Presentation to accompany my report for my oral examination. Details background of fluorescence upconversion techniques, development of measurement systems for release of a metal cation and minimization of diffusion distribution in solutions.
Eu-doped strontium iodide single crystal growth has reached maturity and prototype SrI2(Eu)-based gamma ray spectrometers provide detection performance advantages over standard detectors. SrI2(Eu) offers a high, proportional light yield of >80,000 photons/MeV. Energy resolution of <3% at 662 keV with 1.5” x 1.5” SrI2(Eu) crystals is routinely achieved, by employing either a small taper at the top of the crystal or a digital readout technique. These methods overcome light-trapping, in which scintillation light is re-absorbed and re-emitted in Eu2+-doped crystals. Its excellent energy resolution, lack of intrinsic radioactivity or toxicity, and commercial availability make SrI2(Eu) the ideal scintillator for use in handheld radioisotope identification devices. A 6-lb SrI2(Eu) radioisotope identifier is described.
Optical Control of Selectivity of High Rate CO2 Photoreduction Via Interband-...Pawan Kumar
Photonic crystals consisting of TiO2 nanotube arrays (PMTiNTs) with periodically modulated diameters were fabricated using a precise charge-controlled pulsed anodization technique. The PMTiNTs were decorated with gold nanoparticles (Au NPs) to form plasmonic photonic crystal photocatalysts (Au-PMTiNTs). A systematic study of CO2 photoreduction performance on as-prepared samples was conducted using different wavelengths and illumination sequences. A remarkable selectivity of the mechanism of CO2 photoreduction could be engineered by merely varying the spectral composition of the illumination sequence. Under AM1.5 G simulated sunlight (pathway#1), the Au-PMTiNTs produced methane (302 µmol h-1) from CO2 with high selectivity (89.3%). When also illuminated by a UV-poor white lamp (pathway#2), the Au-PMTiNTs produced formaldehyde (420 µmol h-1) and carbon monoxide (323 µmol h-1) with almost no methane evolved. We confirmed the photoreduction results by 13C isotope labeling experiments using GC-MS. These results point to optical control of the selectivity of high-rate CO2 photoreduction through selection of one of two different mechanistic pathways. Pathway#1 implicates electron-hole pairs generated through interband transitions in TiO2 and Au as the primary active species responsible for reducing CO2 to methane. Pathway#2 involves excitation of both TiO2 and surface plasmons in Au. Hot electrons produced by plasmon damping and photogenerated holes in TiO2 proceed to reduce CO2 to HCHO and CO through a plasmonic Z-scheme.
Calculation of isotopic dipole moments with spectroscopic accuracyAntônio Arapiraca
Trabalho apresentado no XVII Symposium on High Resolution Molecular Spectroscopy (HighRus-2012), 2012, Zelenogorsk-Russia. Anals of XVII Symposium on High Resolution Molecular Spectroscopy (HighRus-2012), 2012.
Eu-doped strontium iodide single crystal growth has reached maturity and prototype SrI2(Eu)-based gamma ray spectrometers provide detection performance advantages over standard detectors. SrI2(Eu) offers a high, proportional light yield of >80,000 photons/MeV. Energy resolution of <3% at 662 keV with 1.5” x 1.5” SrI2(Eu) crystals is routinely achieved, by employing either a small taper at the top of the crystal or a digital readout technique. These methods overcome light-trapping, in which scintillation light is re-absorbed and re-emitted in Eu2+-doped crystals. Its excellent energy resolution, lack of intrinsic radioactivity or toxicity, and commercial availability make SrI2(Eu) the ideal scintillator for use in handheld radioisotope identification devices. A 6-lb SrI2(Eu) radioisotope identifier is described.
Optical Control of Selectivity of High Rate CO2 Photoreduction Via Interband-...Pawan Kumar
Photonic crystals consisting of TiO2 nanotube arrays (PMTiNTs) with periodically modulated diameters were fabricated using a precise charge-controlled pulsed anodization technique. The PMTiNTs were decorated with gold nanoparticles (Au NPs) to form plasmonic photonic crystal photocatalysts (Au-PMTiNTs). A systematic study of CO2 photoreduction performance on as-prepared samples was conducted using different wavelengths and illumination sequences. A remarkable selectivity of the mechanism of CO2 photoreduction could be engineered by merely varying the spectral composition of the illumination sequence. Under AM1.5 G simulated sunlight (pathway#1), the Au-PMTiNTs produced methane (302 µmol h-1) from CO2 with high selectivity (89.3%). When also illuminated by a UV-poor white lamp (pathway#2), the Au-PMTiNTs produced formaldehyde (420 µmol h-1) and carbon monoxide (323 µmol h-1) with almost no methane evolved. We confirmed the photoreduction results by 13C isotope labeling experiments using GC-MS. These results point to optical control of the selectivity of high-rate CO2 photoreduction through selection of one of two different mechanistic pathways. Pathway#1 implicates electron-hole pairs generated through interband transitions in TiO2 and Au as the primary active species responsible for reducing CO2 to methane. Pathway#2 involves excitation of both TiO2 and surface plasmons in Au. Hot electrons produced by plasmon damping and photogenerated holes in TiO2 proceed to reduce CO2 to HCHO and CO through a plasmonic Z-scheme.
Calculation of isotopic dipole moments with spectroscopic accuracyAntônio Arapiraca
Trabalho apresentado no XVII Symposium on High Resolution Molecular Spectroscopy (HighRus-2012), 2012, Zelenogorsk-Russia. Anals of XVII Symposium on High Resolution Molecular Spectroscopy (HighRus-2012), 2012.
Synthesis, Electrical and Optical Properties of Nickel Sulphate Hexa Hydrate ...IJERA Editor
L-Arginine doped Nickel SulphateHexa Hydrate (NSH) single crystalswere grown by slow evaporation
techniquefor different molar concentrations, viz., (0.2 to 1 mole% in steps of 0.2).The grown crystals were
subjected to various studies.XRD data were collected from powder samples of the crystals.ACelectrical
measurementswerecarriedoutatvarioustemperaturesrangingfrom40-750C. Resultsindicate anincrease
oftheelectricalparameterswiththeincreaseoftemperature.The dielectric value suggests that the L-Arginine doped
NSH single crystal is good for microelectronic application. The UV-Vis-NIR spectral studies were performed to
analyze the optical absorption of the grown crystals in the range 200 – 1100nm. Results obtained were
presented.
ICL2017 Counting the photons - persistent phosphorsPhilippe Smet
Talk "Squeezing the energy out of the traps" presented at the 18th International Conference on Luminescence (ICL), August 31 2017. Describes a validated method to estimate the number of traps in storage phosphors, by embedding the phosphor in a polymer layer and counting the emitted photons during the afterglow decay. Work performed at LumiLab (Ghent University) and Concordia University.
ML-3 - Persistent Phosphors under PressurePhilippe Smet
Slides from plenary talk at the Third Conference on Mechanoluminescence and Novel structural health diagnosis, Hong Kong, December 15-17 2017. Covers absolute trapping capacity of persistent phosphors, the number and nature of energy traps and ML in selected compounds (BaSi2O2N2:Eu and CaZnOS:Mn).
Defects in energy storage phosphors: friends or enemies? (PRE19 workshop)Philippe Smet
Plenary talk presented at the PRE19 workshop (Photoluminescence in Rare Earths: Photonic Materials and Devices) in Nice, France, on September 4. Dealing with persistent luminescence, afterglow, mechanoluminescence, traps, defects and thermoluminescence. Overview of the activities of the LumiLab research in the past 10 years.
Images and data in the presentation are subject to copyright. Please contact redhwanm(at)mcmaster(dot)ca for permission if you want to use any of its contents.
EMRS 2018 Replacing rare earth ions in LEDs (?)Philippe Smet
Two decades after the development of the blue light-emitting diode (LED), LEDs have quickly established themselves as the lighting technology of the future. The high efficiency, spectral tunability, lack of toxic compounds and a small footprint makes them far more attractive than other lighting technologies. The high efficiency, now well exceeding 100 lum/W in commercial products, has still the margin to double, promising a strong reduction in electricity consumption.
White LEDs are commonly based on a blue LED, combined with luminescent materials, or phosphors, which convert part of the blue light to longer wavelengths, the mixture providing white light. Besides the workhorse Y3Al5O12:Ce (YAG:Ce, yielding yellow emission), europium doped phosphors are used to provide e.g. the red emission required for warm-white LEDs.
Six main requirements for LED phosphors are discussed and used to explain the discrepancy between the high number of compositions described in literature and the handful of actually used compounds, being almost uniquely based on rare earth ions as luminescent center [1]. Alternative materials avoiding the use of rare earth ions are discussed, including Mn4+ doped fluorides phosphors (e.g. K2SiF6:Mn4+ [2]) and quantum dots. Finally, the impact of phosphor geometries on phosphor use, including remote phosphor applications, are discussed.
[1] Smet PF and Joos JJ, Nat. Mater. 16 (2017) 500.
[2] Sijbom H et al, Opt. Mater. Exp. 7 (2017) 3332.
Energy storage phosphors @ Phosphor Global Summit 2019Philippe Smet
Presentation on opportunities and limitations of energy storage phosphors, which can be used for glow-in-the-dark roads or safety illumination. Loss mechanisms in phosphors. Presented at the Phosphor Global Summit and Quantum Dot Forum 2019 in San Diego, La Jolla, California. March 19-21.
Inexpensive, commonly used NaI:TI scintillators have 50% of the market share, but due to mediocre light output of 44,000 photons/MeV and 6.5% energy resolution (at 662 keV) their application is limited. Proposed technology promises to improve NaI:TI-based scintillators' properties by providing unparalleled output while maintaining low costs. To do so a combinatorial approach was used for the discovery of scintillation materials yielding the highest luminescence and lowest energy resolution. In testing, the engineered crystals of NaI:Tl attained a light output of 52,000 photons/MeV and energy resolution of 4.9% (at 662 keV). Crossing below the 5.0% energy resolution mark provides a specific direction for the development of even better future samples.
Talk was presented by I.V.Khodyuk and SCINT15
Preparation of Au-Ag composite Nanoparticles by Pulsed Laser Ablation in Wate...IOSRJAC
In this work, a colloidal suspension aqueous solution of Au/Ag composite nanoparticles by pulsed laser ablation method was obtained. Q-switched Nd:YAG, λ=1064nm, 532nm10 ns pulse duration and E=100- 900 mJ and by using pure Ag and Au metal plates immersed in pure water. The optical extinction spectra have been obtained in the Plasmon resonance region. The results are supported by X-ray data and transmission electron microscopy. UV-VIS absorption spectra of produced solution show a sharp peak around 400 nm, 525nm indicating the produced Ag and Au nanoparticles respectively with a narrow size ranging from (5 to 45) nm for Ag NPs, (8-55)nm for Au NPs and (10-170)nm for Au/Ag composite NPs with almost spherical shape Xray data indicate the fcc (face-centered cubic) structure.This work presents the effect of number of pulses on the properties of the prepared Au, Ag and Au-Ag alloy NPs, also included a study of the biomedical effects of Au, Ag, Au-Ag alloy NPs on the activity of Alkaline Phosphatase enzyme in human blood.
Synthesis, Electrical and Optical Properties of Nickel Sulphate Hexa Hydrate ...IJERA Editor
L-Arginine doped Nickel SulphateHexa Hydrate (NSH) single crystalswere grown by slow evaporation
techniquefor different molar concentrations, viz., (0.2 to 1 mole% in steps of 0.2).The grown crystals were
subjected to various studies.XRD data were collected from powder samples of the crystals.ACelectrical
measurementswerecarriedoutatvarioustemperaturesrangingfrom40-750C. Resultsindicate anincrease
oftheelectricalparameterswiththeincreaseoftemperature.The dielectric value suggests that the L-Arginine doped
NSH single crystal is good for microelectronic application. The UV-Vis-NIR spectral studies were performed to
analyze the optical absorption of the grown crystals in the range 200 – 1100nm. Results obtained were
presented.
ICL2017 Counting the photons - persistent phosphorsPhilippe Smet
Talk "Squeezing the energy out of the traps" presented at the 18th International Conference on Luminescence (ICL), August 31 2017. Describes a validated method to estimate the number of traps in storage phosphors, by embedding the phosphor in a polymer layer and counting the emitted photons during the afterglow decay. Work performed at LumiLab (Ghent University) and Concordia University.
ML-3 - Persistent Phosphors under PressurePhilippe Smet
Slides from plenary talk at the Third Conference on Mechanoluminescence and Novel structural health diagnosis, Hong Kong, December 15-17 2017. Covers absolute trapping capacity of persistent phosphors, the number and nature of energy traps and ML in selected compounds (BaSi2O2N2:Eu and CaZnOS:Mn).
Defects in energy storage phosphors: friends or enemies? (PRE19 workshop)Philippe Smet
Plenary talk presented at the PRE19 workshop (Photoluminescence in Rare Earths: Photonic Materials and Devices) in Nice, France, on September 4. Dealing with persistent luminescence, afterglow, mechanoluminescence, traps, defects and thermoluminescence. Overview of the activities of the LumiLab research in the past 10 years.
Images and data in the presentation are subject to copyright. Please contact redhwanm(at)mcmaster(dot)ca for permission if you want to use any of its contents.
EMRS 2018 Replacing rare earth ions in LEDs (?)Philippe Smet
Two decades after the development of the blue light-emitting diode (LED), LEDs have quickly established themselves as the lighting technology of the future. The high efficiency, spectral tunability, lack of toxic compounds and a small footprint makes them far more attractive than other lighting technologies. The high efficiency, now well exceeding 100 lum/W in commercial products, has still the margin to double, promising a strong reduction in electricity consumption.
White LEDs are commonly based on a blue LED, combined with luminescent materials, or phosphors, which convert part of the blue light to longer wavelengths, the mixture providing white light. Besides the workhorse Y3Al5O12:Ce (YAG:Ce, yielding yellow emission), europium doped phosphors are used to provide e.g. the red emission required for warm-white LEDs.
Six main requirements for LED phosphors are discussed and used to explain the discrepancy between the high number of compositions described in literature and the handful of actually used compounds, being almost uniquely based on rare earth ions as luminescent center [1]. Alternative materials avoiding the use of rare earth ions are discussed, including Mn4+ doped fluorides phosphors (e.g. K2SiF6:Mn4+ [2]) and quantum dots. Finally, the impact of phosphor geometries on phosphor use, including remote phosphor applications, are discussed.
[1] Smet PF and Joos JJ, Nat. Mater. 16 (2017) 500.
[2] Sijbom H et al, Opt. Mater. Exp. 7 (2017) 3332.
Energy storage phosphors @ Phosphor Global Summit 2019Philippe Smet
Presentation on opportunities and limitations of energy storage phosphors, which can be used for glow-in-the-dark roads or safety illumination. Loss mechanisms in phosphors. Presented at the Phosphor Global Summit and Quantum Dot Forum 2019 in San Diego, La Jolla, California. March 19-21.
Inexpensive, commonly used NaI:TI scintillators have 50% of the market share, but due to mediocre light output of 44,000 photons/MeV and 6.5% energy resolution (at 662 keV) their application is limited. Proposed technology promises to improve NaI:TI-based scintillators' properties by providing unparalleled output while maintaining low costs. To do so a combinatorial approach was used for the discovery of scintillation materials yielding the highest luminescence and lowest energy resolution. In testing, the engineered crystals of NaI:Tl attained a light output of 52,000 photons/MeV and energy resolution of 4.9% (at 662 keV). Crossing below the 5.0% energy resolution mark provides a specific direction for the development of even better future samples.
Talk was presented by I.V.Khodyuk and SCINT15
Preparation of Au-Ag composite Nanoparticles by Pulsed Laser Ablation in Wate...IOSRJAC
In this work, a colloidal suspension aqueous solution of Au/Ag composite nanoparticles by pulsed laser ablation method was obtained. Q-switched Nd:YAG, λ=1064nm, 532nm10 ns pulse duration and E=100- 900 mJ and by using pure Ag and Au metal plates immersed in pure water. The optical extinction spectra have been obtained in the Plasmon resonance region. The results are supported by X-ray data and transmission electron microscopy. UV-VIS absorption spectra of produced solution show a sharp peak around 400 nm, 525nm indicating the produced Ag and Au nanoparticles respectively with a narrow size ranging from (5 to 45) nm for Ag NPs, (8-55)nm for Au NPs and (10-170)nm for Au/Ag composite NPs with almost spherical shape Xray data indicate the fcc (face-centered cubic) structure.This work presents the effect of number of pulses on the properties of the prepared Au, Ag and Au-Ag alloy NPs, also included a study of the biomedical effects of Au, Ag, Au-Ag alloy NPs on the activity of Alkaline Phosphatase enzyme in human blood.
Synthesis of 2-aminocyclopent-1-ene-1-carbodithioic acid (ACA) Capped Silver ...IJERA Editor
The present work deals with the formation, morphology and photophysical activity of the 2-aminocyclopent-1-ene-1-carbodithioic acid (ACA) Capped Silver nanoparticles via chemical reduction method. The method utilizes a simple chemical reaction of silver idodide and sodium borohydride. The advantages of this method are ease of preparation, convenience in use and especially, that the obtained silver nano particles are uniform in their shapes and sizes. This is important for fluorescence & bio-evolution measurements. Furthermore, UV-visible (UV-vis) spectroscopy is employed to monitor the formation process of the nano particles and to determine the optimum conditions for the preparation of stable and highly fluorescence-active silver colloids. Specifically, we observed changes in the shapes of the silver nano particles during the formation. This may be helpful in understanding the growth of the nano particles and creates a new dimension in controlling the shapes of the nano particles.SEM, TEM and XRD studies are carried out. The suitability of ACA capped Ag-NPs as Biomarkers is also Tested by Fluorescence study.
Synthesis & Characterization of Fluorescent Silver Nanoparticles stabilized b...IJERA Editor
Synthesis of silver nanoparticles (Ag-NPs) was achieved by a simple green procedure using Tinospora Cordifolia leaf extract as stabilizer/reducing agents. Ag-NPs in the size range of 2–19 nm is obtained by the treatment of aqueous silver ions with leaf extracts of Tinospora Cordifolia. This eco-friendly approach is simple, amenable for large scale commercial production and technical applications. Further, photoluminiscence studies of these Ag-NPs were recorded & suggested that the present particles were suitable for fluorescence emitting probes. These red emitting Ag-NPs exhibited distinct fluorescence properties (both emission and stokeshift).
Noble Metal Free, Visible Light Driven Photocatalysis Using TiO2 Nanotube Arr...Pawan Kumar
Bulk g-C3N4 is an earth-abundant, easily synthesizable, and exceptionally stable photocatalyst with an electronic bandgap of 2.7 eV. Herein, the concepts of P-doping and size quantization are combined to synthesize highly fluorescent P-doped carbon nitride quantum dots (CNPQDs) with a bandgap of 2.1 eV. CNPQDs are hosted on anatase-phase and rutile-phase TiO2 nanotube array scaffolds, and examined as photoanodes for sunlight-driven water-splitting and as photocatalysts for surface catalytic reactions. Square-shaped rutile phase TiO2 nanotube arrays (STNAs) decorated with CNPQDs (CNPQD-STNA) generate 2.54 mA cm−2 photocurrent under AM1.5 G simulated sunlight. A champion hydrogen evolution rate of 22 µmol h−1 corresponds to a Faradaic efficiency of 93.2%. In conjunction with Ag nanoparticles (NPs), the CNPQD-STNA hybrid is also found to be an excellent plexcitonic photocatalyst for the visible light-driven transformation of 4-nitrobenzenethiol (4-NBT) to dimercaptoazobenzene (DMAB), producing reaction completion at a laser power of 1 mW (532 nm) while Ag NP/TNA and Ag NP/STNA photocatalysts cannot complete this transformation even at 10 mW laser power. The results point the way forward for photochemically robust, noble metal free, visible light harvesting photoacatalysts based on nanostructured heterojunctions of graphenic frameworks with TiO2.
Analysis Of Carbon Nanotubes And Quantum Dots In A Photovoltaic Device Slide ...M. Faisal Halim
Francis' presentation to Louis Stokes Association for Minority Participation. Since I co-authored this work I think I have the right to a copy. I was the graduate student Francis was working with.
Structural and FTIR Studies of Pure and Zinc Doped SNO2NanoParticlesmsejjournal
Pure and zinc-doped tin oxide nanoparticles were synthesized by the chemical co-precipitation method.The structural studies were carried out by X-Ray Diffraction pattern. XRD pattern reveals the tetragonal
rutile structure of tin oxide nanoparticles. Fourier Transform Infrared Spectroscopy studies were used to identify the chemical information of pure and zinc-doped tin oxide nanoparticles. The crystallite size of pure tin oxide nanoparticles is 9 nm obtained from the X-ray diffraction pattern. The Zn ions are incorporated into the tin ions. It is suitable candidate for gas sensor applications.
STRUCTURAL AND FTIR STUDIES OF PURE AND ZINC DOPED SNO2NANOPARTICLESmsejjournal
Pure and zinc-doped tin oxide nanoparticles were synthesized by the chemical co-precipitation method.
The structural studies were carried out by X-Ray Diffraction pattern. XRD pattern reveals the tetragonal
rutile structure of tin oxide nanoparticles. Fourier Transform Infrared Spectroscopy studies were used to
identify the chemical information of pure and zinc-doped tin oxide nanoparticles. The crystallite size of
pure tin oxide nanoparticles is 9 nm obtained from the X-ray diffraction pattern. The Zn ions are
incorporated into the tin ions. It is suitable candidate for gas sensor applications.
Advances in Materials Science and Engineering: An International Journal (MSEJ)msejjournal
Pure and zinc-doped tin oxide nanoparticles were synthesized by the chemical co-precipitation method.
The structural studies were carried out by X-Ray Diffraction pattern. XRD pattern reveals the tetragonal
rutile structure of tin oxide nanoparticles. Fourier Transform Infrared Spectroscopy studies were used to
identify the chemical information of pure and zinc-doped tin oxide nanoparticles. The crystallite size of
pure tin oxide nanoparticles is 9 nm obtained from the X-ray diffraction pattern. The Zn ions are
incorporated into the tin ions. It is suitable candidate for gas sensor applications.
Ultrafast response of metal-semiconductor hybrid.pptxSabinaGurung12
This thesis presents an extensive study of self-organizatized synthesis of hybrid
nanostructure and their characterization using a combination of spectroscopic and microscopic
techniques, supported by theoretical modelling. Apart from the various potential applications of the
hybrid nanostructures reported, this thesis also provides an insight on the synergistic interaction
between Ag NP and CdTe QD. The future interest of this work involves utilization of these hybrid
nanostructure colloid for various applications like in optoelectronics and solar cells by transforming
the colloidal sample into thin films.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Mammalian Pineal Body Structure and Also Functions
Metal ion burst: Examining metal ion diffusion using ultrafast fluorescence spectroscopy in reverse micelles
1. METAL ION BURST:
EXAMINING METAL ION
DIFFUSION USING
ULTRAFAST FLUORESCENCE
SPECTROSCOPY IN REVERSE
MICELLES
CHELSEY CROSSE
ORALS PRESENTATION
APRIL 29, 2014
2. to develop methods
to measure the
impact of metal ions
on a wide range of
timescales.
1
RESEARCH FOCUS:
Example: Proposed work with Dr. Crans
observing interaction of Cu2+ and β-amyloid. All
current work is directed in this capacity.
Illustration courtesy of Alzheimer’s Disease Research, a program of the American Health Assistant Foundation
3. A STEP BACK:
TIME RESOLVED SPECTROSCOPY
2
Initialization
t0
t
Changes Equilibrium
…
0
1
2
3
0 5 10 15 20
Absorbance
(~620nm)
Time
Example Kinetic Trace at Single
Wavelength
0
0.2
0.4
0.6
0.8
1
400 500 600 700
Absorbance
(t~8)
Wavelength (nm)
Example Spectrum at Single Time
4. • Rate of observation
• Rate of initialization
3
LIMITS OF TIME RESOLVED
SPECTROSCOPY
t0
1s
Pouring
Human Eye
Photolysis Release
Optical Gating
Highest Possible Time Resolution
1ps
(approximate temporal orders)
Micro Channel Plate (electronic limit)
…
5. pH jump
• Photoacids excited by
femtosecond pulses
• Releases H+
• Regenerates
• Well characterized release
dynamics
Caged-metal organic
complexes
• Cages photolysed by
femtosecond pulses
• Releases metal ion
• Does not regenerate
• Release dynamics not
characterized on fs scale to
our knowledge
4
PHOTOLYSIS RELEASE
TECHNIQUES
HA hn
¾ ®¾ A-
+H+ time
¾ ®¾ HA
AMB hn
¾ ®¾ A+M +B
M2+ M2+
hn
H+
hn
H+
Donten, M. L., Hamm, P., & VandeVondele, J. (2011). A Consistent Picture of the Proton Release Mechanism of oNBA in
Water by Ultrafast Spectroscopy and Ab Initio Molecular Dynamics. The Journal of Physical Chemistry B , 115, 1075-1083.
First Step
7. 6
Requirements:
• Ultrafast probe technique
• Well characterized probe
• Limited diffusion distance
(1) hnM2+
M2+
Probe
M2+
M2+
METAL ION DETECTION BY
FLUORESCENT PROBE
8. • Energy of electronic
states depends on:
• Molecule geometry
• Interactions with
environment
• Changes can be
observed as:
• Changes in fluorescence
intensity
• Shifts in fluorescence
spectra
7
TIME RESOLVED FLUORESCENCE
ON MOLECULAR TIMESCALE
System Coordinate
t
t
FluorescenceIntensity
9. Detection of fluorescence
signal using non-linear
optical gating.
8
FLUORESCENCE
UPCONVERSION
wgated =wfl +wgate
Non-Linear Crystal
Gated
Fluorescence Signal (ωgated)
10. Portion of fluorescence
signal sampled can be
changed by:
• Changing gate arrival
time temporal region
• Changing crystal angle
spectral region
9
FLUORESCENCE UPCONVERSION:
TEMPORAL RESOLUTION
Non-Linear Crystal
Gated
Fluorescence SignalIntensity
Crystal Out
Crystal In
11. • Each frequency requires
realignment of crystal
angle
• Kinetic traces can be
used to reconstruct
temporal fluorescence
spectra
10
FLUORESCENCE UPCONVERSION:
EXAMPLE DATA
Zhang, X. -X.; Würth, C.; Zhao, L.; Resch-Genger, U.; Ernsting, N. P.; Sajadi, M. Femtosecond broadband fluorescence
upconversion spectroscopy: Improved setup and protometric correction. Review of Scientific Instruments 2011, 82,
063108.
t
FluorescenceIntensity
12. 11
FLUORESCENCE UPCONVERSION:
TEMPORAL RESOLUTION
BBO
Sample
Nd:Vanadate
Pump Laser
Mode-locked
Ti:Sapphire Laser
Optical
Delay Stage
BBO
Elliptical
Mirror
Monochromator
PMT
LabVIEW VI
Used successfully by
Levinger group to
examine water
environments
I have rebuilt most of this
system, repairs &
replacements have
prevented completion
Gate
Excitation
Gated
Signal
13. I have experience aligning
necessary optical systems:
• Assembled &
successfully mode-locked
Ti:Sapphire oscillator
system
• Used & adjusted FROG
system
• Designed & built other
non-linear system
12
FLUORESCENCE UPCONVERSION:
PERSONAL EXPERIENCE
17. Initial characterization:
• Steady State
Fluorescence
• Fluorescence Lifetime
(TCSPC)
Have been able to observe
quenching by Cu2+.
16
COUMARIN 343 (C343)
Previously used successfully by Levinger group in
fluorescence upconversion studies.
20. Used to determine complex
stoichiometry.
1. Measure absorbance of
mixture solution at
different mole fractions
2. Subtract the absorbance
of the pure compounds
in solution at the
concentration measured
19
JOB PLOT
Harris Quantitative Chemical Analysis Fig. 19-8
A(PX, x)= A(solution, x)- A(P,[P])- A(X,[X])
21. C343: BEER’S LAW
20
In cooperation with Angela Warner.
A =ebc
y = 0.253x
R² = 0.9636
0
0.1
0.2
0.3
0.4
0.5
0.6
0 0.5 1 1.5 2 2.5
Absorbance
Concentration of C343 (10-5M)
Beer's Law Plot C343 at 409 nm
y = 0.3417x
R² = 0.9997
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0 0.5 1 1.5 2 2.5
PeakAbsorbance
Concentration (10-5M)
Beer's Law Plot of Tryptophan at 212 nm
C343:
R² = 0.96364
23. 22
Requirements:
Ultrafast probe technique
Well characterized probe
• Limited diffusion distance
(1) hnM2+
(3) Interaction
M2+
Probe
(2) DiffusionM2+
M2+
METAL ION DETECTION BY
FLUORESCENT PROBE
24. • Open solution:
• Sensor-ion interaction
determined by Brownian
diffusion
• Large probability distribution
• Limited measurement
resolution
• Confined environment:
• Sensor-ion interaction
probability enhanced by
proximity
• Increased reaction times have
been shown previously
• Choose reverse micelles
(RMs)
Levinger group has
expertise in characterization
& preparation.
23
CHARACTERIZATION OF
METAL ION RELEASE
M2+
Probe
M2+
Probe
25. 24
Ultrafast probe technique
• Fluorescence upconversion
• Currently being reassembled
Well characterized probe
• Analytical characterization techniques have been validated
• Still in the process of testing candidates
Limited diffusion distance
• Confinement in reverse micelles
• Relying on expertise of Levinger group
METAL ION DETECTION BY
FLUORESCENT PROBE
26. Immediate:
• Identify fluorophore
• Build upconversion
experiment
• Characterize full
fluorophore system using
fluorescence
upconversion
Future:
• Extend upconversion to
metal ion burst
• Measure metal ion
dynamics in interesting
systems
25
GOALS
M
Probe
27. Dr. Nancy Levinger
Dr. Debbie Crans
Angela Warner
Ben Wiebenga-Sanford
All the Levinger & Crans
group folks
Barisas (use of the IBH)
CIF
Jenee Cyran & Laura Tvedke
26
ACKNOWLEDGEMENTS
28. 27
ANATOMY OF A
REVERSE MICELLE
• Organic solvent
• Aqueous suspension
• Surfactant molecules
29. 28
REVERSE MICELLE: TERNARY
PHASE DIAGRAM
• Size
• Described in number of water
molecules (w0) in each RM
• Easily adjusted by changing
proportions of solution
• Well documented
characteristics
• Rate enhancements
observed in confined
reaction systems
Magalhaes – Phase diagram of a lyotropic mixtrue sodium bis (2 ethylexyl) sulfosuccinate-codecanol-water:…(1998)
Confinement papers from Levinger (78-80 PRF)
30. • Photolytic release of
metal ions into solution
• Complex dissociation has
been observed to be
faster than 10 s
• Variety of compounds
with different optical
absorbances
• Diffusion time of metal
ion has yet to be
characterized
29
CAGED METAL
ORGANIC COMPLEXES
H. M. D. Bandara, D. P. Kennedy, E. Akin, C. D. Incarvito, and S. C. Burdette, "Photoinduced Release of Zn2+ with ZinCleav-1: a Nitrobenzyl-Based Caged Complex",
Inorganic Chemistry 48 (17), 8445-8455 (2009).
H. M. D. Bandara, T. P. Walsh, and S. C. Burdette, "A Second-Generation Photocage for Zn2+ Inspired by TPEN: Characterization and Insight into the Uncaging Quantum Yields
of ZinCleav Chelators", Chemistry-a European Journal 17 (14), 3932-3941 (2011).
K. L. Ciesienski and K. J. Franz, "Keys for Unlocking Photolabile Metal-Containing Cages", Angewandte Chemie-International Edition 50 (4), 814-824 (2011).
K. L. Ciesienski, K. L. Haas, and K. J. Franz, "Development of next-generation photolabile copper cages with improved copper binding properties", Dalton Transactions 39 (40), 9538-9546 (2010).
31. Because we are observing
quenching effects, we will be
working in lower intensity
regions.
It may be necessary to
increase instrument
sensitivity.
OPAGE would gate signal in
an OPA crystal to account
for this
It has been tried before, but
have been some challenges
30
OPAGE
37. Point at which two chemical
species have the same molar
absorptivity, or are linearly
related.
Can be used to tune
absorbance for total reaction
because it remains constant
over the entire reaction.
36
ISOSBESTIC POINT
Wikipedia. http://en.wikipedia.org/wiki/File:Bromocresol_green_spectrum.png Created 03/02/2006, Accessed 04/17/14
38. 37
PH JUMP EXAMPLE
Donten, M. L., Hamm, P., & VandeVondele, J. (2011). A Consistent Picture of the Proton Release Mechanism of oNBA in
Water by Ultrafast Spectroscopy and Ab Initio Molecular Dynamics. The Journal of Physical Chemistry B , 115, 1075-1083.