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Michael Zentner, HUBzero Platform Director
Research Data Alliance
Virtual Research Environments
Working Group
Pisa, Italy February 2018
Question Posed:



What is a Virtual Research Environment/
Science Gateway/Virtual Lab for you/your
community? Can you give a definition of it?
What are the distinguishing features
contributing to make a “system” a VRE?
Community
Interaction
Knowledge
Dissemination
Resource, Data, Analytics &
Application Sharing
Copyright 2015 Michael G. Zentner
Simulation
Tool Hosting
Online Resources
CMSPublishing
Interactive

Collaboration
Analytics
Copyright 2015 Michael G. Zentner
Community
Interaction
Collaboration is more than message boards,
shared file areas, Q&A, etc.
INFUSION PUMP ALERTS
Setting
Drug Limit Library
Database
Alert
PROBLEM
PROBLEM
PROBLEM
PROBLEM
PROBLEM
BREAKINGTRADITION
ResearchersPractitioners
A 2-SIDED DATA MARKET
ResearchersPractitioners
A 2-SIDED DATA MARKET
ResearchersPractitioners
A 2-SIDED DATA MARKET
ResearchersPractitioners
Labs
Competing hospitals all
identify themselves to each
other for direct comparison
to improve medical safety!
HOSPITAL ADMINISTRATORS
• Benchmarking against peer institutions
60	
65	
70	
75	
80	
85	
90	
95	
100	
Jan-13	Feb-13	M
ar-13	Apr-13	M
ay-13	Jun-13	Jul-13	Aug-13	Sep-13	Oct-13	Nov-13	Dec-13	Jan-14	Feb-14	M
ar-14	Apr-14	M
ay-14	Jun-14	Jul-14	Aug-14	Sep-14	
Compliance	Percentage	
Aurora	Hospitals	and	Medical	Centers	 Cameron	Memorial	Community	Hospital	
Eskenazi	Hospital	 University	of	Iowa	Hospitals	and	Clinics	
VREs Should Enable
Contextually Relevant
Collaboration
Knowledge
Dissemination
SHARING / PUBLISHING
Select Content
SHARING / PUBLISHING
Select Content
SHARING / PUBLISHING
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SHARING / PUBLISHING
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SHARING / PUBLISHING
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SHARING / PUBLISHING
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SHARING / PUBLISHING
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Describe the Publication
SHARING / PUBLISHING
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Describe the Publication
SHARING / PUBLISHING
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Describe the Publication
SHARING / PUBLISHING
Select Content
Describe the Publication
SHARING / PUBLISHING
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Describe the Publication
SHARING / PUBLISHING
Select Content
Describe the Publication
Choose a License
SHARING / PUBLISHING
Select Content
Describe the Publication
Choose a License
SHARING / PUBLISHING
Select Content
Describe the Publication
Choose a License
SHARING / PUBLISHING
Select Content
Describe the Publication
Choose a License
Receive a DOI
SHARING / PUBLISHING
SHARING / PUBLISHING
Schred is NOT a
paper…
…it is a simulation
tool…
…starting to get
recognition as if it
were a paper.
VREs Should Support
the Reputations of
their Participants
Knowledge
Dissemination
VREs Should Provide
Accessible Ways to
Gain Knowledge
Knowledge
Dissemination
Data Analytic Application
Studying the Fate of Zebra Fish
Coded in Django,

Minimal Changes
Mean Diameter vs
Mean Hydrodynamic Diameter
VREs Should Provide
Simple Ways to
Richly Disseminate
Content
Resource, Data, Analytics &
Application Sharing
Copyright 2015 Michael G. Zentner
Over 450 Available Simulation Tools
No Download Required

Access to Shared Compute Resources
VRE Capabilities
Should be Accessible
as Services
VREs AS A SERVICE
(IMAGES OF GRANTA PRODUCT REMOVED AS I NEED
AGREEMENT FROMTHEVENDORTO DISTRIBUTE
PRODUCT IMAGES
Simulation
Tool Hosting
Online Resources
CMSPublishing
Interactive

Collaboration
Analytics
Copyright 2015 Michael G. Zentner
Activity Logs…plus…
Location (IP address)
Resource
…a deeper view of impact analytics
Pattern 1
Pattern 2
Users
Time
NANOHUB CLASSROOM ANALYTICS
Large Group
Multiple Tools
Moderate Re-use
NANOHUB CLASSROOM ANALYTICS
Large Group
Single Tool
Heavy Re-use
NANOHUB CLASSROOM ANALYTICS
Large Group
Multiple Tool
Periodic
Re-use
NANOHUB CLASSROOM ANALYTICS
Small Groups
Intense or
Periodic Use
>35,100 students use tools in classrooms,
>1780 classes, 185 institutions
1: Impact - Migration
Credit: Dwight McKay
NANOHUB RESEARCH 

TRANSLATION ANALYTICS
1: Impact - Adoption
NANOHUB RESEARCH 

TRANSLATION ANALYTICS
1: Impact - Adoption
NANOHUB RESEARCH 

TRANSLATION ANALYTICS
> 1,980 papers cite nanoHUB
> 30,900 secondary citations
h-index of 82VREs Should be
Capable of Measuring
Impact for their Users
and Sponsors
Question Posed:



Can you give concrete examples of existing
Virtual Research Environments?
What are the mandatory functionalities that
Virtual Research Environments should offer?
What are the desired functionalities that
Virtual Research Environments should offer?
Questions Posed:
Differing
“Personalities”
It’s not what must or should be there, 

it should be 

whatever mix of these flavors is needed by
the community to gain usage 

and a 

facility to create and adapt that mix easily.
It’s not what must or should be there, 

it should be 

whatever mix of these flavors is needed by
the community to gain usage 

and a 

facility to create and adapt that mix easily.
Community
Interaction
Knowledge
Dissemination
Resource, Data, Analytics &
Application Sharing
Copyright 2015 Michael G. Zentner
Simulation
Tool Hosting
Online Resources
CMSPublishing
Interactive

Collaboration
Analytics
Built as an infrastructure in a way that allows
easy on the fly configuration by the community.
Copyright 2015 Michael G. Zentner
Simulation
Tool Hosting
Online Resources
CMSPublishing
Interactive

Collaboration
Analytics
New Delivery
EnvironmentsContinued

Innovations
New Productivity
Tools
New Service
Integrations
Building as an infrastructure that allows easy
integration with others.
VREs Should be
Integration Points
Copyright 2015 Michael G. Zentner
Question Posed:



What services (and how) “service
providers” (including Research
Infrastructures) should offer to facilitate the
development of VREs?
AFFILIATED SERVICES
• Marketing Analysis
• “Sales” Coaching
• Planning for the Future
How can we help make our clients
more successful?
MANY HAVETRAVERSED
SOME SIMILAR PATHS
Getting Started
On the Right Foot
Guidance as

Execution Begins
A “Storefront” for

Interoperable

Components
Community

Formation &

Fostering
Training the

Next Generation
GATEWAYS 2018
Science Gateways Bootcamp
May 14-18, 2018 in Austin, Texas
June 11-12 in Edinburgh, Scotland
www.sciencegateways.org
Gateways 2018
Austin, Texas, September 25-27
Science
Gateways
Bootcamp
5 full days
of activity
A word about

“Science Gateways”

and

“Virtual Research Environments”
Must All Science Pass
Through This Gateway?
Must All Science Be
Contained In This
Environment?
INNOVATING FORTHE WEB
INNOVATING FORTHE WEB
INNOVATING FORTHE WEB
Image of my desktop removed because I’m not sure whether it
contained sensitive documents at the time.
Background image of my desktop removed because I’m not sure
whether it contained sensitive documents at the time.
Analytics
Simulation
Tool Hosting
Online Resources
CMSPublishing
Interactive

Collaboration
New Delivery
EnvironmentsContinued

Innovations
New Productivity
Tools
New Service
Integrations
Copyright 2015 Michael G. Zentner
Analytics
BRINGING CONSUMER

ANALYTICSTO SCIENCE
BRINGING CONSUMER

ANALYTICSTO SCIENCE
Copyright 2015 Michael G. Zentner
BRINGING PEOPLETOGETHER WITH
SMART USE OF DATA
Small Digressions
Copyright 2015 Michael G. Zentner
BRINGING PEOPLETOGETHER WITH
SMART USE OF DATA
Small Digressions New Directions
Copyright 2015 Michael G. Zentner
BRINGING PEOPLETOGETHER WITH
SMART USE OF DATA
Small Digressions New Directions
New Fields Copyright 2015 Michael G. Zentner
BRINGING PEOPLETOGETHER WITH
SMART USE OF DATA
Small Digressions New Directions
New Fields ????Copyright 2015 Michael G. Zentner
BRINGING PEOPLETOGETHER WITH
SMART USE OF DATA
VREs Should be
“Connection
Machines”
Preservation
New York Times

10 November 1919
“This is not even a
conspiracy theory,”
Irving said. “The Earth
is flat.” 
"If you ask a parent of
an autistic child if they
want the measles or
the autism, we will
stand in line for the
f***ing measles."
“We've made some
changes to EPA.gov. If
the information you are
looking for is not here,
you may be able to find
it on the EPA Web
Archive or the January
19, 2017 Web
Snapshot.”
VRE Operators Should
Act in Ways that
Preserve Science
Connections by Analytics
Integrating the Best Tools

Innovating in Preservation

Sustainability by Repeatability
Copyright 2015 Michael G. Zentner

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