on SARS-CoV-2 and the test methodology, and notes that a negative result does not rule out infection and should be interpreted along with clinical observations.
1. Specific tests for diagnosing HIV infection include detecting viral antigens like p24, isolating the live virus, detecting viral nucleic acids through PCR, and detecting antibodies through ELISA and Western blot tests.
2. ELISA and rapid tests are used as initial screening tests to detect antibodies, while Western blot is a supplemental test used to confirm positive ELISA results.
3. In addition to specific tests, nonspecific tests like complete blood counts can provide clues about HIV infection by detecting signs of immune deficiency like low CD4+ T cell and platelet counts.
Corona is here to stay and it is predicted that over 70% of population will get the infection (fortunately not all will fall sick or very sick). (Recovery rate of over 74% & Death rate around 2%).
A lot of confusion exists regarding testing for covid and what test to do, when and how to interpret these tests.
Compiled by Dr. Narendra Malhotra
The COVID-19 pandemic is driving the need for rapid development of effective vaccines and therapies. Developing an effective vaccine requires an understanding of the adaptive immune response to SARS-CoV-2. An assay to measure circulating antibodies, specifically neutralizing antibodies (NAbs) that disrupt receptor-binding domain (RBD) and angiotensin-converting enzyme 2 (ACE2) binding to prevent SARS-COV-2 cell entry is an important research tool.
ImmunoRank is a high-throughput surrogate assay that semi-quantitative detects and ranks circulating SARS-CoV-2 neutralizing antibodies of all Ig classes (total antibody) in human plasma or serum. Highly correlated to FRNT or PRNT live virus tests, but is less laborious, takes only 80 minutes to complete, and does not require a BSL3 laboratory.
This study evaluated the use of reverse transcription loop-mediated isothermal amplification (RT-LAMP) for rapid detection of duck hepatitis A virus genotype C (DHAV-C). Primers were designed targeting the conserved 3D gene region of DHAV-C. RT-LAMP demonstrated high sensitivity and specificity for DHAV-C, with a detection limit about 100 times higher than reverse transcription PCR (RT-PCR). Testing of clinical samples showed RT-LAMP to be a simple, rapid, and cost-effective technique for early diagnosis and monitoring of DHAV-C infection.
1) Nanomaterials like gold nanoparticles, carbon nanotubes, and quantum dots show potential for virus detection through their unique optical and electrical properties.
2) Gold nanoparticle probes modified with influenza virus antibodies allow one-step, colorimetric detection of influenza without expensive equipment.
3) Carbon nanotube sensors could allow low-cost, routine monitoring for dengue virus detection by non-experts in places like clinics.
4) Quantum dot probes have been used to simultaneously track multiple viral proteins over time to study respiratory syncytial virus infection.
This document discusses diagnostic tests for COVID-19. It describes how samples are collected, typically nasopharyngeal or oropharyngeal swabs. Real-time reverse transcription polymerase chain reaction (RT-PCR) is the preferred testing method, using RNA extraction and fluorescent markers to detect viral DNA. Lateral flow and ELISA tests detect antibodies produced in response to infection. Treatment options discussed include chloroquine and favilavir. Several vaccine candidates are under development at universities and companies.
This document summarizes the development and validation of a one-step reverse transcription digital PCR (RT-dPCR) assay for the detection of SARS-CoV-2. Key points:
1. RT-dPCR was found to significantly improve the sensitivity of detection of SARS-CoV-2 in pharyngeal swab samples compared to RT-qPCR, reducing the false negative rate. RT-dPCR detected SARS-CoV-2 in 61 samples that were negative or equivocal by RT-qPCR.
2. When tested on 196 clinical samples, RT-dPCR increased the positive detection rate to 91% compared to 28% for RT-qPCR. RT-dPCR is well-su
Rapid and accurate detection of pathogens under field laboratory conditions is necessary for effective control of veterinary pathogens. Here we describe a prototype, portable, pathogen detection device developed for single tube, real-time, reverse transcription, loop-mediated isothermal amplification (RT-LAMP) using Laem-Singh virus (LSNV) as a model. LSNV is an RNA virus and a component cause of growth retardation in black tiger shrimp. We chose its RNA-dependent RNA polymerase
(RdRp) gene as the target for our tests. The basis for detection was measurement of turbidity arising from formation of a white, insoluble magnesium pyrophosphate precipitate byproduct upon amplification of the RdRp target sequence from 100 ng template RNA extracted from shrimp. The measurement device consisted of a heating block to maintain constant temperature in the RT-LAMP reaction for 8 Eppindorf sample tubes, a light-emitting diode (LED) light source providing red light emission at 650 nm wavelength to pass through sample tubes, a light dependent resistance (LDR) photo-detector and a software program to report turbidity events and could potentially be marketed for under US$3000. The device was connected to a computer to display real-time results in a variety of formats. The optimized protocol for LSNV detection consisted of incubation of the sample tubes at 65uC for 1 h during which turbidity was continuously measured, and quantitative results could be obtained by reaction time measurement. The sensitivity of detection was comparable to that of conventional nested RT-PCR and there was no cross reaction with other common shrimp viruses. The device was used for quantitative measurement of relative copy numbers of LSNV RdRp in 8 shrimp tissues and they were found to be highest in the gills followed in order by the lymphoid organ and hemolymph (p#0.05). This platform can be easily adapted for detection of other pathogens under field laboratory settings.
The document discusses guidelines for HIV testing and diagnosis. It covers algorithms, timing of laboratory markers, screening tests including ELISA and rapid tests, diagnostic challenges like false negatives and positives, and monitoring of patients including CD4 counts, viral load testing, and STI screening. Key points include using nucleic acid tests to diagnose infants, screening all pregnant women and high-risk groups for STIs, and monitoring HIV patients on ART through regular clinical and laboratory assessments.
Rapid Diagnostic Techniques for Detection of Infectious DiseasesMubashir Nazir
Early diagnosis always leads to better treatment, which is why the point of care testing holds an essential place in the healthcare setting. This PPT includes different categories of RDT according to their turnaround time and technology.
Molecular diagnostic techniques have revolutionized infectious disease diagnosis by allowing for faster, more sensitive detection of pathogens compared to conventional methods. The document discusses several molecular diagnostic techniques including non-amplified nucleic acid probes, amplified techniques like PCR and transcription-based amplification, and new techniques like microarrays and isothermal amplification. Molecular diagnostics can identify pathogens that cannot be cultured, detect low levels of pathogens, and provide results faster than conventional methods. This allows for more accurate patient management and control of disease transmission.
The document describes a rapid test kit for detecting canine parvovirus antigen in dog feces. Canine parvovirus causes inflammation of the intestines and other symptoms like vomiting and diarrhea. The test uses lateral flow immunoassay to detect parvovirus antigen in a fecal sample in 5-10 minutes. It has a sensitivity of 98.5% and specificity of 98% compared to ELISA tests. A positive result confirms parvovirus infection while a negative result does not rule it out, as virus shedding may be short.
Sensitivity assay of polymerase chain reaction for detection of canine adeno ...Alexander Decker
This study aimed to determine the minimum detection limit of canine adeno virus (CAV) in clinical samples using polymerase chain reaction (PCR). PCR was performed on 40 blood samples from different regions of India using reported primers for CAV detection. Positive PCR samples were serially diluted and used as templates to determine the lowest concentration detectable by PCR. The minimum detection limit was found to be a 1:1000 dilution, equivalent to 0.20 ng of DNA per microliter. The study demonstrated PCR is a sensitive method for early detection of CAV infection in clinical samples.
CRISPR system for COVID-19 diagnostics.pptxPeng-Wen Liu
CRISPR systems show promise for COVID-19 diagnosis. Current methods like PCR and antigen tests have limitations like long times, high costs, and need for trained operators. CRISPR uses Cas proteins and guide RNA to detect viral RNA or DNA. The Cas12 and Cas13 systems can detect single-stranded nucleic acids and generate a detectable signal through collateral cleavage of a reporter. Studies have used CRISPR/Cas12 to detect SARS-CoV-2 from clinical samples in under 2 hours using fluorescence or lateral flow strips. While CRISPR diagnostics are faster and cheaper than PCR, most platforms still require nucleic acid extraction and amplification before CRISPR detection.
This document is a lab report for a COVID-19 RT-PCR test. It indicates that the test for the sample from Miss. Nidhi Subash, a 24-year-old female, came back negative for SARS-CoV-2 RNA. The test was performed at Sankar's Healthcare Scans and Diagnostics in Alappuzha, Kerala, India and analyzed samples from a nasopharyngeal/oropharyngeal swab using real-time RT-PCR. The report provides background on SARS-CoV-2 and the test methodology, and notes that a negative result does not rule out infection and should be interpreted along with clinical observations.
1. Specific tests for diagnosing HIV infection include detecting viral antigens like p24, isolating the live virus, detecting viral nucleic acids through PCR, and detecting antibodies through ELISA and Western blot tests.
2. ELISA and rapid tests are used as initial screening tests to detect antibodies, while Western blot is a supplemental test used to confirm positive ELISA results.
3. In addition to specific tests, nonspecific tests like complete blood counts can provide clues about HIV infection by detecting signs of immune deficiency like low CD4+ T cell and platelet counts.
Corona is here to stay and it is predicted that over 70% of population will get the infection (fortunately not all will fall sick or very sick). (Recovery rate of over 74% & Death rate around 2%).
A lot of confusion exists regarding testing for covid and what test to do, when and how to interpret these tests.
Compiled by Dr. Narendra Malhotra
The COVID-19 pandemic is driving the need for rapid development of effective vaccines and therapies. Developing an effective vaccine requires an understanding of the adaptive immune response to SARS-CoV-2. An assay to measure circulating antibodies, specifically neutralizing antibodies (NAbs) that disrupt receptor-binding domain (RBD) and angiotensin-converting enzyme 2 (ACE2) binding to prevent SARS-COV-2 cell entry is an important research tool.
ImmunoRank is a high-throughput surrogate assay that semi-quantitative detects and ranks circulating SARS-CoV-2 neutralizing antibodies of all Ig classes (total antibody) in human plasma or serum. Highly correlated to FRNT or PRNT live virus tests, but is less laborious, takes only 80 minutes to complete, and does not require a BSL3 laboratory.
This study evaluated the use of reverse transcription loop-mediated isothermal amplification (RT-LAMP) for rapid detection of duck hepatitis A virus genotype C (DHAV-C). Primers were designed targeting the conserved 3D gene region of DHAV-C. RT-LAMP demonstrated high sensitivity and specificity for DHAV-C, with a detection limit about 100 times higher than reverse transcription PCR (RT-PCR). Testing of clinical samples showed RT-LAMP to be a simple, rapid, and cost-effective technique for early diagnosis and monitoring of DHAV-C infection.
1) Nanomaterials like gold nanoparticles, carbon nanotubes, and quantum dots show potential for virus detection through their unique optical and electrical properties.
2) Gold nanoparticle probes modified with influenza virus antibodies allow one-step, colorimetric detection of influenza without expensive equipment.
3) Carbon nanotube sensors could allow low-cost, routine monitoring for dengue virus detection by non-experts in places like clinics.
4) Quantum dot probes have been used to simultaneously track multiple viral proteins over time to study respiratory syncytial virus infection.
This document discusses diagnostic tests for COVID-19. It describes how samples are collected, typically nasopharyngeal or oropharyngeal swabs. Real-time reverse transcription polymerase chain reaction (RT-PCR) is the preferred testing method, using RNA extraction and fluorescent markers to detect viral DNA. Lateral flow and ELISA tests detect antibodies produced in response to infection. Treatment options discussed include chloroquine and favilavir. Several vaccine candidates are under development at universities and companies.
This document summarizes the development and validation of a one-step reverse transcription digital PCR (RT-dPCR) assay for the detection of SARS-CoV-2. Key points:
1. RT-dPCR was found to significantly improve the sensitivity of detection of SARS-CoV-2 in pharyngeal swab samples compared to RT-qPCR, reducing the false negative rate. RT-dPCR detected SARS-CoV-2 in 61 samples that were negative or equivocal by RT-qPCR.
2. When tested on 196 clinical samples, RT-dPCR increased the positive detection rate to 91% compared to 28% for RT-qPCR. RT-dPCR is well-su
Rapid and accurate detection of pathogens under field laboratory conditions is necessary for effective control of veterinary pathogens. Here we describe a prototype, portable, pathogen detection device developed for single tube, real-time, reverse transcription, loop-mediated isothermal amplification (RT-LAMP) using Laem-Singh virus (LSNV) as a model. LSNV is an RNA virus and a component cause of growth retardation in black tiger shrimp. We chose its RNA-dependent RNA polymerase
(RdRp) gene as the target for our tests. The basis for detection was measurement of turbidity arising from formation of a white, insoluble magnesium pyrophosphate precipitate byproduct upon amplification of the RdRp target sequence from 100 ng template RNA extracted from shrimp. The measurement device consisted of a heating block to maintain constant temperature in the RT-LAMP reaction for 8 Eppindorf sample tubes, a light-emitting diode (LED) light source providing red light emission at 650 nm wavelength to pass through sample tubes, a light dependent resistance (LDR) photo-detector and a software program to report turbidity events and could potentially be marketed for under US$3000. The device was connected to a computer to display real-time results in a variety of formats. The optimized protocol for LSNV detection consisted of incubation of the sample tubes at 65uC for 1 h during which turbidity was continuously measured, and quantitative results could be obtained by reaction time measurement. The sensitivity of detection was comparable to that of conventional nested RT-PCR and there was no cross reaction with other common shrimp viruses. The device was used for quantitative measurement of relative copy numbers of LSNV RdRp in 8 shrimp tissues and they were found to be highest in the gills followed in order by the lymphoid organ and hemolymph (p#0.05). This platform can be easily adapted for detection of other pathogens under field laboratory settings.
The document discusses guidelines for HIV testing and diagnosis. It covers algorithms, timing of laboratory markers, screening tests including ELISA and rapid tests, diagnostic challenges like false negatives and positives, and monitoring of patients including CD4 counts, viral load testing, and STI screening. Key points include using nucleic acid tests to diagnose infants, screening all pregnant women and high-risk groups for STIs, and monitoring HIV patients on ART through regular clinical and laboratory assessments.
Rapid Diagnostic Techniques for Detection of Infectious DiseasesMubashir Nazir
Early diagnosis always leads to better treatment, which is why the point of care testing holds an essential place in the healthcare setting. This PPT includes different categories of RDT according to their turnaround time and technology.
Molecular diagnostic techniques have revolutionized infectious disease diagnosis by allowing for faster, more sensitive detection of pathogens compared to conventional methods. The document discusses several molecular diagnostic techniques including non-amplified nucleic acid probes, amplified techniques like PCR and transcription-based amplification, and new techniques like microarrays and isothermal amplification. Molecular diagnostics can identify pathogens that cannot be cultured, detect low levels of pathogens, and provide results faster than conventional methods. This allows for more accurate patient management and control of disease transmission.
The document describes a rapid test kit for detecting canine parvovirus antigen in dog feces. Canine parvovirus causes inflammation of the intestines and other symptoms like vomiting and diarrhea. The test uses lateral flow immunoassay to detect parvovirus antigen in a fecal sample in 5-10 minutes. It has a sensitivity of 98.5% and specificity of 98% compared to ELISA tests. A positive result confirms parvovirus infection while a negative result does not rule it out, as virus shedding may be short.
Sensitivity assay of polymerase chain reaction for detection of canine adeno ...Alexander Decker
This study aimed to determine the minimum detection limit of canine adeno virus (CAV) in clinical samples using polymerase chain reaction (PCR). PCR was performed on 40 blood samples from different regions of India using reported primers for CAV detection. Positive PCR samples were serially diluted and used as templates to determine the lowest concentration detectable by PCR. The minimum detection limit was found to be a 1:1000 dilution, equivalent to 0.20 ng of DNA per microliter. The study demonstrated PCR is a sensitive method for early detection of CAV infection in clinical samples.
CRISPR system for COVID-19 diagnostics.pptxPeng-Wen Liu
CRISPR systems show promise for COVID-19 diagnosis. Current methods like PCR and antigen tests have limitations like long times, high costs, and need for trained operators. CRISPR uses Cas proteins and guide RNA to detect viral RNA or DNA. The Cas12 and Cas13 systems can detect single-stranded nucleic acids and generate a detectable signal through collateral cleavage of a reporter. Studies have used CRISPR/Cas12 to detect SARS-CoV-2 from clinical samples in under 2 hours using fluorescence or lateral flow strips. While CRISPR diagnostics are faster and cheaper than PCR, most platforms still require nucleic acid extraction and amplification before CRISPR detection.
Similar to immunoassay methods in covid_19 detection.pdf (20)
These lecture slides, by Dr Sidra Arshad, offer a simplified look into the mechanisms involved in the regulation of respiration:
Learning objectives:
1. Describe the organisation of respiratory center
2. Describe the nervous control of inspiration and respiratory rhythm
3. Describe the functions of the dorsal and respiratory groups of neurons
4. Describe the influences of the Pneumotaxic and Apneustic centers
5. Explain the role of Hering-Breur inflation reflex in regulation of inspiration
6. Explain the role of central chemoreceptors in regulation of respiration
7. Explain the role of peripheral chemoreceptors in regulation of respiration
8. Explain the regulation of respiration during exercise
9. Integrate the respiratory regulatory mechanisms
10. Describe the Cheyne-Stokes breathing
Study Resources:
1. Chapter 42, Guyton and Hall Textbook of Medical Physiology, 14th edition
2. Chapter 36, Ganong’s Review of Medical Physiology, 26th edition
3. Chapter 13, Human Physiology by Lauralee Sherwood, 9th edition
Adhd Medication Shortage Uk - trinexpharmacy.comreignlana06
The UK is currently facing a Adhd Medication Shortage Uk, which has left many patients and their families grappling with uncertainty and frustration. ADHD, or Attention Deficit Hyperactivity Disorder, is a chronic condition that requires consistent medication to manage effectively. This shortage has highlighted the critical role these medications play in the daily lives of those affected by ADHD. Contact : +1 (747) 209 – 3649 E-mail : sales@trinexpharmacy.com
- Video recording of this lecture in English language: https://youtu.be/kqbnxVAZs-0
- Video recording of this lecture in Arabic language: https://youtu.be/SINlygW1Mpc
- Link to download the book free: https://nephrotube.blogspot.com/p/nephrotube-nephrology-books.html
- Link to NephroTube website: www.NephroTube.com
- Link to NephroTube social media accounts: https://nephrotube.blogspot.com/p/join-nephrotube-on-social-media.html
Does Over-Masturbation Contribute to Chronic Prostatitis.pptxwalterHu5
In some case, your chronic prostatitis may be related to over-masturbation. Generally, natural medicine Diuretic and Anti-inflammatory Pill can help mee get a cure.
Integrating Ayurveda into Parkinson’s Management: A Holistic ApproachAyurveda ForAll
Explore the benefits of combining Ayurveda with conventional Parkinson's treatments. Learn how a holistic approach can manage symptoms, enhance well-being, and balance body energies. Discover the steps to safely integrate Ayurvedic practices into your Parkinson’s care plan, including expert guidance on diet, herbal remedies, and lifestyle modifications.
Histololgy of Female Reproductive System.pptxAyeshaZaid1
Dive into an in-depth exploration of the histological structure of female reproductive system with this comprehensive lecture. Presented by Dr. Ayesha Irfan, Assistant Professor of Anatomy, this presentation covers the Gross anatomy and functional histology of the female reproductive organs. Ideal for students, educators, and anyone interested in medical science, this lecture provides clear explanations, detailed diagrams, and valuable insights into female reproductive system. Enhance your knowledge and understanding of this essential aspect of human biology.
Muktapishti is a traditional Ayurvedic preparation made from Shoditha Mukta (Purified Pearl), is believed to help regulate thyroid function and reduce symptoms of hyperthyroidism due to its cooling and balancing properties. Clinical evidence on its efficacy remains limited, necessitating further research to validate its therapeutic benefits.
2. rRT_PCR (NAAT)
the sample is taken
from sputum, throat
swab, and secretion of
the lower respiratory
tract.
problems
it is time-consuming (4 - 6 h)
it also needs costly specialist
equipment and skillful
laboratory staff.
FN results due to low viral load
in the upper respiratory may
occur using RT_pcr analysis.
the peak of viral load in upper
respiratory tact secretions is
within the first week of
symptoms and can become
undetectable by 14 days.
reference standard method
detection of unique sequences of
the virus RNA
PCR-based techniques are methods
that rely on the polymerase chain
reaction (PCR) to amplify stretches
of DNA by creating many identical
or near-identical copies.
3. fast
lower cost
high-throughput
less workload
diagnosis of patients more than
diagnosis of patients with negative RT-
PCR test and strong epidemiological and
clinical evidences.
7 days after the onset of symptoms
Strengths + Weaknesses -
serological tests
sero
conversion usually
occurred at 3–14 d.p.o, so early
diagnosis of COVID-19 using
only serological tests may not
be possible.
the specificity and sensi
tivity
of serological tests are
affected by infection time.
4. Four major struc
tural proteins, including membrane (M), envelope (E),
nucleocapsid (N), and spike (S), as well as non-structural proteins, are
encoded by coronavirus RNA.
N and RBD of S protein are the most
common antigens that can be used as
an immobilized antigen for creating a
serological COVID-19 diagnostic test
7. ELISA
ELISA
To detect patient antibodies, a known
capture antigen is immobi
lized on the
plate and then the patient’s antibodies in
a sample bind to the immobilized capture
antigen.
an enzyme-labeled detection antibody
specific to any antibody isotypes (i.e., IgG,
IgM, etc.) forms a complex with the
capturedpatientantibodies.
the interaction of enzyme (usually
horseradish peroxidase) and its sub‐
strate causes a colorimetric change
that can be quantified and
correlated to the presence or
concentration of the antibody.
1.
2.
3.
method
+
ELISA is not a very expensive method.
It can be simply operated and made high
throughput with an automated work
station.
_
this technique is time-consuming and
at risk of contamination. It also needs
infrastructure and qua
lified personnel
8. CLIAs
In the first step of the
chemiluminescence-based method,
SARS-CoV-2 specific IgA, IgM and
IgG in sera were captured via SARS-
CoV-2 antigen (N or RBD)-coated
magnetic particles.
a second acridinium-conjugated
antibody that detects human IgA,
IgM, or IgG was applied. Reaction of
acridinium with its substrates
caused strong chemiluminescence.
the diagnosed chemiluminescent
signal over the background was
measured as relative light units
The principle of a CLIA is the same
as an ELISA with shorter incubation
steps and no need for a reagent to
stop the enzymatic reaction
1.
2.
3.
Requiring supporting
chemiluminescence
instruments and qualified
personnel are the
disadvantages of CLIA.
It was demonstrated that
the performance of CLIA
for detecting IgM is not
suitable enough.
It was found that CLIA
against multi-antigens (N
+ S proteins) has higher
specificity than single
antigen proteins
Chemiluminescence is a light-emitting process in
which chemical reactions are the energy source
for gener
ating the electronically excited state.
This laboratory technique benefits from the
specificity of the immune response and also the
sensitivity of the lumi
nescence reaction.
9. LFIA
+
_
multiple analytes
can be detected
by different test
lines on a device
of LFIA
simple
operation
low cost
high speed
low specificity and sensitivity
10. neutralization assay
virus NT assay is the gold standard for the evaluation
of protective immunity against SARS-CoV-2.
the interaction between RBD and ACE2 recep
tor is
inhibited by highly specific nAbs in patient or animal
sera in an ELISA plate well.
Advantages of sVNT include its ability to detect total
SARS-CoV-2 nAbs in an isotype-independent and
species-independent manner.
Virus neutralization is a specialized type of
immunoassay because it does not detect all
antigen–antibody reactions. It only detects
antibody that can block virus replication.
11. ELISA CLIA LFIA NT assay
diagnosis time 1.5 - 2.5 h 0.5 h 10 -15 min 1 - 2 h
sensivity 65 - 98 % 77 - 100 % 69 _ 93 % 95 _ 100 %
specifity 71 _ 100 % 90 _ 100 % 80 - 100 % 100 %
disadvantage time consuming
require chemiluescence
equipment
low sensivity during early
infection
generation of neutrilizing AB
has a slower onset and rise in
the primary immune
response.
quantification of the
colorimetric change
diagnosing the
chemiluminescent signal over
the background
visual observation of colored
band
detecting nABs which block
virus replication.
comparison of immunoassay methods
12. conclusion
the fundamental methodology for in vitro diagnosis of SARS-CoV-2 infection is based
on NAAT and It is not possible to properly diagnose acute disease by IgG testing.
serology tests are useful for retrospective identification of COVID-19 patients and for
contact tracing purposes when doubt of false-positive or false-negative PCR results
has existed.
Since serology tests reached their highest positive rates 14 days after symptom onset
and the sensitivity of RT-PCR was decreased at this time, serology testing could be
consid
ered as a part of the diagnostic panel two-week post-symptom onset.
13. Resource : A comparative
review of immunoassays for
COVID-19 detection (2021)
by Elham Mohit, Zahra
Rostami & Hossein Vahidi
article
link