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Literature Searching
for Systematic Reviews
          January 2009



       Diane Lorenzetti MLS
  Centre for Health & Policy Studies
    Institute of Health Economics
        dllorenz@ucalgary.ca
A systematic review is..

       “a review of the evidence on a clearly formulated
      question that uses systematic and explicit methods
        to identify, select and critically appraise relevant
      primary research, and to extract and analyse data
         from the studies that are included in the review
      Statistical methods (meta-analysis) may or may not
                             be used.”
(Undertaking systematic reviews of research on effectiveness: CRD's guidance for
   those carrying out or commissioning reviews (2001)
   http://www.york.ac.uk/inst/crd/report4.htm.)
Characteristics of
               systematic literature searches

    Meticulous planning
•
    Comprehensive method for searching the literature
•
    Inclusion of a variety of sources of information
•
    Identification of all relevant studies
•
    Unbiased searching (eg: inclusion of non-english language
•
    research and both published and unpublished studies)
    Transparent and reproducible search strategy
•
Before beginning a systematic review…

Establish the need for a systematic review

Document decisions made by the team during the
question refinement and literature search process

Develop a timeline for completion of each stage of your
review
A timeline may include:
    Pre-searching and question refinement
•
    Development of inclusion/exclusion criteria
•
    Development of search strategy
•
    Literature searching (including searching of the grey
•
    literature and strategy refinement)
    Development of abstract inclusion/exclusion criteria
•
    Abstract review and selection
•
    Document retrieval
•
    Creation of data extraction form for full text article review
•
    Full text article review and selection
•
    Synthesis
•
    Preparation of the final report
•
Many of these activities may occur simultaneously……………
Pre-searching and Question Refinement

Develop a clear question

Conduct a pre-search prior to beginning your review

Be prepared to revise your question based on the results
of your pre-search
PICO


PICO is a model adopted by proponents of evidence-based
  medicine as an aid to question formulation
Developing a research question using
                      PICOS
P = Population:     the group under observation/study
I = Intervention:   the intervention, exposure or action
                    of interest
C = Comparison      an alternative action or intervention
                    against which the intervention of
                    interest will be compared
O = Outcome:        a measure of the desired effect of
                    the Intervention/Exposure
S = Study design    study designs appropriate for the
                    research question under consideration
Components of a research question
                (PICO format)
Q1:   Is a pre-recorded telephone health information service
      (Intervention) for mothers with toddlers (Population)
      more effective than printed information (Comparison) in
      increasing knowledge of accident prevention
      techniques? (Outcome)

Q2:   Is there a relationship between health care costs
      (Intervention) and patients’ (Population) use of health
      services (Outcome)?
Keywords & synonyms

Develop lists of keywords and synonyms for each
PICO component of your research question
before you begin searching for relevant literature.

Keywords are independent of any one
electronic database and will help you to be
consistent as you map your search to each
database/resource you use.
Keywords & synonyms

    Eg: Is hypnotism an effective means of reducing
               smoking in adolescents?

Concept/     Teenagers       Hypnotism      Smoking
Facet             P               I              O
Keywords/    teenager(s)     hypnotism      smoke
Synonyms     teen(s)         hypnosis       smoking
             adolescent(s)   hypnotherapy   cigarette(s)
             youth(s)        suggestion     tobacco
             high school                    snuff
             student(s)
Boolean operators: OR

Used to connect synonyms, similar terms
Broadens / expands a search
Finds records with any of your search terms
  Eg: glucosamine OR n-acetyl-d-glucosamine
Boolean operators: AND

Used to combine search concepts/components
Narrows / focuses a search
Finds records with all your search terms
 Eg: osteoarthritis AND glucosamine
Is hypnotism an effective means of reducing
        smoking in adolescents?
PICO         Teenagers     Hypnotism      Smoking
Component         P              I            O
                         AND            AND
Keywords/    teenager(s)   hypnotism      smoke
             OR            OR             OR
Synonyms
             teen(s)       hypnosis       smoking
             OR            OR             OR

             adolescent(s) hypnotherapy cigarette(s)
             OR            OR             OR

             high school   suggestion     tobacco
             student(s)                   OR

                                          snuff
Sensitivity and specificity in literature searching
Sensitivity (recall)
The proportion of relevant articles identified by a search strategy as a
  percentage of all relevant articles on a given topic. It is a measure of
  the ability of a search strategy to identify all relevant articles.

Specificity (precision)
The proportion of relevant articles identified by a search strategy as a
  percentage of all articles (relevant and irrelevant) identified by that
  search. It is a measure of the ability of a search strategy to exclude
  irrelevant articles.

Highly sensitive strategies tend to have low levels of precision and vice
versa. In a systematic review, the aim is to maximize sensitivity while also
attempting, insofar as it is possible, to maximize precision.
Study design filters
“a predefined search strategy designed to retrieve levels of
   evidence (RCTs, systematic reviews etc) or types of clinical
   queries (diagnosis, prognosis, etiology, treatment) when
   combined with the subject search terms of your choice.
   They are also referred to as hedges, Clinical Queries (USA),
   or optimal search strategies.” (BestBETS Search Strategies
  http://www.bestbets.org/links/strategies.html)

  Used to limit search results by study design

  Study design filters can increase the specificity of search
  results
Study design terms found in select filters
Qualitative research
   (e.g. “findings”, “qualitative”, “interview$”)
Diagnosis
   (e.g. “sensitivity”, “specificity”)
Prognosis
   (e.g. “follow-up studies”, “incidence”)
Intervention/Therapy
   (e.g. “randomised controlled trial.pt.”)
Causation
   (e.g. “risk”, “risk factor” and “cohort studies”)
RCT Sensitive filter for OVID MEDLINE searches
                (Cochrane Collaboration)

     (controlled clinical trial or randomized controlled trial or
1.
     meta analysis).pt.
     clinical trials as topic/
2.
     (placebo$ or random$ or trial$).ti,ab.
3.
     1 or 2 or 3
4.
     limit 4 to animals
5.
     limit 4 to (animals and humans)
6.
     5 not 6
7.
     4 not 7
8.
RCT Sensitive filter for OVID EMBASE searches
                (Cochrane Collaboration)

     cross-over procedure/ or double-blind procedure/ or
1.
     randomized controlled trial/ or single-blind procedure/
     (allocat$ or assign$ or cross over$ or crossover$ or
2.
     (double ADJ blind$) or factorial or placebo$ or random$ or
     (single ADJ blind$) or volunteer$).ti,ab.
     1 or 2
3.
     limit 3 to animals
4.
     limit 3 to (animals and humans)
5.
     4 not 5
6.
     3 not 6
7.
Bibliographic database selection
No one bibliographic database is comprehensive enough to index all
published literature on a topic. MEDLINE indexes approx 5000 of the
20,000 biomedical journals published.

Overlap between databases is common

Extent of overlap between MEDLINE and EMBASE is estimated to be
34%; ranging between 10% and 75%, depending on topic

Selection will vary with the subject. When choosing electronic
databases, consider the multidisciplinary needs of your research
question & select databases that reflect these needs
Bibliographic databases for
                 clinical research topics

    MEDLINE/PubMed


    EMBASE


    Cochrane Database of Systematic Reviews


    Cochrane CENTRAL Register of Controlled Trials


    CINAHL


    PsycINFO


    International Pharmaceutical Abstracts

Bibliographic databases for non clinical
                     research topics
    ABI Inform

        health policy, health services administration, economics of health care
    

    ERIC

        health promotion, health education
    

    Social Sciences Abstracts & Sociological Abstracts

        health policy, health promotion, patient access to and satisfaction with health care
    

    Econlit

        economics of health care
    

    Philosophers’ Index

        Ethical aspects of health care procedures and delivery
    
Database Thesauri/Subject Lists
    Search both general and specific thesaurus/subject terms
•
    as appropriate
MEDLINE examples:
    Mental health[MeSH] plus MeSH terms for specific
    mental health conditions such as schizophrenia[MeSH],
    alcoholism[MeSH] etc…. as appropriate


    Angiotensin-converting enzyme inhibitors[MeSH]
    (ACE inhibitors used to treat high blood pressure and
    heart failure) plus captopril[MeSH] (a specific ACE
    inhibiting drug)
Broadening a search

Use broader, more general search terms
Include a variety of synonyms
Apply truncation symbols to word stems to retrieve
alternate spellings, singular/plural word forms &
word variants
Drop the least important concepts from your
search – eg: outcomes
Apply fewer / no limits to your search
Truncation

Finds variations of a word stem
Eg: plan$ retrieves plan, plans, planner, planners,
and planning
Truncation should only be used with keyword or
title/abstract word searching - not with subject
heading searching
Truncation symbol varies with database -
usually * but OVID databases use $
Narrowing a search

Use more specific search terms
Decrease # of synonyms included in the search
Eliminate or limit word truncation
Add concepts to your search
Apply limits
Searching Norms for Systematic Reviews
    Search both thesaurus/subject terms and text
•
    (title/abstract) words
    Include both synonyms and truncated forms of text words
•
    in your search
    Include CAS Registry numbers and generic/brand names
•
    in drug searches
    Unless there is a compelling reason (eg: changes in
•
    policies, procedures, interventions etc…) do not limit your
    search by date or language
Pre-testing Your Search Strategy

Select one electronic database on which to craft, test and
finalize your search strategy
Be prepared to run multiple tests of your search strategy
with your research team before finalizing your approach
If you have pre-identified key studies, these studies can
act as a litmus test of the effectiveness of your search
strategy
Going beyond Electronic Databases

    Consider searching beyond electronic databases to locate
•
    relevant studies:
    a) Reference lists of key articles
    b) Hand searching of key journals
    c) Hand searching of key conference proceedings
    d) Consultation with experts
    e) Citation searching with Web of Science
    f) Grey literature
Grey literature may include…..

    Unpublished or ongoing studies


    Conference and meeting proceedings and abstracts


    Dissertations & theses


    Newsletters


    Reports of research organizations and government

    agencies
    Informal communications



            http://library.ucalgary.ca/branches/hsl/greylit
Why hand search journals?
    Key journals may not be indexed in mainstream electronic

    databases
        Examples: complementary and alternative medicine & health
    
        promotion
    Inaccurate indexing of studies in electronic databases

    Incomplete search strategies may result in studies being

    missed during database searching
    Journals indexed in databases such as MEDLINE and

    EMBASE may be indexed selectively
    Abstracts, letters or conference reports may not be indexed

    in electronic databases
Cochrane Collaboration
                 hand searching initiative

    Cochrane collaborators around the world hand search

    health care journals and conference proceedings to locate
    randomized controlled trials of healthcare interventions.

    RCTs found are entered into the Cochrane CENTRAL

    Register of Controlled Trials.

    Currently, over 2300 journals are being searched.



    The Master List of hand-searched journals can be

    viewed/searched online at
    http://apps1.jhsph.edu/cochrane/masterlist.asp
Tracking your Literature Search

    Record information on all resources searched (and when),

    search terms used, when the search was completed and
    how many records/results were found

    Track studies retrieved, ordered and received

    Consider using a bibliographic management software
    program to store and organize search results as well as
    track other activities associated with the systematic review
    process.
      Eg:    EndNote, RefWorks, Reference Manager etc..
RevMan
    RevMan is the systematic reviews software used by
    Cochrane to develop and publish Cochrane reviews
              http://www.cc-ims.net/RevMan


    References retrieved from literature searching can be
•
    imported into RevMan once they have been converted into
    plain text records formatted to Vancouver Style


    Most bibliographic software programs are capable of
    converting references into a RevMan compatible format
Cochrane Collaboration Support


    As part of the Cochrane Protocol approval process, a

    Trials Coordinator from your Research Group will
    advise/assist/review your search strategy
    Literature searching support from Cochrane varies with

    each Research Group
    Researchers may consider approaching a librarian from

    their own institution for assistance with their Cochrane
    review
Questions? Comments?

      Diane Lorenzetti MLS
Centre for Health & Policy Studies
   Institute of Health Economics
dllorenz@ucalgary.ca / 210-9319

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Literature Searching January 2009

  • 1. Literature Searching for Systematic Reviews January 2009 Diane Lorenzetti MLS Centre for Health & Policy Studies Institute of Health Economics dllorenz@ucalgary.ca
  • 2. A systematic review is.. “a review of the evidence on a clearly formulated question that uses systematic and explicit methods to identify, select and critically appraise relevant primary research, and to extract and analyse data from the studies that are included in the review Statistical methods (meta-analysis) may or may not be used.” (Undertaking systematic reviews of research on effectiveness: CRD's guidance for those carrying out or commissioning reviews (2001) http://www.york.ac.uk/inst/crd/report4.htm.)
  • 3. Characteristics of systematic literature searches Meticulous planning • Comprehensive method for searching the literature • Inclusion of a variety of sources of information • Identification of all relevant studies • Unbiased searching (eg: inclusion of non-english language • research and both published and unpublished studies) Transparent and reproducible search strategy •
  • 4. Before beginning a systematic review… Establish the need for a systematic review Document decisions made by the team during the question refinement and literature search process Develop a timeline for completion of each stage of your review
  • 5. A timeline may include: Pre-searching and question refinement • Development of inclusion/exclusion criteria • Development of search strategy • Literature searching (including searching of the grey • literature and strategy refinement) Development of abstract inclusion/exclusion criteria • Abstract review and selection • Document retrieval • Creation of data extraction form for full text article review • Full text article review and selection • Synthesis • Preparation of the final report • Many of these activities may occur simultaneously……………
  • 6. Pre-searching and Question Refinement Develop a clear question Conduct a pre-search prior to beginning your review Be prepared to revise your question based on the results of your pre-search
  • 7. PICO PICO is a model adopted by proponents of evidence-based medicine as an aid to question formulation
  • 8. Developing a research question using PICOS P = Population: the group under observation/study I = Intervention: the intervention, exposure or action of interest C = Comparison an alternative action or intervention against which the intervention of interest will be compared O = Outcome: a measure of the desired effect of the Intervention/Exposure S = Study design study designs appropriate for the research question under consideration
  • 9. Components of a research question (PICO format) Q1: Is a pre-recorded telephone health information service (Intervention) for mothers with toddlers (Population) more effective than printed information (Comparison) in increasing knowledge of accident prevention techniques? (Outcome) Q2: Is there a relationship between health care costs (Intervention) and patients’ (Population) use of health services (Outcome)?
  • 10. Keywords & synonyms Develop lists of keywords and synonyms for each PICO component of your research question before you begin searching for relevant literature. Keywords are independent of any one electronic database and will help you to be consistent as you map your search to each database/resource you use.
  • 11. Keywords & synonyms Eg: Is hypnotism an effective means of reducing smoking in adolescents? Concept/ Teenagers Hypnotism Smoking Facet P I O Keywords/ teenager(s) hypnotism smoke Synonyms teen(s) hypnosis smoking adolescent(s) hypnotherapy cigarette(s) youth(s) suggestion tobacco high school snuff student(s)
  • 12. Boolean operators: OR Used to connect synonyms, similar terms Broadens / expands a search Finds records with any of your search terms Eg: glucosamine OR n-acetyl-d-glucosamine
  • 13. Boolean operators: AND Used to combine search concepts/components Narrows / focuses a search Finds records with all your search terms Eg: osteoarthritis AND glucosamine
  • 14. Is hypnotism an effective means of reducing smoking in adolescents? PICO Teenagers Hypnotism Smoking Component P I O AND AND Keywords/ teenager(s) hypnotism smoke OR OR OR Synonyms teen(s) hypnosis smoking OR OR OR adolescent(s) hypnotherapy cigarette(s) OR OR OR high school suggestion tobacco student(s) OR snuff
  • 15. Sensitivity and specificity in literature searching Sensitivity (recall) The proportion of relevant articles identified by a search strategy as a percentage of all relevant articles on a given topic. It is a measure of the ability of a search strategy to identify all relevant articles. Specificity (precision) The proportion of relevant articles identified by a search strategy as a percentage of all articles (relevant and irrelevant) identified by that search. It is a measure of the ability of a search strategy to exclude irrelevant articles. Highly sensitive strategies tend to have low levels of precision and vice versa. In a systematic review, the aim is to maximize sensitivity while also attempting, insofar as it is possible, to maximize precision.
  • 16. Study design filters “a predefined search strategy designed to retrieve levels of evidence (RCTs, systematic reviews etc) or types of clinical queries (diagnosis, prognosis, etiology, treatment) when combined with the subject search terms of your choice. They are also referred to as hedges, Clinical Queries (USA), or optimal search strategies.” (BestBETS Search Strategies http://www.bestbets.org/links/strategies.html) Used to limit search results by study design Study design filters can increase the specificity of search results
  • 17. Study design terms found in select filters Qualitative research (e.g. “findings”, “qualitative”, “interview$”) Diagnosis (e.g. “sensitivity”, “specificity”) Prognosis (e.g. “follow-up studies”, “incidence”) Intervention/Therapy (e.g. “randomised controlled trial.pt.”) Causation (e.g. “risk”, “risk factor” and “cohort studies”)
  • 18. RCT Sensitive filter for OVID MEDLINE searches (Cochrane Collaboration) (controlled clinical trial or randomized controlled trial or 1. meta analysis).pt. clinical trials as topic/ 2. (placebo$ or random$ or trial$).ti,ab. 3. 1 or 2 or 3 4. limit 4 to animals 5. limit 4 to (animals and humans) 6. 5 not 6 7. 4 not 7 8.
  • 19. RCT Sensitive filter for OVID EMBASE searches (Cochrane Collaboration) cross-over procedure/ or double-blind procedure/ or 1. randomized controlled trial/ or single-blind procedure/ (allocat$ or assign$ or cross over$ or crossover$ or 2. (double ADJ blind$) or factorial or placebo$ or random$ or (single ADJ blind$) or volunteer$).ti,ab. 1 or 2 3. limit 3 to animals 4. limit 3 to (animals and humans) 5. 4 not 5 6. 3 not 6 7.
  • 20. Bibliographic database selection No one bibliographic database is comprehensive enough to index all published literature on a topic. MEDLINE indexes approx 5000 of the 20,000 biomedical journals published. Overlap between databases is common Extent of overlap between MEDLINE and EMBASE is estimated to be 34%; ranging between 10% and 75%, depending on topic Selection will vary with the subject. When choosing electronic databases, consider the multidisciplinary needs of your research question & select databases that reflect these needs
  • 21. Bibliographic databases for clinical research topics MEDLINE/PubMed  EMBASE  Cochrane Database of Systematic Reviews  Cochrane CENTRAL Register of Controlled Trials  CINAHL  PsycINFO  International Pharmaceutical Abstracts 
  • 22. Bibliographic databases for non clinical research topics ABI Inform  health policy, health services administration, economics of health care  ERIC  health promotion, health education  Social Sciences Abstracts & Sociological Abstracts  health policy, health promotion, patient access to and satisfaction with health care  Econlit  economics of health care  Philosophers’ Index  Ethical aspects of health care procedures and delivery 
  • 23. Database Thesauri/Subject Lists Search both general and specific thesaurus/subject terms • as appropriate MEDLINE examples: Mental health[MeSH] plus MeSH terms for specific mental health conditions such as schizophrenia[MeSH], alcoholism[MeSH] etc…. as appropriate Angiotensin-converting enzyme inhibitors[MeSH] (ACE inhibitors used to treat high blood pressure and heart failure) plus captopril[MeSH] (a specific ACE inhibiting drug)
  • 24. Broadening a search Use broader, more general search terms Include a variety of synonyms Apply truncation symbols to word stems to retrieve alternate spellings, singular/plural word forms & word variants Drop the least important concepts from your search – eg: outcomes Apply fewer / no limits to your search
  • 25. Truncation Finds variations of a word stem Eg: plan$ retrieves plan, plans, planner, planners, and planning Truncation should only be used with keyword or title/abstract word searching - not with subject heading searching Truncation symbol varies with database - usually * but OVID databases use $
  • 26. Narrowing a search Use more specific search terms Decrease # of synonyms included in the search Eliminate or limit word truncation Add concepts to your search Apply limits
  • 27. Searching Norms for Systematic Reviews Search both thesaurus/subject terms and text • (title/abstract) words Include both synonyms and truncated forms of text words • in your search Include CAS Registry numbers and generic/brand names • in drug searches Unless there is a compelling reason (eg: changes in • policies, procedures, interventions etc…) do not limit your search by date or language
  • 28. Pre-testing Your Search Strategy Select one electronic database on which to craft, test and finalize your search strategy Be prepared to run multiple tests of your search strategy with your research team before finalizing your approach If you have pre-identified key studies, these studies can act as a litmus test of the effectiveness of your search strategy
  • 29. Going beyond Electronic Databases Consider searching beyond electronic databases to locate • relevant studies: a) Reference lists of key articles b) Hand searching of key journals c) Hand searching of key conference proceedings d) Consultation with experts e) Citation searching with Web of Science f) Grey literature
  • 30. Grey literature may include….. Unpublished or ongoing studies  Conference and meeting proceedings and abstracts  Dissertations & theses  Newsletters  Reports of research organizations and government  agencies Informal communications  http://library.ucalgary.ca/branches/hsl/greylit
  • 31. Why hand search journals? Key journals may not be indexed in mainstream electronic  databases Examples: complementary and alternative medicine & health  promotion Inaccurate indexing of studies in electronic databases  Incomplete search strategies may result in studies being  missed during database searching Journals indexed in databases such as MEDLINE and  EMBASE may be indexed selectively Abstracts, letters or conference reports may not be indexed  in electronic databases
  • 32. Cochrane Collaboration hand searching initiative Cochrane collaborators around the world hand search  health care journals and conference proceedings to locate randomized controlled trials of healthcare interventions. RCTs found are entered into the Cochrane CENTRAL  Register of Controlled Trials. Currently, over 2300 journals are being searched.  The Master List of hand-searched journals can be  viewed/searched online at http://apps1.jhsph.edu/cochrane/masterlist.asp
  • 33. Tracking your Literature Search Record information on all resources searched (and when),  search terms used, when the search was completed and how many records/results were found Track studies retrieved, ordered and received Consider using a bibliographic management software program to store and organize search results as well as track other activities associated with the systematic review process. Eg: EndNote, RefWorks, Reference Manager etc..
  • 34. RevMan RevMan is the systematic reviews software used by Cochrane to develop and publish Cochrane reviews http://www.cc-ims.net/RevMan References retrieved from literature searching can be • imported into RevMan once they have been converted into plain text records formatted to Vancouver Style Most bibliographic software programs are capable of converting references into a RevMan compatible format
  • 35. Cochrane Collaboration Support As part of the Cochrane Protocol approval process, a  Trials Coordinator from your Research Group will advise/assist/review your search strategy Literature searching support from Cochrane varies with  each Research Group Researchers may consider approaching a librarian from  their own institution for assistance with their Cochrane review
  • 36. Questions? Comments? Diane Lorenzetti MLS Centre for Health & Policy Studies Institute of Health Economics dllorenz@ucalgary.ca / 210-9319