These are the slides for my talk presented at the STI 2016 in Valencia. The paper dx.doi.org/10.1016/j.joi.2016.04.015 contains additional information regarding this presentation.
Presentation covering introduction to bibliometrics. Suggested audience: PGRs, early career researchers, academic staff wanting refresher, research support staff
Presentation covering introduction to bibliometrics. Suggested audience: PGRs, early career researchers, academic staff wanting refresher, research support staff
Bibliometrics literally means "book measurement" but the term is used about all kinds of documents (with journal articles as the dominant kind of document).
What is measured are not the physical properties of documents but statistical patterns in variables such as authorship, sources, subjects, geographical origins, and citations.
The Value of Newspapers in Research: Newspapers Citations Analysis, August 2018ProQuest
This SlideShare offers data and highlights from a August 2018 report conducted in partnership between ProQuest and the Oxford Internet Institute. Eric T. Meyer, currently the Dean of the School of Information at University of Texas, Austin,and formerly a Professor of Social Informatics and Director of Graduate Studies at Oxford Internet Institute, conducted the data collection and analysis. Four newspaper titles were selected for evaluation and analysis in this report: The New York Times, The Wall Street Journal,The Washington Post, and The Guardian. Scopus was used as the source for the data examined. The objective of this study was to better understand the importance of newspapers in scholarly articles and identify trends across newspaper titles and subject disciplines. This study examines the frequency of newspaper citations in scholarly journal articles and also reveals the disciplines in which scholars most often use newspapers as a source for academic research.
Conférence au workshop “Women and
men in science: Do we need gender metrics?” du 27 avril 2017 à l'Université Toulouse 2 - Jean Jaurès
https://www.irit.fr/~Guillaume.Cabanac/docs/workshopGenderScienceLabexSMS2017.pdf
Researcher KnowHow: Introduction to bibliometrics with Charles MartinezLivUniLibrary
Charles Martinez delivered a session on Scopus, SciVal and bibliometrics published. It includes an in-depth look at using Scopus and how to track the impact of your research using SciVal. Charles also gave some words of advice about responsible use of metrics.
Broad altmetric analysis of Mendeley readerships through the ‘academic status...Zohreh Zahedi
This study explores the readerships in Mendeley across 5 major fields of science in Leiden Ranking 2013 for a data set of 1,107,917 Web of Science (WoS) publications (reviews and articles) from all disciplines published in 2011 with DOI available. The main objective is to know if there are different patterns in terms of readership and citation impact depending on the different ‘Academic Status’ of Mendeley readers. In case of finding different pattern, this could help to introduce the possibility of considering the different users as potential predicting elements of citations.
The current study is built upon the previous study of analyzing Mendeley users with focus on the types of the different Mendeley users (known users) in order to explore their patterns of saving publications in terms of subject fields, citation and readership impact. Particular attention has been paid to the extent to which the readerships of the publications saved by the different types of users in Mendeley correlate with their citation indicators and across 5 major fields of science in the Leiden Ranking (LR); also, the potential of identifying highly cited papers by different user types in Mendeley has been investigated. For this reason, we present an exploratory analysis of the patterns of reading of the different types of users in Mendeley and we study their relationship with citations and across LR fields.
Bibliometrics literally means "book measurement" but the term is used about all kinds of documents (with journal articles as the dominant kind of document).
What is measured are not the physical properties of documents but statistical patterns in variables such as authorship, sources, subjects, geographical origins, and citations.
The Value of Newspapers in Research: Newspapers Citations Analysis, August 2018ProQuest
This SlideShare offers data and highlights from a August 2018 report conducted in partnership between ProQuest and the Oxford Internet Institute. Eric T. Meyer, currently the Dean of the School of Information at University of Texas, Austin,and formerly a Professor of Social Informatics and Director of Graduate Studies at Oxford Internet Institute, conducted the data collection and analysis. Four newspaper titles were selected for evaluation and analysis in this report: The New York Times, The Wall Street Journal,The Washington Post, and The Guardian. Scopus was used as the source for the data examined. The objective of this study was to better understand the importance of newspapers in scholarly articles and identify trends across newspaper titles and subject disciplines. This study examines the frequency of newspaper citations in scholarly journal articles and also reveals the disciplines in which scholars most often use newspapers as a source for academic research.
Conférence au workshop “Women and
men in science: Do we need gender metrics?” du 27 avril 2017 à l'Université Toulouse 2 - Jean Jaurès
https://www.irit.fr/~Guillaume.Cabanac/docs/workshopGenderScienceLabexSMS2017.pdf
Researcher KnowHow: Introduction to bibliometrics with Charles MartinezLivUniLibrary
Charles Martinez delivered a session on Scopus, SciVal and bibliometrics published. It includes an in-depth look at using Scopus and how to track the impact of your research using SciVal. Charles also gave some words of advice about responsible use of metrics.
Broad altmetric analysis of Mendeley readerships through the ‘academic status...Zohreh Zahedi
This study explores the readerships in Mendeley across 5 major fields of science in Leiden Ranking 2013 for a data set of 1,107,917 Web of Science (WoS) publications (reviews and articles) from all disciplines published in 2011 with DOI available. The main objective is to know if there are different patterns in terms of readership and citation impact depending on the different ‘Academic Status’ of Mendeley readers. In case of finding different pattern, this could help to introduce the possibility of considering the different users as potential predicting elements of citations.
The current study is built upon the previous study of analyzing Mendeley users with focus on the types of the different Mendeley users (known users) in order to explore their patterns of saving publications in terms of subject fields, citation and readership impact. Particular attention has been paid to the extent to which the readerships of the publications saved by the different types of users in Mendeley correlate with their citation indicators and across 5 major fields of science in the Leiden Ranking (LR); also, the potential of identifying highly cited papers by different user types in Mendeley has been investigated. For this reason, we present an exploratory analysis of the patterns of reading of the different types of users in Mendeley and we study their relationship with citations and across LR fields.
Editor of Colloid and Surfaces B. What do I, as an editor, look for in order to reach a favourable decision on a manuscript?
Prof. dr. ir. Henk Busscher
Head of Department of Biomedical Engineering, UMCG
'Understanding and benefiting from the publishing process'
Publishing Connect workshop Lancaster delivered by Anthony Newman, Senior Publisher, Elsevier.
Types of scientific publications
The different types of research papers published
Considerations before writing
Choosing the right journal
Writing using correct language
The structure of the manuscript
The submission and review procedure
Author responsibilities: publishing ethics and plagiarism
How to use information resources as a tool for authors (Scopus)
Slides shared with the permission of the speaker.
Similar to Normalization of Mendeley reader impact on the reader- and paper-side (20)
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
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(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
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Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
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This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
2. Introduction
Altmetrics
Alternative metrics, closely related to article level metrics
Facebook: posts, likes, ...
Twitter: tweets, retweets, ...
Mendeley, CiteULike, Zotero, ...: readers (reader counts,
bookmarks, saves, ...)
News outlets: stories, mentions
Blogs: stories, mentions
...
Two major fields of altmetrics research
1. Meaning of altmetrics counts
2. Normalization of altmetrics counts
Mendeley reader impact Robin Haunschild et al. 2
3. Introduction
Mendeley
Online reference manager
Desktop and mobile applications
Social, academic networking component
API for user statistics
Global web traffic rank from Alexa
Mendeley reader impact Robin Haunschild et al. 3
4. Introduction
Research Questions
1. Is normalization important for Mendeley reader counts?
2. Which normalization procedures are possible?
3. Can analogous versions to citing-side and cited-side
normalizations be done using Mendeley reader counts?
4. How do the methods differ?
Mendeley reader impact Robin Haunschild et al. 4
5. Data set
Data set
DOIs from WoS papers from 2012 (Na = 1, 133, 224 articles
and Nr = 64, 960 reviews)
Search via Mendeley API for DOI in December 2014
Overall 94.8% of the articles and 96.6% of the reviews were
found on Mendeley
9,352,424 Mendeley reader counts for the articles and
1,335,764 for the reviews.
0.05% of the article readers and 0.04% of the review
readers did not share their (sub-)disciplinary information
Mendeley reader impact Robin Haunschild et al. 5
6. Example data from Mendeley
Data available from Mendeley
Input DOI, PubMedID, ... (e.g., 10.1063/1.4769790, Insensitivity
of the error of the minimally empirical hybrid functional
revTPSSh to its parameters):
Total reader count (here: 9)
Reader count per academic status (here: 2 Researchers, 1
Other, 3 Professors, 2 PhD Students, and 1 Associate
Professor)
Reader count per Mendeley discipline (here: 1 in
Materials Science, 1 in Physics, 5 in Chemistry, 1 in Social
Sciences, and 1 in Economics)
Reader count per country (here: 1 in USA, 1 in the Vatican,
and 1 in South Korea)
Mendeley reader impact Robin Haunschild et al. 6
7. Mendeley readers per document type
Mendeley readers per article in the Mendeley disciplines
Mendeley reader impact Robin Haunschild et al. 7
8. Mendeley readers per document type (cont’d)
Mendeley readers per review in the Mendeley disciplines
Mendeley reader impact Robin Haunschild et al. 8
9. Mendeley readers per document type (cont’d)
Mendeley readers per article in the top WoS subject
categories
Mendeley reader impact Robin Haunschild et al. 9
10. Mendeley readers per document type (cont’d)
Mendeley readers per review in the top WoS subject
categories
Mendeley reader impact Robin Haunschild et al. 10
11. Cited-side and citing-side methods
Cited-side
1. Counting all citations a paper has received
2. Normalization of citation counts with respect to the
scientific field of the cited paper
Analogous version for Mendeley reader counts: paper-side
Citing-side
1. Counting all citations a paper has received separately for
each scientific field of the citing paper
2. Normalization of citation counts with respect to the scientific
field of the citing paper
Analogous version for Mendeley reader counts: reader-side
Mendeley reader impact Robin Haunschild et al. 11
12. Method
Paper-side Normalization
Average number of readers per paper (ρ) in a scientific field
(here: WoS subject category), document type, and publication
year:
ρc =
1
Nc
Nc
i=1
Ri (1)
Nc: Number of papers in a WoS subject category, document type,
and publication year
Ri : Number of reader counts of paper i
NRSi =
Ri
ρc
(2)
NRSi : Normalized Reader Score for paper i
Multiplicative (or fractional or full counting) for papers with WoS
subject categories
Mendeley reader impact Robin Haunschild et al. 12
13. Method
Paper-side Normalization (cont’d)
Average over a set of papers of a specific unit:
MNRS =
1
N
N
i=1
NRSi (3)
N: Number of papers in a specific research unit
Interpretation
Analogous to MNCS:
(M)NRS ≈ 1: average reader impact of paper
(M)NRS < 1: below average reader impact of paper
(M)NRS > 1: above average reader impact of paper
Mendeley reader impact Robin Haunschild et al. 13
14. Method
Reader-side Normalization
Average number of readers per paper (ρ) in a scientific field
(here: Mendeley discipline), document type, and publication
year:
ρd =
1
Nd
Nd
i=1
Rid (4)
Nd : Number of papers in a Mendeley discipline, document type, and
publication year
Rid : Number of reader counts of paper i in Mendeley discipline d
βid =
Rid
ρd
(5)
βid : Normalized Reader Score for paper i in Mendeley discipline d
Mendeley reader impact Robin Haunschild et al. 14
15. Method
Reader-side Normalization (cont’d)
Sum over all Mendeley disciplines yields a paper-based reader
impact value:
DNRSi =
D
d=1
βid (6)
D: Number of Mendeley disciplines where paper i has readers.
DNRSi : Discipline Normalized Reader Score of paper i
Average over a set of papers of a specific unit:
MDNRS =
1
N
N
i=1
DNRSi (7)
N: Number of papers in a specific research unit
Mendeley reader impact Robin Haunschild et al. 15
16. Spearman correlation coefficients for journals
MDNRS vs. MNRS for different OECD categories
OECD category rs No. of journals
Natural sciences 0.75 3337
Engineering and technology 0.81 1556
Medical and health sciences 0.82 2855
Agricultural sciences 0.89 385
Social sciences 0.83 1920
Humanities 0.42 563
Mendeley reader impact Robin Haunschild et al. 16
17. Additional Information
More details
DOI: 10.1016/j.joi.2016.04.015
Submission history
22 February, 2016: Upload of Manuscript (version 1) to
Figshare and submission of revised version to JoI.
07 March, 2016: Submission of abstract for this contribution
14 March/29 March, 2016: Submission deadline for STI
contributions
22 April, 2016: Manuscript accepted by JoI and upload of
final manuscript version to Figshare.
30 May, 2016: Formal acceptance of this contribution to this
conference.
DOI: 10.1016/j.joi.2016.04.015, published in the August
2016 issue of JoI.
Mendeley reader impact Robin Haunschild et al. 17
18. Summary and Conclusions
Answering the Research Questions
Yes, normalization is important for Mendeley reader counts.
Raw reader counts should not be used for impact
assessment.
Paper-side and reader-side normalizations are possible.
The paper-side normalization is the analogue of the
cited-side normalization, and the reader-side normalization
is the analogue of the citing-side normalization.
The reader-side and paper-side normalization methods
provide slightly different rankings, e.g. for journals.
Mendeley reader impact Robin Haunschild et al. 18
19. Summary and Conclusions
Normalization of Mendeley reader counts
Two different methods for normalization of Mendeley reader
counts were presented.
Both methods correlate larger than expected for most
journals.
Outlook
Normalization with respect to Mendeley disciplines has
been done.
Is it useful to normalize with respect to:
academic status groups or
country affiliations
of Mendeley readers?
Mendeley reader impact Robin Haunschild et al. 19
20. 53 23 1653 23 16
Mendeley reader impact Robin Haunschild et al. 20