Structure of Proteins
PRIMARY STRCUTURE
o Peptide bond
o Properties of proteins
o Biologically important peptides
Peptide bond
 covalent
 rigid and planar with partial double bond in character.
 trans configuration.
 Both -C=O and –NH groups of peptide bonds are polar
 involved in hydrogen bond formation.
Peptides containing >10 amino acids - polypeptides.
Glutathione
WHAT IS THE AVERAGE NUMBER OF HIGH ENERGY BONDS REQUIRED
FOR THE SYNTHESIS OF ONE PEPTIDE BOND
A 1
B 2
C 3
D 4
OVAL ALBUMIN GLOBULAR
INSULIN
SHAPE
ratio Lys + Arg/( glu + Asp)
ratio > 1 Basic proteins.
Acidic proteins, ratio <1 .
Precipitation of proteins
. Milk forms a solid curd on standing
· bacteria in milk grows
· forms lactic acid
pl 4.6 For casein
· becomes isoelectric
· coagulates into a solid curd
PRECIPITATION AT pI
Higher is the protein molecular weight, the lower is the salt required
for precipitation
globulins are precipitated by half saturation with ammonium sulfate
albumin is precipitated by full saturation.
Salting out procedure is Used for separating serum albumins from
globulin
Biuret Test
Chemical Reaction in the Biuret test
NINHYDRIN REACTION GIVES A PURPLE COLOUR AND EVOLVES CO2
A WITH PEPIDE BONDS
B WITH HISTAMINE
C WITH ASPARAGINE
D WITH SEROTONIN
INTACT PEPTIDE BOND IS NECESSARY FOR WHICH
TEST
A UV DIFFRACTION
B NINHYDRIN
C DIAZO REACTION
D ALL
MILLONS TEST IS POSITIVE IN
A MAPLE SYRUP URINE
DISEASE
B HARTNUP DISEASE
C WILSONS DISEASE
D TYROSINOSIS
MILLONS TEST IS USED IN THE DETECTION OF
A PHENYL ALANINE
B CYSTINE
C TYROSINE
D TRYPTOPHAN
CYSTINURIA IS DIAGNOSED BY WHICH TEST
A FOLINS COICALTEAUS TEST
B MILLONS TEST
C XANTHOPROTEIC TEST
D CYANIDE NITROPROSSIDE TEST
HOPKINS COLE REACTION DETECTS AMINO
ACID CONTAINING INDOLE RING
A ARGININE
B TRYPTOPHAN
C TYROSINE
D HISTIDINE
BIOLOGICALLY IMPORTANT PEPTIDES
Meister cycle in intestine
Glutathione is involved in detoxication
sorganophosphates,nitro compounds are converted to
mercapturic acids
WHICH OF THE FOLLOWING IS TRUE ABOUT GLUTATHIONE
A CONTAINS SULFHYDRYL GROUPS
B FORMS MET Hb FROM Hb
C TRANSPORT AMINO ACID ACROSS CELL MEMBRANE
D PART OF ENZYMES
REGARDING GLUTATHIONE WHICH OF THE FOLLOWING IS TRUE
A IT HELPS THE ABSORPTION OF AMINO ACIDS
B IT INACTIVATES SOME ENZYMES
C IT HELPS IN MEMBRANE TRANSPORT
D IT HELPS IN CONJUGATION REACTIONS
IN GLUTATHIONE WHICH AMINO ACID IS REDUCING
A GLUTAMIC ACID
B GLYCINE
C CYSTEINE
D ALANINE
GASTRIN
SECRETIN
Vassopressin
Vasopressin
• Vasopressin is also called ADH (antidiuretic hormone)
• Vasopressin increases blood pressure and inhibits
diuresis.
• It constricts blood vessels rising the blood pressure and
affecting water and electrolyte balance
Gramicidin S
Gramicidin S is an antibiotic for topical
use and effective for gram-positive
bacterial infection.
TRH
Denaturation
LOST : quaternary , tertiary , secondary structure
INTACT : PEPTIDE BOND
DISORGANISATION OF NATIVE PROTEIN STRUCTURE
PHYSICAL , CHEMICAL , BIOLOGICAL PROPERTIES CHANGED
SOLUBILITY ↓ VISCOSITY ↑ ACTIVITY ↓
,
Denaturationis associated with increase in ionizable and
sulfhydryl groups of protein.
due to loss of hydrogen and disulfide bonds
Denaturation Usually irreversible
cooking eggs
Denatured protein is easily digested.
increased exposure of peptide bonds to enzyme
Cooking , HCL causes protein denaturation
Protein is easily digested by PEPSIN
haemoglobin
salicylate
Flocculation : protein precipitation at isoelectric pH
precipitate is referred to as flocculum.
Casein (milk protein) can be easily precipitated when adjusted
to isoelectric pH 4.6 by dilute acetic acid.
Flocculation is reversible.
On application of heat, flocculum can be converted into an
Irreversible mass, coagulum.
Coagulation : The term 'coagulum' refers to semi-solid
viscous precipitate of protein.
lrreversible denaturation
lowest temperature at isoelectric pH.
Albumins and globulins are coagulable proteins.
Heat coagulation test used to detect albumin in urine.
Agents of denaturation
Physical agents : Heat, violent shaking, X-ravs, UV rays
Chemical agents : Acids, alkalies, organic solvents (ether,
alcohol), salts of heavy metals (Pb, Hg), urea, salicylate.
All are true about denaturation except
A all bonds are disrupted except peptide bond
B all structures are disrupted except primary structure
C function is preserved
D on removal of denaturing force renaturation
normally does not occur
HEAT TEST FOR PROTEIN
 Take 2/3 of test tube full of urine sample hold the test tube from
the bottom and heat the top portion of tube.
 add a drop of 1%acetic acid .do not mix
 Normally when urine ph is acidic
 White precipitate in the heated portion
 indicating the presence of albumin
if urinary ph is alkaline
 proteins may not be precipitated owing to formation of
meataproteins which are not precipitated on heating
 phosphates will be precipitated and give a false positive test
 on acidification with 1% acetic acid drop by drop
 phosphate will disappear and
 precipitate of albumin will appear on acidification
PROTEIN ESTIMATION TEST IS CONFUSED WITH
A PHOSPHATE
B NITRATE
C SULPHATE
D BILE SALTS
PROTEIN STRUCTURE AND BIOLOGICALLY IMPORTANT PEPTIDES

PROTEIN STRUCTURE AND BIOLOGICALLY IMPORTANT PEPTIDES

  • 1.
  • 2.
    o Peptide bond oProperties of proteins o Biologically important peptides
  • 4.
    Peptide bond  covalent rigid and planar with partial double bond in character.  trans configuration.  Both -C=O and –NH groups of peptide bonds are polar  involved in hydrogen bond formation. Peptides containing >10 amino acids - polypeptides.
  • 5.
  • 6.
    WHAT IS THEAVERAGE NUMBER OF HIGH ENERGY BONDS REQUIRED FOR THE SYNTHESIS OF ONE PEPTIDE BOND A 1 B 2 C 3 D 4
  • 8.
  • 9.
    ratio Lys +Arg/( glu + Asp) ratio > 1 Basic proteins. Acidic proteins, ratio <1 .
  • 10.
  • 12.
    . Milk formsa solid curd on standing · bacteria in milk grows · forms lactic acid pl 4.6 For casein · becomes isoelectric · coagulates into a solid curd PRECIPITATION AT pI
  • 16.
    Higher is theprotein molecular weight, the lower is the salt required for precipitation globulins are precipitated by half saturation with ammonium sulfate albumin is precipitated by full saturation. Salting out procedure is Used for separating serum albumins from globulin
  • 18.
  • 19.
    Chemical Reaction inthe Biuret test
  • 20.
    NINHYDRIN REACTION GIVESA PURPLE COLOUR AND EVOLVES CO2 A WITH PEPIDE BONDS B WITH HISTAMINE C WITH ASPARAGINE D WITH SEROTONIN
  • 21.
    INTACT PEPTIDE BONDIS NECESSARY FOR WHICH TEST A UV DIFFRACTION B NINHYDRIN C DIAZO REACTION D ALL
  • 22.
    MILLONS TEST ISPOSITIVE IN A MAPLE SYRUP URINE DISEASE B HARTNUP DISEASE C WILSONS DISEASE D TYROSINOSIS
  • 23.
    MILLONS TEST ISUSED IN THE DETECTION OF A PHENYL ALANINE B CYSTINE C TYROSINE D TRYPTOPHAN
  • 24.
    CYSTINURIA IS DIAGNOSEDBY WHICH TEST A FOLINS COICALTEAUS TEST B MILLONS TEST C XANTHOPROTEIC TEST D CYANIDE NITROPROSSIDE TEST
  • 25.
    HOPKINS COLE REACTIONDETECTS AMINO ACID CONTAINING INDOLE RING A ARGININE B TRYPTOPHAN C TYROSINE D HISTIDINE
  • 26.
  • 28.
  • 29.
    Glutathione is involvedin detoxication sorganophosphates,nitro compounds are converted to mercapturic acids
  • 30.
    WHICH OF THEFOLLOWING IS TRUE ABOUT GLUTATHIONE A CONTAINS SULFHYDRYL GROUPS B FORMS MET Hb FROM Hb C TRANSPORT AMINO ACID ACROSS CELL MEMBRANE D PART OF ENZYMES
  • 31.
    REGARDING GLUTATHIONE WHICHOF THE FOLLOWING IS TRUE A IT HELPS THE ABSORPTION OF AMINO ACIDS B IT INACTIVATES SOME ENZYMES C IT HELPS IN MEMBRANE TRANSPORT D IT HELPS IN CONJUGATION REACTIONS
  • 32.
    IN GLUTATHIONE WHICHAMINO ACID IS REDUCING A GLUTAMIC ACID B GLYCINE C CYSTEINE D ALANINE
  • 33.
  • 34.
  • 35.
  • 36.
    Vasopressin • Vasopressin isalso called ADH (antidiuretic hormone) • Vasopressin increases blood pressure and inhibits diuresis. • It constricts blood vessels rising the blood pressure and affecting water and electrolyte balance
  • 40.
    Gramicidin S Gramicidin Sis an antibiotic for topical use and effective for gram-positive bacterial infection.
  • 41.
  • 43.
    Denaturation LOST : quaternary, tertiary , secondary structure INTACT : PEPTIDE BOND DISORGANISATION OF NATIVE PROTEIN STRUCTURE PHYSICAL , CHEMICAL , BIOLOGICAL PROPERTIES CHANGED SOLUBILITY ↓ VISCOSITY ↑ ACTIVITY ↓ ,
  • 44.
    Denaturationis associated withincrease in ionizable and sulfhydryl groups of protein. due to loss of hydrogen and disulfide bonds
  • 45.
    Denaturation Usually irreversible cookingeggs Denatured protein is easily digested. increased exposure of peptide bonds to enzyme Cooking , HCL causes protein denaturation Protein is easily digested by PEPSIN
  • 46.
  • 47.
    Flocculation : proteinprecipitation at isoelectric pH precipitate is referred to as flocculum. Casein (milk protein) can be easily precipitated when adjusted to isoelectric pH 4.6 by dilute acetic acid. Flocculation is reversible. On application of heat, flocculum can be converted into an Irreversible mass, coagulum.
  • 48.
    Coagulation : Theterm 'coagulum' refers to semi-solid viscous precipitate of protein. lrreversible denaturation lowest temperature at isoelectric pH. Albumins and globulins are coagulable proteins. Heat coagulation test used to detect albumin in urine.
  • 49.
    Agents of denaturation Physicalagents : Heat, violent shaking, X-ravs, UV rays Chemical agents : Acids, alkalies, organic solvents (ether, alcohol), salts of heavy metals (Pb, Hg), urea, salicylate.
  • 50.
    All are trueabout denaturation except A all bonds are disrupted except peptide bond B all structures are disrupted except primary structure C function is preserved D on removal of denaturing force renaturation normally does not occur
  • 51.
    HEAT TEST FORPROTEIN  Take 2/3 of test tube full of urine sample hold the test tube from the bottom and heat the top portion of tube.  add a drop of 1%acetic acid .do not mix  Normally when urine ph is acidic  White precipitate in the heated portion  indicating the presence of albumin
  • 52.
    if urinary phis alkaline  proteins may not be precipitated owing to formation of meataproteins which are not precipitated on heating  phosphates will be precipitated and give a false positive test  on acidification with 1% acetic acid drop by drop  phosphate will disappear and  precipitate of albumin will appear on acidification
  • 53.
    PROTEIN ESTIMATION TESTIS CONFUSED WITH A PHOSPHATE B NITRATE C SULPHATE D BILE SALTS