Uploaded bySyed Lokman
Local Alignment
This document appears to be notes from a bioinformatics lab course. It discusses lab assignment #6 on performing local sequence alignment. The instructor's name is Syed Mohammad Lokman and it is for the course BINF 2000: Introduction to Bioinformatics at Asian University for Women. The document provides information on local alignment methodology and includes an exercise on performing a local sequence alignment.
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Local Alignment
- 1. Lab#6: Sequence Alignment(Local) Asian University For Women BINF 2000: Introduction to Bioinformatics (Lab - Fall 2022) Syed Mohammad Lokman Instructor Asian University for Women
- 2. 2 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 3. 3 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 4. 4 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 5. 5 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 6. 6 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 7. 7 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) Diagonal Horizontal Vertical Match or Mismatch Gap
- 8. 8 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) Match or Mismatch Gap Gap
- 9. 9 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) 1 2 3 4 5 6 7 8 9 10
- 10. 10 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) Lab#5 mini-assessment: Global Sequence Alignment S1 = A T C A G A G T C S2 = T T C A G T C Match= 2; MisMatch= 0; Gap Penalty= - 2
- 11. 11 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) Lab#5 mini-assessment: Global Sequence Alignment
- 12. 12 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) Lab#5 mini-assessment: Global Sequence Alignment
- 13. 13 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) Lab#5 mini-assessment: Global Sequence Alignment ATCAGAGTC | | | | | | : 8 TTCAG - - TC ATCAGAGTC | | | | | | : 8 TTC - - AGTC ATCAGAGTC : 8 | | | | | | TTCA - - GTC
- 14. 14 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 15. 15 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 16. 16 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 17. 17 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 18. 18 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 19. 19 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 20. 20 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 21. 21 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 22. 22 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 23. 23 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 24. 24 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
- 25. 25 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) Lab#6 Exercise: Local Sequence Alignment
- 26. 26 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) Lab#6 Exercise: Local Sequence Alignment
- 27. 27 BINF 2000: Introductionto Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd) Lab#6 Exercise: Local Sequence Alignment