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3

Internet Tool in life Sciences
          Research
          D.ALQahtani
Lessons
   1- Essentials

     2- Searching

       3- Using MeSH

          4- Working with Results

              5- Jeopardy game
               D.ALQahtani
3- Using MeSH



    D.ALQahtani
3- Using MeSH


Basically , when we search , we use


        keywords

         or /and MeSH terms




                    D.ALQahtani
3- Using MeSH


            keywords


         Is fast and easy - usually finds what
        you need
         Often automatically maps your
        keyword to the appropriate MeSH term,
        including it in your search




                D.ALQahtani
3- Using MeSH


         MeSH Search

        MeSH Retrieves Subjects – Not Words:
        When you search with a MeSH term, you
        are searching for a subject
        (not a keyword) match




                D.ALQahtani
3- Using MeSH


                        Example

Searching for the keyword "aids"
retrieves articles on :
 AIDS virus, as well as articles on hearing
aids, audiovisual aids, clinical aids,
teaching aids etc.

                 Using the MeSH term for AIDS:
                 Acquired Immunodeficiency Syndrome
                 [MeSH] will limit your retrieval to the
                 relevant subject
                            D.ALQahtani
3- Using MeSH


                 When MeSH Helps and When it Doesn't ?


 Type of
                     Topic                                Explanation
 Search
One Aspect
              Adverse effects of the
of a Larger                            A keyword search retrieves over 800 hits. A MeSH
                 MMR vaccine
   Topic                               search with subheadings quickly provides focus

Rare or New                            A keyword search is best for rare or new topics.
              Turner's hypoplasia
   Topic                               There is no MeSH term for Turner's hypoplasia


Complicated     Adverse effects of     A keyword search here is too broad. A MeSH search
  Topic       fluoride on newborn      helps focus on the relationship between the terms.

                                       D.ALQahtani
3- Using MeSH


          Selecting medical subject
        headings (MeSH) for a search




                D.ALQahtani
3- Using MeSH


         Consider doing a MeSH Search




       F
                D.ALQahtani
3- Using MeSH


Use MeSH subheadings to quickly focus your
search on a specific aspect of a topic. For
example: "Etiology of aphthous ulcer ",
"Genetics of amelogenesis imperfecta"



      Tip: When your topic contains the word "of"
      consider selecting MeSH and MeSH subheadings
      for your search
                   D.ALQahtani
3- Using MeSH


Also Consider doing a MeSH Search If:


                                     Your keyword
                                   search results in a
                                    retrieval that is
                                    Too large

                     D.ALQahtani
3- Using MeSH




                D.ALQahtani
3- Using MeSH

MeSH will probably NOT   help you if you search

                 A new or emerging medical concept


                    A recently published articles




                   D.ALQahtani
3- Using MeSH


Scenario




  You need to find articles on drug treatments for aphthous ulcer !




                           D.ALQahtani
3- Using MeSH


To see the difference between searches, start with a keyword search




    Clear the previous search if it is still active
    In the query box, type aphthous ulcer AND
   drug treatment
    Click GO




                           D.ALQahtani
3- Using MeSH




You should retrieve about 1097 citations. This is more than is
optimal. More importantly, inspection would show that drug
treatment aphthous ulcer is not the main focus of many of these
citations. (Some of the articles are about aphthous ulcer , but
mention drug treatment of other conditions


   We need to increase the search precision

                         D.ALQahtani
STEPS

D.ALQahtani
Locate and Select MeSH Terms From the MeSH
database




                                     1




                       D.ALQahtani
Locate and Select MeSH Terms From the MeSH
database



                            2


3




                       D.ALQahtani
Locate and Select MeSH Terms From the MeSH
    database




                                                   6
                                                   7

4

5
                http://www.ncbi.nlm.nih.gov/mesh?term=aph
                thous%20ulcer
                                D.ALQahtani
3- Using MeSH


WHY
                           Subheading ( STEP 4)

Attaching subheadings to a MeSH term allows you to
focus on a specific aspect of your topic. In this
example, we retrieved citations about drug therapy of
aphthous ulcer . We did NOT retrieve citations where "
aphthous ulcer " and "drug therapy" are both
mentioned as separate concepts

                       D.ALQahtani
3- Using MeSH


WHY                       Restrict Search to Major Topic
                          Headings Only( STEP 5)



So that your articles will have drug therapy of
aphthous ulcer as a major          focus


                     D.ALQahtani
SO, 540 focused citations in your results down from
about 1097 retrieved at the beginning of this example




                          D.ALQahtani
3- Using MeSH




                D.ALQahtani
3- Using MeSH


          Quick Summery
 A MeSH search is a subject search
 Consider selecting MeSH terms if your search
results are off topic or too large
 A MeSH search usually results in a smaller retrieval
than a keyword search. Selecting MeSH terms limits
your search to the MeSH field
MeSH subheadings allow you to quickly focus on
one aspect of a topic

                       D.ALQahtani
3- Using MeSH


          Quick Summery
 Consider restricting your MeSH search to Major
Topics Only
MeSH will not usually help you if you need to
research a new or rare topic or the most recent articles
on a topic
 Display search sets in Citation format to view the
MeSH terms for each citation.


                        D.ALQahtani
Reference


1- Gustave L. and Janet W. Levy Library of Mount Sinai School of Medicine




                               D.ALQahtani
End of the lesson
THANK YOU
                           3
             D.ALQahtani

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Lesson 3: Internet Tool in life Sciences Research

  • 1. 3 Internet Tool in life Sciences Research D.ALQahtani
  • 2. Lessons 1- Essentials 2- Searching 3- Using MeSH 4- Working with Results 5- Jeopardy game D.ALQahtani
  • 3. 3- Using MeSH D.ALQahtani
  • 4. 3- Using MeSH Basically , when we search , we use keywords or /and MeSH terms D.ALQahtani
  • 5. 3- Using MeSH keywords  Is fast and easy - usually finds what you need  Often automatically maps your keyword to the appropriate MeSH term, including it in your search D.ALQahtani
  • 6. 3- Using MeSH MeSH Search MeSH Retrieves Subjects – Not Words: When you search with a MeSH term, you are searching for a subject (not a keyword) match D.ALQahtani
  • 7. 3- Using MeSH Example Searching for the keyword "aids" retrieves articles on : AIDS virus, as well as articles on hearing aids, audiovisual aids, clinical aids, teaching aids etc. Using the MeSH term for AIDS: Acquired Immunodeficiency Syndrome [MeSH] will limit your retrieval to the relevant subject D.ALQahtani
  • 8. 3- Using MeSH When MeSH Helps and When it Doesn't ? Type of Topic Explanation Search One Aspect Adverse effects of the of a Larger A keyword search retrieves over 800 hits. A MeSH MMR vaccine Topic search with subheadings quickly provides focus Rare or New A keyword search is best for rare or new topics. Turner's hypoplasia Topic There is no MeSH term for Turner's hypoplasia Complicated Adverse effects of A keyword search here is too broad. A MeSH search Topic fluoride on newborn helps focus on the relationship between the terms. D.ALQahtani
  • 9. 3- Using MeSH Selecting medical subject headings (MeSH) for a search D.ALQahtani
  • 10. 3- Using MeSH Consider doing a MeSH Search F D.ALQahtani
  • 11. 3- Using MeSH Use MeSH subheadings to quickly focus your search on a specific aspect of a topic. For example: "Etiology of aphthous ulcer ", "Genetics of amelogenesis imperfecta" Tip: When your topic contains the word "of" consider selecting MeSH and MeSH subheadings for your search D.ALQahtani
  • 12. 3- Using MeSH Also Consider doing a MeSH Search If: Your keyword search results in a retrieval that is Too large D.ALQahtani
  • 13. 3- Using MeSH D.ALQahtani
  • 14. 3- Using MeSH MeSH will probably NOT help you if you search A new or emerging medical concept A recently published articles D.ALQahtani
  • 15. 3- Using MeSH Scenario You need to find articles on drug treatments for aphthous ulcer ! D.ALQahtani
  • 16. 3- Using MeSH To see the difference between searches, start with a keyword search  Clear the previous search if it is still active  In the query box, type aphthous ulcer AND drug treatment  Click GO D.ALQahtani
  • 17. 3- Using MeSH You should retrieve about 1097 citations. This is more than is optimal. More importantly, inspection would show that drug treatment aphthous ulcer is not the main focus of many of these citations. (Some of the articles are about aphthous ulcer , but mention drug treatment of other conditions We need to increase the search precision D.ALQahtani
  • 19. Locate and Select MeSH Terms From the MeSH database 1 D.ALQahtani
  • 20. Locate and Select MeSH Terms From the MeSH database 2 3 D.ALQahtani
  • 21. Locate and Select MeSH Terms From the MeSH database 6 7 4 5 http://www.ncbi.nlm.nih.gov/mesh?term=aph thous%20ulcer D.ALQahtani
  • 22. 3- Using MeSH WHY Subheading ( STEP 4) Attaching subheadings to a MeSH term allows you to focus on a specific aspect of your topic. In this example, we retrieved citations about drug therapy of aphthous ulcer . We did NOT retrieve citations where " aphthous ulcer " and "drug therapy" are both mentioned as separate concepts D.ALQahtani
  • 23. 3- Using MeSH WHY Restrict Search to Major Topic Headings Only( STEP 5) So that your articles will have drug therapy of aphthous ulcer as a major focus D.ALQahtani
  • 24. SO, 540 focused citations in your results down from about 1097 retrieved at the beginning of this example D.ALQahtani
  • 25. 3- Using MeSH D.ALQahtani
  • 26. 3- Using MeSH Quick Summery  A MeSH search is a subject search  Consider selecting MeSH terms if your search results are off topic or too large  A MeSH search usually results in a smaller retrieval than a keyword search. Selecting MeSH terms limits your search to the MeSH field MeSH subheadings allow you to quickly focus on one aspect of a topic D.ALQahtani
  • 27. 3- Using MeSH Quick Summery  Consider restricting your MeSH search to Major Topics Only MeSH will not usually help you if you need to research a new or rare topic or the most recent articles on a topic  Display search sets in Citation format to view the MeSH terms for each citation. D.ALQahtani
  • 28. Reference 1- Gustave L. and Janet W. Levy Library of Mount Sinai School of Medicine D.ALQahtani
  • 29. End of the lesson THANK YOU 3 D.ALQahtani