T.M. River, 1937
Modified from Koch’s Postulates (proof of bacterial diseases)
Isolate virus from diseased hosts.
Cultivation of virus in host cells.
Proof of filterability.
Production of a comparable disease when the cultivated virus is used to infect experimental animals.
Reisolation of the same virus from the infected experimental animal.
Detection of a specific immune response to the virus.
Much more expensive and difficult to study animal viruses than bacteriophages
Cultivation in host cells
Living animal
Embryonated chicken eggs
Cell or tissue culture (= in vitro)
Over 60% of all infectious disease cases seen by a physician are due to viral infections.
Quality of patient specimens and their transport to the laboratory is importantViral Diagnostics in the Clinical Laboratory
Types of specimens:-
Respiratory tract infections: Nasal and bronchial washings, throat and nasal swabs, sputum
Eye infections: throat and Conjunctival swab/scraping
Gastrointestinal tract infections: stool and rectal swabs
Vesicular rash: vesicle fluid, skin scrapings
Maculopapular rash: throat, stool, and rectal swabs
CNS (encephalitis and meningitis cases): stool, tissue, saliva, brain biopsy, cerebrospinal fluid
Genital infections: vesicle fluid or swab
Urinary tract infections: urine
Blood borne infections: blood
Sterile, leak proof container
Minimal interval
Transport media
Viral infusion broth (VIB)
Sucrose-phosphate-glutamate (SPG)
Storage temperature:
4 deg C for up to 96 hours
Minus 70 deg C beyond 96 hours
Repeated cycles of freezing and thawing to be avoided
106 virus particles per ml required for visualization,
50,000 - 60,000 magnification normally used.Specimens are negatively stained by Potassium phosphotungstate and scanned under EM
Viruses may be detected in the following specimens.
Virus particles are detected and identified on the basis of morphology.
A) Shape
Rabiesvirus –bullet shaped
Rotavirus –Cart wheel
Coronavirus –petal shaped peplomers
Adenovirus –space vehicle shaped
Astrovirus ---Star shaped
B) Direct detection from specimens
For viruses that are difficult to cultivate ,EM can be used as primary tool for diagnosis
Faeces Rotavirus, Adenovirus
Norwalk like viruses
Astrovirus, Calicivirus
Vesicle Fluid HSV
VZV
Skin scrapings papillomavirus, orf
molluscum contagiosum
As an alternative to tissue culture
As tissues culture is time consuming and technically demanding ,EM is used as an alternative :-
1) Vesicular rashes –HSV and VZV detection from vesicular fluid
2) Meningitis—Detection of enterovirus and mumps from CSF.
Virus detection from tissue cultures EM can be used for detection of viral growth in tissue culture
The sensitivity and specificity of EM can be improved by adding specific antiviral antibody to the specimen to aggregate the virus particles which can be centrifuged
The sediment is negatively stained and viewed under EM
Direct immumofluroscence
Viral infections can be diagnosed through serology, virus isolation, or direct demonstration of the virus. Serology detects virus antibodies through tests like ELISA, RIA, complement fixation, immunofluorescence, and neutralization. Virus isolation involves culturing patient samples in tissue culture or laboratory animals to detect viral growth. Direct demonstration identifies the virus or its antigens in patient samples using techniques like immunofluorescence, electron microscopy, probes, or by finding inclusion bodies in infected cells.
Zygomycosis is a rare fungal infection caused by bread mold fungi called mucormycetes. It most commonly affects people with weakened immune systems from conditions like diabetes, cancer, or organ transplant. The fungi are found in soil and decaying matter. Symptoms depend on the infected area but can include sinus pain, coughing blood, or skin lesions. Risk factors are diabetes, cancer treatments, corticosteroids, or skin injuries. Diagnosis involves tissue samples analyzed microscopically or in culture. Treatment requires antifungal medications like amphotericin B and sometimes surgery to remove infected tissue. Prevention focuses on controlling underlying illnesses that weaken the immune system.
The document discusses viral oncogenesis and viruses associated with human tumors. It provides a brief history and discoveries related to oncogenic viruses over the years. Some key points include that approximately 10-20% of human tumors are caused by viruses. Viruses can cause cancer through direct introduction of viral oncogenes or indirect modulation of cellular genes. Some major viruses associated with human cancers include human papillomavirus, Epstein-Barr virus, hepatitis B and C viruses, and human T-cell leukemia virus.
This document discusses laboratory diagnosis of viral diseases. It describes various methods used for direct detection of viruses from specimens including electron microscopy, fluorescent microscopy, and light microscopy. It also discusses detection of viral antigens and antibodies. Molecular methods like PCR and virus isolation techniques including cell culture are explained. Specimen collection guidelines and various specimen types are provided.
The document discusses Epstein-Barr virus (EBV), which can cause infectious mononucleosis and is associated with cancers like Burkitt's lymphoma and nasopharyngeal carcinoma. EBV exists in three phases - latent, early, and late - and is transmitted through saliva. It infects B cells and sometimes escapes immune surveillance, causing proliferation. Diagnosis of EBV infections involves detecting heterophil antibodies through tests like Paul-Bunnell and Davidsohn differential. EBV-specific antibody testing provides further confirmation.
This document discusses various methods for laboratory diagnosis of viral infections. It begins with an overview of the viral pathogenesis process, from attachment and entry into host cells, to replication of viral components, assembly, and release of new virus particles. The document then covers direct detection methods like electron microscopy, immunofluorescence microscopy, and light microscopy to identify inclusion bodies. It discusses serological tests to detect viral antigens or antibodies. Molecular methods like nucleic acid probes and PCR are mentioned. Isolation methods using animal inoculation, embryonated egg cultures, and tissue cultures are described in detail. The document provides a comprehensive overview of approaches for laboratory diagnosis of viral diseases.
The document discusses the storage and collection of biological specimens for viral testing. It lists the types of specimens that can be collected from different sites of infection, such as respiratory tract infections, eye infections, gastrointestinal infections, skin rashes, and bloodborne infections. Specimens include nasal swabs, throat swabs, sputum, stool samples, vesicle fluid, tissue biopsies, cerebrospinal fluid, and blood. Direct examination methods to detect viruses or parts of viruses in clinical specimens are also covered, such as electron microscopy, antigen detection assays, and molecular detection of viral nucleic acids.
This document discusses protoplast isolation and cell culture. It begins by defining a protoplast as a plant cell without a cell wall that contains normal cell organelles. Protoplasts can be isolated from actively growing tissues using mechanical and enzymatic methods. The mechanical method involves plasmolysis and cutting of tissues, while the enzymatic method uses lytic enzymes to remove the cell wall. Cell culture methods are also discussed, including primary cell cultures derived directly from tissues that have a finite lifespan, and continuous cell lines derived from tumors that can divide indefinitely. Different cell types, culture media, and tissue culture techniques are described.
Viral infections can be diagnosed through serology, virus isolation, or direct demonstration of the virus. Serology detects virus antibodies through tests like ELISA, RIA, complement fixation, immunofluorescence, and neutralization. Virus isolation involves culturing patient samples in tissue culture or laboratory animals to detect viral growth. Direct demonstration identifies the virus or its antigens in patient samples using techniques like immunofluorescence, electron microscopy, probes, or by finding inclusion bodies in infected cells.
Zygomycosis is a rare fungal infection caused by bread mold fungi called mucormycetes. It most commonly affects people with weakened immune systems from conditions like diabetes, cancer, or organ transplant. The fungi are found in soil and decaying matter. Symptoms depend on the infected area but can include sinus pain, coughing blood, or skin lesions. Risk factors are diabetes, cancer treatments, corticosteroids, or skin injuries. Diagnosis involves tissue samples analyzed microscopically or in culture. Treatment requires antifungal medications like amphotericin B and sometimes surgery to remove infected tissue. Prevention focuses on controlling underlying illnesses that weaken the immune system.
The document discusses viral oncogenesis and viruses associated with human tumors. It provides a brief history and discoveries related to oncogenic viruses over the years. Some key points include that approximately 10-20% of human tumors are caused by viruses. Viruses can cause cancer through direct introduction of viral oncogenes or indirect modulation of cellular genes. Some major viruses associated with human cancers include human papillomavirus, Epstein-Barr virus, hepatitis B and C viruses, and human T-cell leukemia virus.
This document discusses laboratory diagnosis of viral diseases. It describes various methods used for direct detection of viruses from specimens including electron microscopy, fluorescent microscopy, and light microscopy. It also discusses detection of viral antigens and antibodies. Molecular methods like PCR and virus isolation techniques including cell culture are explained. Specimen collection guidelines and various specimen types are provided.
The document discusses Epstein-Barr virus (EBV), which can cause infectious mononucleosis and is associated with cancers like Burkitt's lymphoma and nasopharyngeal carcinoma. EBV exists in three phases - latent, early, and late - and is transmitted through saliva. It infects B cells and sometimes escapes immune surveillance, causing proliferation. Diagnosis of EBV infections involves detecting heterophil antibodies through tests like Paul-Bunnell and Davidsohn differential. EBV-specific antibody testing provides further confirmation.
This document discusses various methods for laboratory diagnosis of viral infections. It begins with an overview of the viral pathogenesis process, from attachment and entry into host cells, to replication of viral components, assembly, and release of new virus particles. The document then covers direct detection methods like electron microscopy, immunofluorescence microscopy, and light microscopy to identify inclusion bodies. It discusses serological tests to detect viral antigens or antibodies. Molecular methods like nucleic acid probes and PCR are mentioned. Isolation methods using animal inoculation, embryonated egg cultures, and tissue cultures are described in detail. The document provides a comprehensive overview of approaches for laboratory diagnosis of viral diseases.
The document discusses the storage and collection of biological specimens for viral testing. It lists the types of specimens that can be collected from different sites of infection, such as respiratory tract infections, eye infections, gastrointestinal infections, skin rashes, and bloodborne infections. Specimens include nasal swabs, throat swabs, sputum, stool samples, vesicle fluid, tissue biopsies, cerebrospinal fluid, and blood. Direct examination methods to detect viruses or parts of viruses in clinical specimens are also covered, such as electron microscopy, antigen detection assays, and molecular detection of viral nucleic acids.
This document discusses protoplast isolation and cell culture. It begins by defining a protoplast as a plant cell without a cell wall that contains normal cell organelles. Protoplasts can be isolated from actively growing tissues using mechanical and enzymatic methods. The mechanical method involves plasmolysis and cutting of tissues, while the enzymatic method uses lytic enzymes to remove the cell wall. Cell culture methods are also discussed, including primary cell cultures derived directly from tissues that have a finite lifespan, and continuous cell lines derived from tumors that can divide indefinitely. Different cell types, culture media, and tissue culture techniques are described.
The document discusses laboratory diagnosis of HIV infection and its treatment. [1] Several specific tests are used to detect HIV infection including antigen detection, virus isolation, viral nucleic acid detection and antibody detection. [2] Non-specific tests like complete blood count and CD4/CD8 ratio are also used. [3] Opportunistic infections are diagnosed using microscopy, culture and specific tests. HIV treatment involves the use of several classes of antiretroviral drugs that target different stages of the viral lifecycle alone or in combination therapy.
Oncogenic viruses are viruses that can cause cancer. They do so by inserting their DNA into host cells and altering gene expression in ways that promote uncontrolled cell growth and division. Some key points:
- Viruses like HPV, EBV, HBV can lay dormant in the body for years before causing tumors by disrupting tumor suppressor genes or activating oncogenes.
- Oncogenic viruses establish persistent infections to evade the immune system and immunosuppression increases cancer risk.
- Viral oncogenes are incorporated into host cell DNA and cause overexpression of cellular genes involved in growth regulation.
- Cancers linked to oncogenic viruses include cervical cancer from HPV, lymphomas
The Epstein–Barr virus (EBV), also called human herpesvirus 4 (HHV-4), is one of eight known human herpesvirus types in the herpes family, and is one of the most common viruses in humans.
This document discusses virus-host interactions and the genetic modifications that viruses undergo. It covers topics like mutations, interactions between viral genes including genetic recombination and reassortment, and viral interference. It also describes the pathogenesis of viral infections from transmission and spread, to the primary site of replication and clinical manifestations. Additionally, it discusses morphological changes in host cells caused by viruses, the different types of infections that can occur at the cellular level, and the properties and mechanisms of action of interferons.
Poxviruses are brick or oval-shaped viruses with large double-stranded DNA genomes. Poxviruses exist throughout the world and cause disease in humans and many other types of animals. Poxvirus infections typically result in the formation of lesions, skin nodules, or disseminated rash.
The document discusses superficial mycoses, which are fungal infections confined to the outer layer of the skin. It describes four types: pityriasis versicolor caused by Malassezia furfur presenting as discolored patches; tinea nigra caused by Exophiala werneckii appearing as brown-black palmar lesions; black piedra caused by Piedraia hortae forming hard nodules on hair; and white piedra caused by Trichosporon beigelli producing a soft white growth on hair. Diagnosis involves potassium hydroxide preparation of skin or hair samples or fungal culture. Treatment consists of topical antifungals like imidazoles or
This document discusses laboratory diagnosis of viral infections through three main approaches: direct detection of viruses, virus isolation, and serology. Direct detection methods include electron microscopy, antigen detection tests, and molecular methods like PCR. Virus isolation involves inoculating samples into cell cultures or animals to detect viral growth. Serology detects antibodies to viruses through techniques like immunofluorescence, ELISA, and western blot. Each method has advantages and limitations for diagnosing different types of viral infections.
Laboratory diagnosis of_infectious_diseasesShilpa k
This document summarizes the diagnostic cycle for infectious diseases and provides guidelines for collecting and transporting various specimen types, including blood, respiratory samples, urine, wounds, and stool. It describes the pre-analytical, analytical, and post-analytical phases of diagnosis and outlines optimal practices for collecting, transporting, and processing samples to accurately identify pathogens and inform treatment. Key steps include using appropriate collection methods and containers, maintaining sample integrity during transport, and rejecting samples that do not meet criteria.
1) Making an accurate diagnosis allows for better patient care through appropriate antibiotic use and prevention measures, while also reducing expenses.
2) Proper specimen collection and transport is crucial to protect samples from contamination and select the correct media for identification of infectious agents.
3) There are five main approaches to identifying infectious agents - staining techniques, immune detection methods, culture-based techniques, antigen detection assays, and nucleic acid-based methods like PCR.
Oncogenic viruses are viruses that can cause cancer. They do this by inducing genetic changes that alter the expression or function of proteins involved in controlling cell growth and division. There are RNA viruses and DNA viruses that are oncogenic. Retroviruses are a type of RNA virus that contain the enzyme reverse transcriptase and can integrate near proto-oncogenes, activating their expression. DNA viruses like papillomavirus and polyomavirus can contain oncogenes that encode transforming proteins to stimulate tumor formation. Many viruses are associated with specific types of cancer in animals and humans.
This document discusses bacteriological culture media used for the cultivation of microbes. It defines culture and cultivation as the process of allowing bacteria to multiply in an artificial environment providing optimal nutrients. Culture media refers to the artificial foods used for bacterial growth. The document outlines different types of culture media including solid, liquid, and semi-solid varieties. It also describes classification of bacteria based on their ability to be cultured, such as ordinary, fastidious, and unculturable bacteria. The key components, uses, and characteristics of different culture media are summarized.
Papovaviruses are a family of small, non-enveloped viruses with circular double-stranded DNA genomes. The family includes the genera Papillomavirus and Polyomavirus. Papillomaviruses can cause warts and some strains are associated with cancers like cervical cancer. Polyomaviruses can cause diseases in immunocompromised individuals like progressive multifocal leukoencephalopathy. Both viruses establish latent, lifelong infections and have oncogenic properties through viral proteins that interact with host cell growth regulators.
The document summarizes information about Hepatitis B virus (HBV). It discusses:
1. The discovery of HBV in 1965 and its classification in the Hepadnaviridae family.
2. HBV's morphology as a 42nm DNA virus with an outer envelope and inner core. It expresses surface, core, and e antigens.
3. HBV transmission occurs through bodily fluids and is most common in areas with large carrier populations like China and India. Carriers can be super carriers with high infectivity or simple carriers.
The document discusses BK polyomavirus, which is a double-stranded DNA virus that can cause BK virus nephropathy (BKVN) in transplant recipients. It is transmitted through multiple routes and reactivates due to immunosuppression after transplantation. BKVN diagnosis involves detecting viral DNA in plasma/urine and identifying viral inclusions on allograft biopsy. While prevention is important, no treatment has proven fully effective against established BKVN. Common approaches include decreasing immunosuppression and off-label use of antivirals like cidofovir or IV immunoglobulin.
This document provides an overview of general virology including:
- Viruses are obligate intracellular parasites that use host cell machinery for replication and lack cellular organization. They contain nucleic acid and a capsid or nucleocapsid.
- Viruses have icosahedral or helical capsid symmetry and some have envelopes. They carry out enzymatic activities like reverse transcriptase.
- Viruses are classified based on nucleic acid type, presence of envelope, size, route of transmission. Examples include adenoviruses, herpesviruses, influenza, HIV.
- The viral replication cycle involves adsorption, penetration, uncoating, replication, assembly and release. Different strategies are used
Proteus is a gram-negative bacteria commonly found in the gut that can cause urinary tract infections. It is motile due to flagella and has a fishy odor. P. mirabilis and P. vulgaris are medically important species, with P. mirabilis causing most UTIs through production of urease which hydrolyzes urea to ammonia, raising urine pH. Symptoms include urethritis, cystitis and pyelonephritis. It is identified in culture through swarming motility and biochemical tests. Virulence factors include urease, hemolytic toxins, and motility. Treatment involves antibiotics like beta-lactams, aminoglycosides and fluor
Adenoviruses are common pathogens that infect humans and animals. Over 100 serotypes have been identified that infect humans, causing respiratory illness, conjunctivitis, and gastroenteritis. Adenoviruses are non-enveloped viruses containing double-stranded DNA. The virus attaches and enters cells using cellular receptors and integrins, and undergoes replication in the nucleus. New viral particles are assembled and released through cell lysis to infect other cells. Symptoms vary depending on serotype and site of infection.
This document discusses various techniques for diagnosing and studying viruses in a laboratory setting. It describes growing viruses in cell cultures and embryonated eggs, observing cytopathic effects, and quantifying viruses using plaque assays, particle counting, and hemagglutination assays. It also covers transforming infected cells to develop continuous cell lines and detecting viral proteins and antibodies using techniques like western blotting. The goal is to isolate, propagate, quantify, and identify viruses for research and clinical diagnosis.
Interpretation of Hepatitis B Serologic Test Resultsru5dy
With the Laboratory Results you need to have interpretation of the patients who have check their blood for Hepatitis B test. This slide will guide you through how to interpretation of Hepatitis B Test Laboratory Results.
LABORATORY DIAGNOSIS OF VIRAL INFECTIONS.pdfWani Insha
Laboratory diagnosis of viral infections is useful for the following purposes:
To start antiviral drugs for those viral infections for which specific drugs are available such as herpes, CMV, HIV, influenza and respiratory syncytial virus (RSV)
Screening of blood donors for HIV, hepatitis B and hepatitis C-helps in prevention of transfusion transmitted infections
Surveillance purpose: To assess the disease burden in the community by estimating the prevalence and incidence of viral infections
For outbreak or epidemic investigation, e.g. influenza epidemics, dengue outbreaks-to initiate appropriate control measures
To start post-exposure prophylaxis of antiretroviral drugs to the health care workers following needle stick injury.
To initiate certain measures: For example,
If rubella is diagnosed in the first trimester of pregnancy, termination of pregnancy is recommended
If newborn is diagnosed to have hepatitis B infection, then immunoglobulins (HBIG) should be started within 12 hours of birth.
Report of recent microbial techniques developed in diagnosing some common dis...SATYAM PANDEY
This document summarizes several common diseases and their microbial diagnosis techniques. It discusses typhoid, tuberculosis, malaria, cholera, hepatitis, meningitis, syphilis and gonorrhea. For each disease, it describes the causative organism, traditional diagnosis methods like culture and microscopy, and newer techniques such as immunoassays, PCR and nucleic acid amplification tests that provide faster and more accurate detection of pathogens.
The document discusses laboratory diagnosis of HIV infection and its treatment. [1] Several specific tests are used to detect HIV infection including antigen detection, virus isolation, viral nucleic acid detection and antibody detection. [2] Non-specific tests like complete blood count and CD4/CD8 ratio are also used. [3] Opportunistic infections are diagnosed using microscopy, culture and specific tests. HIV treatment involves the use of several classes of antiretroviral drugs that target different stages of the viral lifecycle alone or in combination therapy.
Oncogenic viruses are viruses that can cause cancer. They do so by inserting their DNA into host cells and altering gene expression in ways that promote uncontrolled cell growth and division. Some key points:
- Viruses like HPV, EBV, HBV can lay dormant in the body for years before causing tumors by disrupting tumor suppressor genes or activating oncogenes.
- Oncogenic viruses establish persistent infections to evade the immune system and immunosuppression increases cancer risk.
- Viral oncogenes are incorporated into host cell DNA and cause overexpression of cellular genes involved in growth regulation.
- Cancers linked to oncogenic viruses include cervical cancer from HPV, lymphomas
The Epstein–Barr virus (EBV), also called human herpesvirus 4 (HHV-4), is one of eight known human herpesvirus types in the herpes family, and is one of the most common viruses in humans.
This document discusses virus-host interactions and the genetic modifications that viruses undergo. It covers topics like mutations, interactions between viral genes including genetic recombination and reassortment, and viral interference. It also describes the pathogenesis of viral infections from transmission and spread, to the primary site of replication and clinical manifestations. Additionally, it discusses morphological changes in host cells caused by viruses, the different types of infections that can occur at the cellular level, and the properties and mechanisms of action of interferons.
Poxviruses are brick or oval-shaped viruses with large double-stranded DNA genomes. Poxviruses exist throughout the world and cause disease in humans and many other types of animals. Poxvirus infections typically result in the formation of lesions, skin nodules, or disseminated rash.
The document discusses superficial mycoses, which are fungal infections confined to the outer layer of the skin. It describes four types: pityriasis versicolor caused by Malassezia furfur presenting as discolored patches; tinea nigra caused by Exophiala werneckii appearing as brown-black palmar lesions; black piedra caused by Piedraia hortae forming hard nodules on hair; and white piedra caused by Trichosporon beigelli producing a soft white growth on hair. Diagnosis involves potassium hydroxide preparation of skin or hair samples or fungal culture. Treatment consists of topical antifungals like imidazoles or
This document discusses laboratory diagnosis of viral infections through three main approaches: direct detection of viruses, virus isolation, and serology. Direct detection methods include electron microscopy, antigen detection tests, and molecular methods like PCR. Virus isolation involves inoculating samples into cell cultures or animals to detect viral growth. Serology detects antibodies to viruses through techniques like immunofluorescence, ELISA, and western blot. Each method has advantages and limitations for diagnosing different types of viral infections.
Laboratory diagnosis of_infectious_diseasesShilpa k
This document summarizes the diagnostic cycle for infectious diseases and provides guidelines for collecting and transporting various specimen types, including blood, respiratory samples, urine, wounds, and stool. It describes the pre-analytical, analytical, and post-analytical phases of diagnosis and outlines optimal practices for collecting, transporting, and processing samples to accurately identify pathogens and inform treatment. Key steps include using appropriate collection methods and containers, maintaining sample integrity during transport, and rejecting samples that do not meet criteria.
1) Making an accurate diagnosis allows for better patient care through appropriate antibiotic use and prevention measures, while also reducing expenses.
2) Proper specimen collection and transport is crucial to protect samples from contamination and select the correct media for identification of infectious agents.
3) There are five main approaches to identifying infectious agents - staining techniques, immune detection methods, culture-based techniques, antigen detection assays, and nucleic acid-based methods like PCR.
Oncogenic viruses are viruses that can cause cancer. They do this by inducing genetic changes that alter the expression or function of proteins involved in controlling cell growth and division. There are RNA viruses and DNA viruses that are oncogenic. Retroviruses are a type of RNA virus that contain the enzyme reverse transcriptase and can integrate near proto-oncogenes, activating their expression. DNA viruses like papillomavirus and polyomavirus can contain oncogenes that encode transforming proteins to stimulate tumor formation. Many viruses are associated with specific types of cancer in animals and humans.
This document discusses bacteriological culture media used for the cultivation of microbes. It defines culture and cultivation as the process of allowing bacteria to multiply in an artificial environment providing optimal nutrients. Culture media refers to the artificial foods used for bacterial growth. The document outlines different types of culture media including solid, liquid, and semi-solid varieties. It also describes classification of bacteria based on their ability to be cultured, such as ordinary, fastidious, and unculturable bacteria. The key components, uses, and characteristics of different culture media are summarized.
Papovaviruses are a family of small, non-enveloped viruses with circular double-stranded DNA genomes. The family includes the genera Papillomavirus and Polyomavirus. Papillomaviruses can cause warts and some strains are associated with cancers like cervical cancer. Polyomaviruses can cause diseases in immunocompromised individuals like progressive multifocal leukoencephalopathy. Both viruses establish latent, lifelong infections and have oncogenic properties through viral proteins that interact with host cell growth regulators.
The document summarizes information about Hepatitis B virus (HBV). It discusses:
1. The discovery of HBV in 1965 and its classification in the Hepadnaviridae family.
2. HBV's morphology as a 42nm DNA virus with an outer envelope and inner core. It expresses surface, core, and e antigens.
3. HBV transmission occurs through bodily fluids and is most common in areas with large carrier populations like China and India. Carriers can be super carriers with high infectivity or simple carriers.
The document discusses BK polyomavirus, which is a double-stranded DNA virus that can cause BK virus nephropathy (BKVN) in transplant recipients. It is transmitted through multiple routes and reactivates due to immunosuppression after transplantation. BKVN diagnosis involves detecting viral DNA in plasma/urine and identifying viral inclusions on allograft biopsy. While prevention is important, no treatment has proven fully effective against established BKVN. Common approaches include decreasing immunosuppression and off-label use of antivirals like cidofovir or IV immunoglobulin.
This document provides an overview of general virology including:
- Viruses are obligate intracellular parasites that use host cell machinery for replication and lack cellular organization. They contain nucleic acid and a capsid or nucleocapsid.
- Viruses have icosahedral or helical capsid symmetry and some have envelopes. They carry out enzymatic activities like reverse transcriptase.
- Viruses are classified based on nucleic acid type, presence of envelope, size, route of transmission. Examples include adenoviruses, herpesviruses, influenza, HIV.
- The viral replication cycle involves adsorption, penetration, uncoating, replication, assembly and release. Different strategies are used
Proteus is a gram-negative bacteria commonly found in the gut that can cause urinary tract infections. It is motile due to flagella and has a fishy odor. P. mirabilis and P. vulgaris are medically important species, with P. mirabilis causing most UTIs through production of urease which hydrolyzes urea to ammonia, raising urine pH. Symptoms include urethritis, cystitis and pyelonephritis. It is identified in culture through swarming motility and biochemical tests. Virulence factors include urease, hemolytic toxins, and motility. Treatment involves antibiotics like beta-lactams, aminoglycosides and fluor
Adenoviruses are common pathogens that infect humans and animals. Over 100 serotypes have been identified that infect humans, causing respiratory illness, conjunctivitis, and gastroenteritis. Adenoviruses are non-enveloped viruses containing double-stranded DNA. The virus attaches and enters cells using cellular receptors and integrins, and undergoes replication in the nucleus. New viral particles are assembled and released through cell lysis to infect other cells. Symptoms vary depending on serotype and site of infection.
This document discusses various techniques for diagnosing and studying viruses in a laboratory setting. It describes growing viruses in cell cultures and embryonated eggs, observing cytopathic effects, and quantifying viruses using plaque assays, particle counting, and hemagglutination assays. It also covers transforming infected cells to develop continuous cell lines and detecting viral proteins and antibodies using techniques like western blotting. The goal is to isolate, propagate, quantify, and identify viruses for research and clinical diagnosis.
Interpretation of Hepatitis B Serologic Test Resultsru5dy
With the Laboratory Results you need to have interpretation of the patients who have check their blood for Hepatitis B test. This slide will guide you through how to interpretation of Hepatitis B Test Laboratory Results.
LABORATORY DIAGNOSIS OF VIRAL INFECTIONS.pdfWani Insha
Laboratory diagnosis of viral infections is useful for the following purposes:
To start antiviral drugs for those viral infections for which specific drugs are available such as herpes, CMV, HIV, influenza and respiratory syncytial virus (RSV)
Screening of blood donors for HIV, hepatitis B and hepatitis C-helps in prevention of transfusion transmitted infections
Surveillance purpose: To assess the disease burden in the community by estimating the prevalence and incidence of viral infections
For outbreak or epidemic investigation, e.g. influenza epidemics, dengue outbreaks-to initiate appropriate control measures
To start post-exposure prophylaxis of antiretroviral drugs to the health care workers following needle stick injury.
To initiate certain measures: For example,
If rubella is diagnosed in the first trimester of pregnancy, termination of pregnancy is recommended
If newborn is diagnosed to have hepatitis B infection, then immunoglobulins (HBIG) should be started within 12 hours of birth.
Report of recent microbial techniques developed in diagnosing some common dis...SATYAM PANDEY
This document summarizes several common diseases and their microbial diagnosis techniques. It discusses typhoid, tuberculosis, malaria, cholera, hepatitis, meningitis, syphilis and gonorrhea. For each disease, it describes the causative organism, traditional diagnosis methods like culture and microscopy, and newer techniques such as immunoassays, PCR and nucleic acid amplification tests that provide faster and more accurate detection of pathogens.
Viruses are the smallest infectious agents that can only be seen using an electron microscope. They are obligatory intracellular parasites that contain either DNA or RNA, not both. Viruses are diagnosed through direct detection of the virus or its components using techniques like electron microscopy, immunoassays, and PCR. Indirect methods include serological diagnosis by detecting antibodies and skin tests. Viruses are cultivated inside living cells in tissue culture or laboratory animals since they cannot grow on artificial media.
This document discusses various methods for diagnosing viral infections, including direct staining, enzyme immunoassays, viral cell culture, and molecular amplification. Direct staining of lesion specimens can identify herpes simplex virus and varicella zoster virus using fluorescent antibodies. Enzyme immunoassays are rapid tests used to detect non-culturable viruses like rotavirus. Viral cell culture involves inoculating patient specimens onto cell monolayers to detect cytopathic effects indicating viral growth. Molecular amplification is now the standard method for detecting many viruses from specimens.
Virology 2024 | Microbes with Morgan 2024Margie Morgan
Margie Morgan discusses laboratory methods for detecting common viral pathogens. Specimens suspected of routine viral infections can be processed with BSL-2 precautions. Detection methods discussed include direct fluorescent antibody staining, enzyme immunoassays, viral cell culture, and molecular amplification. Viral cell culture involves inoculating specimens onto cell monolayers and observing for cytopathic effects. Molecular amplification is now the standard method for detecting most viruses.
This document summarizes cryptococcal meningitis, a fungal infection of the membranes surrounding the brain and spinal cord that is common in people with HIV/AIDS. It describes the causative organism, Cryptococcus neoformans, and outlines the clinical presentation, diagnosis, and treatment of cryptococcal meningitis. The treatment involves amphotericin B and flucytosine initially, followed by long-term fluconazole therapy and antiretroviral treatment once the patient's CD4 count recovers. Prevention strategies include screening high-risk HIV patients and treating asymptomatic cryptococcal infections before starting antiretroviral therapy.
Cytomegalovirus infection in kidny transplantationhadi lashini
HCMV infection is a frequent complication of kidney transplantation, especially in the period 1 to 4 months after transplantation. Overall incidences of HCMV infection and disease during the first 100 days post-transplantation, 60% and 25% respectively, when no HCMV prophylaxis or pre-emptive therapy is given. HCMV infection is an independent risk-factor for kidney graft rejection and associated with high morbidity and mortality rates .
The document provides a history of important discoveries in virology from 1796 to the present. Some key points include:
- Edward Jenner performed the first vaccination against smallpox in 1796 using cowpox.
- Louis Pasteur experimented with rabies vaccination in 1885 and coined the term "virus".
- In 1892, Dmitri Iwanowski described the tobacco mosaic virus, the first "filterable" infectious agent smaller than bacteria.
- In the early 1900s, viruses were shown to infect humans, animals, plants and be transmitted by insects or cause diseases like polio, yellow fever and cancer.
- Advances in electron microscopy, molecular cloning and PCR allowed direct visualization
The document provides a history of important discoveries in virology from 1796 to 1989. Some key developments include Edward Jenner using cowpox to create the first vaccine for smallpox in 1796, Louis Pasteur experimenting with rabies vaccination and coining the term "virus" in 1885, the first direct visualization of virus particles using electron microscopy by Ruska in 1940, and the identification of hepatitis C virus by molecular cloning in 1989. The document also discusses techniques for laboratory diagnosis of viral infections including direct examination, virus culture, and serology.
1. The document discusses various methods for diagnosing viral infections, including direct fluorescent antibody staining, enzyme immunoassays, viral cell culture, and molecular amplification techniques like PCR.
2. Specific examples of viruses that can be diagnosed using these methods are provided, such as herpes simplex virus, varicella zoster virus, cytomegalovirus, Epstein-Barr virus, and adenovirus.
3. Details are provided on specimen collection and storage, as well as the cytopathic effects and characteristics of each virus in cell culture systems.
1. The document describes several methods for diagnosing viral infections including direct fluorescent antibody staining, enzyme immunoassays, viral cell culture, and molecular amplification.
2. It provides details on specific viruses that can be diagnosed by each method, such as herpes simplex virus diagnosed using direct fluorescent antibody staining or molecular amplification from lesions.
3. The document also summarizes the clinical presentation and diagnosis of several important human viruses including herpes simplex virus, varicella zoster virus, Epstein-Barr virus, cytomegalovirus, hepatitis viruses, adenovirus, and parvovirus B19.
Serology tests look for antibodies in a person's blood that were produced as part of an immune response to a pathogen like SARS-CoV-2. These tests can determine if a person has been previously infected but not if they are currently infected. There are several types of serology tests that differ in testing time and whether they provide qualitative or quantitative results or measure antibody function. RT-PCR is commonly used to detect if the SARS-CoV-2 virus is present by extracting RNA from a sample, converting it to DNA, and amplifying any viral DNA through repeated heating and cooling cycles. Rapid antigen tests can also detect active infection by identifying SARS-CoV-2 antigens but are less sensitive than RT-PCR.
This document provides information on viral diagnosis methods. It discusses:
1. Direct examination methods like antigen detection, electron microscopy, and PCR to detect viruses.
2. Indirect examination using cell culture, eggs, or animals to isolate and identify viruses. Cytopathic effects and immunofluorescence are used to detect growth.
3. Serology methods like ELISA, complement fixation, and neutralization to detect antibodies produced in response to viral infection. Rising titers indicate acute infection while IgM indicates primary infection.
This document provides information on various methods for diagnosing viral infections, including direct fluorescent antibody staining, enzyme immunoassays, viral cell culture, and molecular amplification. It discusses specific viruses that can be diagnosed by each method and highlights characteristics of notable DNA and RNA viruses like herpes simplex virus, varicella zoster virus, cytomegalovirus, Epstein-Barr virus, adenovirus, parvovirus B19, human papillomavirus, JC and BK polyomaviruses, hepatitis B and C viruses. Diagnostic findings on cell culture, histopathology, and serology are also summarized for several viruses.
This document discusses various approaches for the identification of infectious agents from clinical specimens, including microscopy, culture, antigen and antibody detection, and nucleic acid-based methods. Specimen collection and transport are important to prevent contamination. Identification approaches include staining techniques like Gram stain and acid-fast stain, as well as newer stains. Serology can detect specific antibodies or antigens. Nucleic acid amplification methods like PCR can detect very small quantities of pathogens and are used to identify slow-growing or difficult-to-culture organisms. Molecular methods provide sensitive detection but require precautions to avoid false results from contamination or low pathogen levels.
This document provides an overview of virological tests for virus detection and diagnosis. There are three main categories of tests: direct examination to detect viral antigens or genomes, indirect examination using cell culture or animals to isolate viruses, and serology to detect antibodies. Direct methods include antigen detection by immunofluorescence, electron microscopy, PCR and hybridization probes. Indirect methods involve culturing viruses in cell lines or eggs and observing cytopathic effects or hemagglutination. Serology detects rising antibody titers between acute and convalescent patient samples or presence of IgM. Newer molecular techniques like PCR have increased sensitivity but require skill and specialized equipment. Proper specimen collection and a combination of direct, culture and serology tests
This document provides an overview of HIV/AIDS, including its types, epidemiology, structure and life cycle, transmission, diagnosis, stages of infection, and treatment. It describes how HIV infects and destroys CD4 cells, progressively weakening the immune system until opportunistic infections define AIDS. Laboratory tests for diagnosis include antibody and viral detection assays, with CD4 counts and viral load used to monitor disease progression and response to antiretroviral therapy.
This document outlines the diagnostic approach and laboratory tests for evaluating a patient presenting with pyrexia of unknown origin (PUO). It describes collecting relevant clinical history and performing a physical exam. Specimens including blood, urine, sputum, CSF and tissues may be obtained for bacterial, viral, parasitic and fungal cultures and stains. Tests like blood cultures, urine cultures, sputum smears and cultures, and CSF analysis can help identify potential infectious causes. Serology, skin tests, hematology, immunology and biopsy may also provide diagnostic clues. Empiric antibiotic therapy is guided by risk factors and test results.
This document provides an overview of several human herpesviruses:
1. It discusses Epstein-Barr virus (EBV), including its definition, pathogenesis, diseases associated with it like infectious mononucleosis and Burkitt's lymphoma, and methods of diagnosis and prevention.
2. It also covers cytomegalovirus (CMV), discussing its definition, pathogenesis in normal and immunocompromised hosts as well as congenitally, diseases it causes, diagnostic tests, treatment and prevention.
3. Finally, it briefly outlines human herpes viruses 6, 7 and 8; their associations with roseola infantum, Kaposi's sarcoma; and diagnostic methods.
This document summarizes various methods for diagnosing tuberculosis (TB) including:
1. Radiographic examination of the chest to identify features of primary or reactivated TB.
2. Laboratory tests like smear microscopy, culture and nucleic acid amplification to detect Mycobacterium tuberculosis from respiratory or other specimens.
3. Immunological tests like tuberculin skin test, interferon-gamma release assays and serological tests to detect TB infection.
Similar to lab diagnosis of viral infections - mayuri.pptx (20)
ANTIGEN- SECTION IMMUNOLOGY DEPARTMENT OF MICROBIOLOGYDrmayuribhise
Defined as any substance that satisfies two distinct immunologic properties-
Immunogenicity
Antigenicity.
Immunogenicity:Ability of an antigen to combine specifically with the final products antibodies and/or T cell-surface receptors.
All molecules having immunogenicity property, also show antigenicity, but the reverse is not true
E.g. Haptens- which are antigenic but not immunogenic.
Ability of an antigen to induce immune response in the body (both humoral and/or cell mediated).
B cells + antigen → effector B cells (plasma cell) + memory B cells
T cells + antigen → effector T cells (helper T cell or cytotoxic T cell) + memory T cells
Substance that satisfies immunogenicity - more appropriately called as ‘immunogen’ rather than ‘antigen’. Smallest unit of antigenicity.
Definition - Small area present on the antigen comprising of few (four to five) amino acids or monosaccharide residues, that is capable of sensitizing T and B cells and reacting with specific site of T cell receptor or an antibody.
Specific site of an antibody that reacts with the corresponding epitope of an antigen is called as paratope.
Types of epitope:
Sequential or linear epitope- Present as a single linear sequence of few amino acid residues.
Sequential or linear epitope- Present as a single linear sequence of few amino acid residues.
Conformational or non sequential epitopes:
Found on the flexible region of complex antigens having tertiary structures.
Formed by bringing together the surface residues from different sites of the peptide chain during its folding into tertiary structure.
Low molecular weight molecules that lack immunogenicity (cannot induce immune response) but retain antigenicity or immunological reactivity (i.e. can bind to their specific antibody or T cell receptor).
Haptens can become immunogenic when combined with a larger protein molecule called carrier.
Classification:
Complex haptens - contain two or more epitopes.
Simple haptens - contain only one epitope
Based on the antigen-host relationship, antigens can be grouped into two groups:
Self or auto antigens
Non-self or foreign antigens
Belong to the host itself - not immunogenic.
Hosts do not react to their own antigens by exhibiting a mechanism called immunological tolerance.
Sometimes, the self-antigens are biologically altered (e.g. as in cancer cells) and can become immunogenic.
Immunogenic and are of three types based on their phylogenetic distance to the host.
Alloantigens
Isoantigens ---Blood group — Human erythrocyte antigen
Histocompatibility antigen — Transplantation
Heteroantigens
Type of Heteroantigens that are present in two different species; but they share epitopes with each other.
Antibody produced against antigen of one species can react with the other and vice versa.
Heterophile antigens can be used in various serological tests.
Antibody against one antigen can be detected in patient’s serum by employing a different antigen which is heterophile (cross reactive) to th
8 august FUNGAL INFECTIONS OF RESPIRATORY TRACT.pptxDrmayuribhise
Opportunistic fungal agents: Major fungal agents cause respiratory infections
Pneumocystis jirovecii pneumonia
Zygomycoses
Aspergillosis
Penicillosis.
Fungi causing systemic mycoses:
Blastomyces dermatitidis
Histoplasma capsulatum
Paracoccidioides brasiliensis
Coccidioides immitis.
Yeast: Cryptococcus neoformans
Recently, the taxonomy of Pneumocystis has been changed (2002).
Once thought to be a protozoan, now under fungus based on nucleic acid sequence studies.
Taxonomists renamed the human species of Pneumocystis as Pneumocystis jirovecii.
Two known species: P. carinii & P. jirovecii
Pneumocystis pneumonia is one of the common opportunistic infections in AIDS
Pneumocystis exists in cyst and trophozoite forms. The
Cysts - found in the environment; in human tissues, both cysts and trophozoites (containing 4–8 sporozoites) are found.
Once inhaled, the cysts are carried to – the lungs - transform into trophozoite
Trophozoites induce - inflammatory response – recruitment of plasma cells -frothy exudate - also called plasma cell pneumonia
Infection is transmitted by respiratory droplets
In immunocompetent individuals: Asymptomatic
In immunocompromised patients: Fatal pneumonia
Specimens: Induced sputum, BAL or lung biopsy
Microscopy
Trophozoites can be demonstrated by Giemsa, toluidine blue, Grocott’s methenamine silver stain
The cyst wall stains black with methenamine silver stain
The organism cannot be cultured
Serology
Complement fixation test & Latex agglutination test
Histopathological examination of lung tissue - reveals cysts.
Gomori’s methenamine silver (GMS) staining method-demonstrate the cysts of P. jirovecii.
Cysts – black-colored crushed ping-pong balls against the green background
Histopathological examination of lung tissue - reveals cysts.
Gomori’s methenamine silver (GMS) staining method-demonstrate the cysts of P. jirovecii.
Cysts – black-colored crushed ping-pong balls against the green background
Histopathological examination of lung tissue - reveals cysts.
Gomori’s methenamine silver (GMS) staining method-demonstrate the cysts of P. jirovecii.
Cysts – black-colored crushed ping-pong balls against the green background
Radiology: Chest X-ray - classical finding of bilateral diffuse infiltrates.
CT of the lung - ground-glass opacities at the early stage.
Atypical manifestations - nodular densities, cavitary lesions
PCR - developed for detection of P. jirovecii specific genes
Detection of 1, 3 β-D-glucan in serum
Cotrimoxazole (trimethoprim/sulfamethoxazole) - drug of choice for Pneumocystis pneumonia.
Given for 14 days in non-HIV patients and 21 days in patients with HIV.
Also the recommended drug for primary and secondary prophylaxis in patients with HIV
Life-threatening infections caused by aseptate fungi belonging to the phylum Zygomycota
1. Order Mucorales (causes mucormycosis)
Rhizopus (R. arrhizus and R. microsporus)
Mucor racemosus, Rhizomucor pucillus
Lichtheimia corymbifera , Apophysomyces elegans
2. Order ento
Polioviruses cause a highly infectious childhood disease - polio (or poliomyelitis) causing acute flaccid paralysis - involvement of nervous system.
Polio is in the verge of eradication globally.
Group: Group IV (ssRNA)
Family: Picornaviridae
Genus: Enterovirus
Species: Poliovirus
Simple in structure, very small (28–30 nm size) , non-enveloped
Spherical shaped and have icosahedral symmetry
Capsid is composed of 60 subunits, each consisting of four viral proteins (VP1-VP4), except parechoviruses (have three proteins).
Possess single stranded positive sense linear RNA
3 types
Type 1 (Brunhilde/Mahoney): mostly causes outbreaks
Type 2 (Lansing/MEF1): easiest to eradicate
Type 3 (Leon/Sankett): often last to be eradicated
Highly contagious (usually infects 100% of all susceptibles)
Occurs worldwide and is seasonal
Inapparent to apparent infection ratio = 200-1000:1
Polioviruses - classified into wild polioviruses - cause natural disease
Vaccine derived poliovirus (VDPV) - vaccine strains that have regained neurovirulence and are capable of producing disease in man
There are three wild poliovirus strains: Wild poliovirus type 1 (WPV1), wild poliovirus type 2 (WPV2) and wild poliovirus type 3 (WPV3).
All three strains are identical, produce similar manifestations and severity of illness.
They are genetically and immunologically distinct; differ from each other in VP1 region.
Antibody response is type-specific and not cross-protective.
Currently all the natural cases - caused by WPV1.
Both WPV2 and WPV3 - globally eradicated, in the years 1999 and 2019 respectively
Age – most vulnerable 6 months to 3 years
Sex – 3 males:1 female
Risk Factors – Fatigue, trauma, IM injections, tonsillectomy, alum containing DPT
Active
through immunization / natural infection
immunity believed to be lifelong
immunity to one type not protective against infection with other types
two types of immunity: intestinal and humoral
Passive
infants born to mothers with high antibody protected for first several weeks
Virus intermittently excreted for 6-8 weeks after infection
Most heavy excretion
just prior to paralysis onset
up to first two weeks
dramatically tapers off after 4 weeksShort incubation period
usually 7-14 days,
but may be a short as 4 days
(range 3-35 days)
Virus enters oral cavity
Local replication in tissues expressing receptor (tonsils, intestinal M cells, Peyer patches of ileum, and lymph nodes)
Viremia with hematologic spread to CNS
Retrograde spread along neurons to spinal cord
Motor neurons destroyed by viral replication
Paralysis extent depends on proportion of motor neurons lost
Transmission: Feco-oral route (most common), or rarely by respiratory droplets via inhalation or conjunctival contact.
Multiply locally- Intestinal epithelial cells, sub mucosal lymphoid tissues, of tonsils and Peyer's patches.
Receptor- Viral entry into the host cells - mediated by binding to CD155 receptors present on the host cell Hematogenous spread (most commo
Pharyngitis (or sore throat) - most common upper respiratory tract infections (URTI).
Viral pharyngitis - vast majority of cases – self-limited.
Bacteria - important etiologic agents of pharyngitis, require specific antibiotic treatment - can lead to serious complications and sequelae
Streptococcus pyogenes
Corynebacterium diphtheriae
Rare causes
Other β-hemolytic streptococci (group C and G)
Arcanobacterium hemolyticum
Fusobacterium necrophorum
Mycoplasma pneumoniae
Neisseria gonorrhoeae
Size – 0.5-1 m.
Shape – oval /elliptical.
Arrangement – in chains esp. in liquid culture media. (upto 50 cocci in a chain).
Divide in one plane.
Daughter cells do not seperate.
Gram positive
Cultures older than log phase may lose gram reaction.
Capsule –
Hyaluronic acid (group A, C). Nonimmunogenic.
Polysaccharide (group B, D ).
Nonmotile.
Nonsporing.
L-forms – cell-wall deficient, require thiol & pyridoxal for growth. Found in blood (due to antibiotics).
Aerobes & facultative anaerobes.
22-42°C; opt.37.
pH for growth –opt. 7.4.
Capnophilic – 10% CO2.
Fastidious; need blood / serum / sugar.
Liquid medium (e.g. Todd-Hewitt broth) – granular turbidity + powdery deposits.
Blood agar –
0.5-1mm, circular, low convex, -hemolytic.
Matt colonies – pathogenic
Glossy colonies – nonpathogenic.
Selective medium –
Crystal violet (1:500,000) in B.A.
Catalase – ve
Sugar fermentation –
Glucose, lactose, maltose, trehalose - . (constitutive enzymes).
Other sugars & alcohols - ,(inducible enz.).
*Ribose sugars – not fermented.
*Pyrolidonyl naphthalamide hydrolysis (PYR) - +ve (differentiates gr. A from other groups).
Delicate organism
Survives in dust in dark for many weeks.
Susceptible to heat , 54°C x 30 min.
Susceptible to common antiseptics.
Resistant to –
Crystal violet (1mg/litre) – for isolation of gr A.
Nalidixic acid (15mg/litre) for isolation of & Colistin (10mg/litre) gr. B
Bacitracin sensitive – differentiates gr. A from other hemolytic
Hyaluronic acid capsule-nonantigenic, antiphagocytic, thrombolytic.
Innermost cell wall layer peptidoglycan (NAG-NAM)
Cell-wall CHO – Group sp. Ag. Todd-Hewit growth →
Extraction by –
HCl (Lancefield)
Formamide (Fuller)
Enzyme of Streptomyces albus (Maxted)
Autoclave (Rantz & Randall).
Capillary pptn /ring pptn
M protein –
Acid extraction & Serotyping.
100 M-types.
T protein –
Typing by slide agglutination with trypsinised RBCs.
R protein –
Present in gr. B, C, G & some serotypes of gr. A (23, 28, 48).
. Antigenic cross-reactions
Capsular hyaluronic acid synovial fluid.
Cellwall CHO cardiac valves.
Cellwall peptidoglycan skin.
Cyto. membrane vascular intima & cardiac muscle.
M protein* - reqd. for invasive infection.
Receptor for fibrinogen, factor H, IgG.
Capsule - antiphagocytic
Group CHO Ag’-invasive properties.
Protein F- binds fibronectin on epi. Surface
Lipoteichoic acid loosely binds strepto’ to epi surface. F prtn, M prtn secur
For decades microbes, in particular bacteria, have become increasingly resistant to various antimicrobials.
The World Health Assembly’s endorsement of the Global Action Plan on Antimicrobial Resistance (AMR) in May 2015, and the Political Declaration of the High-Level Meeting of the General Assembly on AMR in September 2017, both recognize AMR as a global threat to public health.
These policy initiatives acknowledge overuse and misuse of antimicrobials as a main driver for development of resistance, as well as a need to optimize the use of antimicrobials.
The Global Action Plan on AMR sets out five strategic objectives as a blueprint for countries in developing national action plans (NAPs) on AMR:
Objective 1: Improve awareness and understanding of AMR through effective communication, education and training.
Objective 2: Strengthen the knowledge and evidence base through surveillance and research.
Objective 3: Reduce the incidence of infection through effective sanitation, hygiene and infection prevention measures.
Objective 4: Optimize the use of antimicrobial medicines in human and animal health.
Objective 5: Develop the economic case for sustainable investment that takes account of the needs of all countries, and increase investment in new medicines, diagnostic tools, vaccines and other interventions.
Antimicrobial stewardship programmes optimize the use of antimicrobials, improve patient outcomes, reduce AMR and health-care-associated infections, and save health-care costs amongst others.
Today, AMS is one of three “pillars” of an integrated approach to health systems strengthening. The other two are infection prevention and control (IPC) and medicine and patient safety.
Linking all three pillars to other key components of infection management and health systems strengthening, such as AMR surveillance and adequate supply of quality assured medicines, promotes equitable and quality health care towards the goal of achieving universal health coverage
CDC has defined “Antimicrobial stewardship” as-
The right antibiotic
for the right patient,
at the right time,
with the right dose, and
the right route, causing
the least harm to the patient and future patients
Why AMSP is needed?
Antimicrobial Resistance (AMR)
Misuse and Over-use of Antimicrobials
Widespread Use of Antimicrobials in Other Sectors
Poor Antimicrobial Research
IMPLEMENTATION OF ANTIMICROBIAL STEWARDSHIP PROGRAM
Administrative Support (Leadership)
Formulating AMS Team
Infrastructure Support
Framing Antimicrobial Policy
Implementing AMS strategies
Education and Training
Should be publicly committed to the program.
Provide necessary funding and infrastructure support.
Multidisciplinary committee - responsible for framing, implementing and monitoring the compliance to antimicrobial policy of the hospital.
Led by the antimicrobial steward - infectious disease physician or infection control officer or clinical microbiologist.
Other members of AMS team - stewardship nurses
Dr Mayuri -Water surveillance (Practical).pptxDrmayuribhise
Coliforms ( other than
E.coli)
Fecal (thermo tolerant)
E.coli
Fecal streptococci
Sulphite reducing
clostridia
Pseudomonas aeruginosa
Bacteriophages specific for E.coli
Container- Screw capped borosilicate glass or plastic bottles (500 ml)
Avoid contamination
Volume- At least 150-200 ml of water
For testing dialysis water
For testing clean water
For testing large volume of water
When bacterial count in water is expected to be low
F o r t h e e s t i m a t i o n o f presumptive coliform count
Extensively used for drinking water analysis
For highly turbid samples
F o r t h e e s t i m a t i o n o f presumptive coliform count
Extensively used for drinking water analysis
For highly turbid samples
To confirm that the coliform bacilli detected in presumptive test are faecal E.coli
Inoculate the positive tubes into brilliant green bile broth and tryptone water. Incubate at 44°C for 24 hours
Positive for indole, acid, and gas production confirms thermotolerant E. coli
Filtration of known volume of water sample on cellulose filter paper and incubate it on suitable culture media.
Pore size = 0.2-0.45 μm
Media : Membrane lauryl sulphate broth
Drinking-water supply surveillance is “the continuous and vigilant public health assessment and review of the safety and acceptability of drinking-water supplies” (WHO, 1976). This surveillance contributes to the protection of public health by promoting improvement of the quality, quantity, accessibility, coverage, affordability and continuity of water supplies (known as service indicators) and is complementary to the quality control function of the drinking-water supplier. Drinking-water supply surveillance does not remove or replace the responsibility of the drinking-water supplier to ensure that a drinking-water supply is of acceptable quality and meets predetermined health-based targets
All members of the population receive drinking-water by some means—including the use of piped supplies with or without treatment and with or without pumping (supplied via domestic connection or public standpipe), delivery by tanker truck or carriage by beasts of burden or collection from groundwater sources (springs or wells) or surface sources (lakes, rivers and streams). It is important for the surveillance agency to build up a picture of the frequency of use of the different types of supply, especially as a preliminary step in the planning of a surveillance programme. There is little to be gained from surveillance of piped water supplies alone if these are available to only a small proportion of the population or if they represent a minority of supplies.
Information alone does not lead to improvement. Instead, the effective management and use of the information generated by surveillance make possible the rational improvement of water supplies—where “rational” implies that available resources are used for maximum public health benefit.
Surveillance is an important element in the development of strategies for in
Smallest known DNA viruses.
Structure
Non-enveloped
18-26 nm diameter
Single-stranded DNA, 5.6 kb
Icosahedral
Parvovirinae (vertebrates)
Parvovirus
Erythrovirus
Dependovirus (requires helper virus, such as an adenovirus)
Bocavirus
Amdovirus
Densovirinae (invertebrates)`
B19 virus most common.
Diseases
Erythema infectiosum (cutaneous rash)
Polyarthropathy syndrome (acute or chronic)
Transient aplastic crisis (severe acute anemia)
Pure red cell aplasia (chronic anemia)
Hydrops fetalis (fetal anemia)
Simplest animal viruses infecting humans, responsible for - childhood exanthema - erythema infectiosum (fifth disease).
Smallest viruses (18–26 nm size)
Non-enveloped with icosahedral symmetry
Only DNA viruses - possess single-stranded DNA
Depend upon the host cell enzymes for replication
Transmission - Respiratory route, followed by blood transfusion and transplacental route.
Infects precursors of RBCs: Parvovirus B19 has a special tropism for erythroid progenitor cells present in adult bone marrow and foetal liver as it binds to blood group P antigen as receptors; which are present on the RBC surface.
This results in red cell destruction and inhibition of erythropoiesis
Erythema infectiosum (or fifth disease)
Transient aplastic crisis
Pure red cell aplasia
Non-immune hydrops fetalis
Papular-purpuric gloves and socks syndrome
Known to cause foetal loss through hydrops fetalis; severe anaemia, congestive heart failure, generalized oedema and foetal death
No evidence of teratogenicity.
Risk of foetal death highest when infection occurs during the second trimester of pregnancy (12%).
Molecular methods:
PCR - detects viral DNA (e.g. genes coding for VP1 and VP2) from serum, tissue or respiratory secretions.
Real time PCR - used for quantification of viral load in blood, during acute infections
Antibody detection: ELISA – detecting antibodies against VP1 and VP2 antigens. IgM appears early - recent infection and remains elevated for 2–3 months
Antigen detection: Immunohistochemistry - detect viral antigens in fetal tissues and bone marrow.
No antiviral drug is available
Symptomatic treatment is given
Immunoglobulins containing neutralizing antibodies to human parvovirus are available commercially
No antiviral drug is available
Symptomatic treatment is given
Immunoglobulins containing neutralizing antibodies to human parvovirus are available commercially
Measles is an acute, highly contagious childhood disease characterized by fever & respiratory symptoms, followed by typical maculopapular rash.
Transmission
Droplets inhalation over short distances and, less commonly,
Small-particle aerosols - remain suspended especially in schools, hospitals, and enclosed public places in the air for longer period.
Spread-The virus multiplies locally in the respiratory tract; then spreads to the regional lymph nodes → enter into the bloodstream in infected monocytes (primary viremia)→further multiply in reticuloendothelial system → spills over into blo
Vibrio cholera and Halophilic vibrio.pptDrmayuribhise
A 4-year-old boy developed severe watery diarrhea and vomiting. The stool collected has a rice water type of appearance. It was sent for bacteriological analysis.
a. What is the probable etiological diagnosis of this condition?
b. Describe in detail the pathogenesis of this condition.
c. Add a note on its laboratory diagnosis.
Which of the following media can be used as transport medium for vibrio?
a. Selenite F broth
b. Nutrient broth
c. Tetrathionate broth
d. Venkatraman–Ramakrishnan medium
All of the following tests can differentiate between classical and El Tor biotypes of V. cholerae, except:
a. β-hemolysis on sheep blood agar
b. Chick erythrocyte agglutination
c. Growth on TCBS agar
d. Polymyxin B (50 IU)
Pathogenesis of V. cholerae involves one of the following second messenger systems:
a. cGMP
b. cAMP
c. Ca2+
d. IP3
Selective media for Vibrio cholerae:
a. TCBS
b. Mannitol salt agar
c. Robertson cooked meat medium
d. Modified Thayer Martin medium
All of the following Vibrio species are halophilic, except:
a. V. cholerae
b. V. parahaemolyticus
c. V. alginolyticus
d. V. vulnificus
O139 (Bengal strain)—all are true, except:
a. Capsulated
b. Toxigenic
c. Clinically similar to El Tor
d. More common than El Tor
All are selective media for V. cholerae, except:
Alkaline peptone water
Alkaline bile salt agar
TCBS agar
Monsur’s agar (GTTTA) medium
Which of the following confirms the isolate of V. cholerae as Hikojima serotype?
a. If agglutinated with Ogawa antisera
b. If agglutinated with Inaba antisera
c. If agglutinated with Hikojima antisera
d. If agglutinated with both Ogawa and Inaba antisera
Gram negative
Rigid, curved rods
“Vibrio” – vibratory motility
Non - sporing
Non - capsulated
Present in marine environments & surface waters worldwide
1854 – observed by Pacini
1883 – first isolated by Koch
Vibrio cholerae Top
V. cholerae was first described as the cause of cholera by Pacini in 1854. Pathogenic V. cholerae
produces a heat-sensitive enterotoxin that causes the characteristic cholera symptoms, including
"rice water stool." The species comprises several somatic (O) antigen groups, including O-group1, which is associated with classical and El Tor biotypes. V. cholerae Ol may have several
serotypes, including Inaba, Ogawa, and Hikojima. V. cholerae non-O1 (referred to in older
literature as nonagglutinable or NAG vibrios) also can cause gastrointestinal disease, though
typically less severe than that caused by V. cholerae O1 (Yamamoto et al., 1983). Serotype O139
is an exception, and produces classic cholera symptoms. This serotype was first identified in
1992 (CWG, 1933) as the cause of a new epidemic of cholera in India and Bangladesh. Non-O1
V. cholerae is found more readily in estuarin! e waters and seafood in the United States than is
the Ol serogroup; however, the 0139 serogroup has not yet been found here. Because this species
can grow in media lacking sodium chloride, it is not considered a halophilic Vibr
R3 Stem Cell Therapy: A New Hope for Women with Ovarian FailureR3 Stem Cell
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Healthy Eating Habits:
Understanding Nutrition Labels: Teaches how to read and interpret food labels, focusing on serving sizes, calorie intake, and nutrients to limit or include.
Tips for Healthy Eating: Offers practical advice such as incorporating a variety of foods, practicing moderation, staying hydrated, and eating mindfully.
Benefits of Regular Exercise:
Physical Benefits: Discusses how exercise aids in weight management, muscle and bone health, cardiovascular health, and flexibility.
Mental Benefits: Explains the psychological advantages, including stress reduction, improved mood, and better sleep.
Tips for Staying Active:
Encourages consistency, variety in exercises, setting realistic goals, and finding enjoyable activities to maintain motivation.
Maintaining a Balanced Lifestyle:
Integrating Nutrition and Exercise: Suggests meal planning and incorporating physical activity into daily routines.
Monitoring Progress: Recommends tracking food intake and exercise, regular health check-ups, and provides tips for achieving balance, such as getting sufficient sleep, managing stress, and staying socially active.
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MBC Support Group for Black Women – Insights in Genetic Testing.pdfbkling
Christina Spears, breast cancer genetic counselor at the Ohio State University Comprehensive Cancer Center, joined us for the MBC Support Group for Black Women to discuss the importance of genetic testing in communities of color and answer pressing questions.
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DECODING THE RISKS - ALCOHOL, TOBACCO & DRUGS.pdfDr Rachana Gujar
Introduction: Substance use education is crucial due to its prevalence and societal impact.
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This particular slides consist of- what is hypotension,what are it's causes and it's effect on body, risk factors, symptoms,complications, diagnosis and role of physiotherapy in it.
This slide is very helpful for physiotherapy students and also for other medical and healthcare students.
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Hypotension, or low blood pressure, is when the pressure of blood circulating in the body is lower than normal or expected. It's only a problem if it negatively impacts the body and causes symptoms. Normal blood pressure is usually between 90/60 mmHg and 120/80 mmHg, but pressures below 90/60 are generally considered hypotensive.
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Let's Talk About It: Breast Cancer (What is Mindset and Does it Really Matter?)bkling
Your mindset is the way you make sense of the world around you. This lens influences the way you think, the way you feel, and how you might behave in certain situations. Let's talk about mindset myths that can get us into trouble and ways to cultivate a mindset to support your cancer survivorship in authentic ways. Let’s Talk About It!
TEST BANK FOR Health Assessment in Nursing 7th Edition by Weber Chapters 1 - ...rightmanforbloodline
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2. River’s Postulates
T.M. River, 1937
Modified from Koch’s Postulates (proof of bacterial
diseases)
1. Isolate virus from diseased hosts.
2. Cultivation of virus in host cells.
3. Proof of filterability.
4. Production of a comparable disease when the
cultivated virus is used to infect experimental
animals.
5. Reisolation of the same virus from the infected
experimental animal.
6. Detection of a specific immune response to the
virus.
3. Methods of Study
Much more expensive and
difficult to study animal
viruses than bacteriophages
Cultivation in host cells
Living animal
Embryonated chicken eggs
Cell or tissue culture (= in vitro)
4. Viral Diagnostics in the Clinical
Laboratory
Over 60% of all infectious disease
cases seen by a physician are due
to viral infections.
Quality of patient specimens and
their transport to the laboratory is
important.
5. Indications for lab diagnosis of
viral infection
5
• If rubella is diagnosed in the first trimester of pregnancy,
abortion is recommended
• If baby is diagnosed to have Hepatites B –Igs within 12 hrs of
birth
For proper
management of
certain diseases
• for which antiviral chemotherapy is available (herpes viruses)
Diagnosis of
diseases caused by
viruses
• For hepatitis B & HIV virus helps to prevent spread of these
viruses
Screening of blood
donors
• To initiate appropriate control measures
Early detection of
epidemics
6. Cont….
11/28/2022
Cristi Francis
6
To start post exposure prophylaxis of
antiretroviral drugs to health care workers
following needle stick injuries .
Survillance purpose- To asses the disease
burden in the community by calculating
prevalance and incidence of viral infections
7. Storage and Collection of Biological
Specimens for Viral Testing
Types of specimens:-
Respiratory tract infections: Nasal and bronchial washings, throat and
nasal swabs, sputum
Eye infections: throat and Conjunctival swab/scraping
Gastrointestinal tract infections: stool and rectal swabs
Vesicular rash: vesicle fluid, skin scrapings
Maculopapular rash: throat, stool, and rectal swabs
CNS (encephalitis and meningitis cases): stool, tissue, saliva, brain
biopsy, cerebrospinal fluid
Genital infections: vesicle fluid or swab
Urinary tract infections: urine
Blood borne infections: blood
8. TRANSPORT AND STORAGE OF SPECIMENS
8
Sterile, leak proof container
Minimal interval
Transport media
Viral infusion broth (VIB)
Sucrose-phosphate-glutamate (SPG)
Storage temperature:
4 deg C for up to 96 hours
Minus 70 deg C beyond 96 hours
Repeated cycles of freezing and thawing to be
avoided
9. General approaches for Laboratory diagnosis of Viral
infections
Direct demonstration of
virus ,viral Ags or viral
genome
Isolation of virus
Detection of specific viral
antibodies
11/28/2022 Cristi Francis 9
10. Direct Demonstration of virus
• Examine specimen for viruses
Electron Microscope
• Labeled antibody
Immuno-electron
microscopy
• Fluorescent tag bound to Fc region of Ab
Immunofluorescence
• Histological appearance of affected cells
(Immunoperoxidase staining)
• Inclusion bodies
Light microscope
11/28/2022 Cristi Francis 10
11. 1) Electron Microscopy
11
106 virus particles per ml required for visualization,
50,000 - 60,000 magnification normally used.Specimens are negatively
stained by Potassium phosphotungstate and scanned under EM
Viruses may be detected in the following specimens.
Virus particles are detected and identified on the basis of morphology.
A) Shape
Rabiesvirus –bullet shaped
Rotavirus –Cart wheel
Coronavirus –petal shaped peplomers
Adenovirus –space vehicle shaped
Astrovirus ---Star shaped
12. Cont…
12
B) Direct detection from specimens
For viruses that are difficult to cultivate ,EM can be used as primary tool
for diagnosis
Faeces Rotavirus, Adenovirus
Norwalk like viruses
Astrovirus, Calicivirus
Vesicle Fluid HSV
VZV
Skin scrapings papillomavirus, orf
molluscum contagiosum
13. Cont..
13
c)As an alternative to tissue culture
As tissues culture is time consuming and technically
demanding ,EM is used as an alternative :-
1) Vesicular rashes –HSV and VZV detection from
vesicular fluid
2) Meningitis—Detection of enterovirus and mumps from
CSF.
Virus detection from tissue cultures EM can be used for
detection of viral growth in tissue culture
15. 2)Immune Electron Microscopy
• The sensitivity and specificity of EM can be improved by
adding specific antiviral antibody to the specimen to
aggregate the virus particles which can be centrifuged
• The sediment is negatively stained and viewed under
EM
11/28/2022 Cristi Francis 15
Expensive equipment
Expensive maintenance
Require experienced observer
Sensitivity often low
Problems with Electron Microscopy:
16. 3) Fluroscent Microscope
Direct immumofluroscence technique is used to
detect viral particles in the clinical samples.
Procedure:-Specimen is mounted on slide stained
with antiviral antibody tagged with fluroscent dye and
viewed under fluroscent microscope
Advantages:
Convenient for many hospital (diagnostic level) labs
Easy availability of good quality commercial reagents
Disadvantages:
Cannot be used for viruses with complicated antigenic structure
(eg. Rhinoviruses, enteroviruses
17. Cont…
17
Clinical applications:-
a)rabies virus Ag in skin biopsy , corneal smear of
infected patients
b)Syndromic approach-Rapid diagnosis of respiratory
infections by influenza virus, adenovirus, Herpesvirus
can be carried out by adding specific antibodies to
each of these viruses.
c)Detection of adenovirus from conjuctival smears
18. 4) Light Microscopy inclusion
bodies
• It is basically crystalline aggregates of virions or
collections of replicating virus particles either in the
nucleus or cytoplasm.
• It is not sensitive or specific
Most characteristic histological feature in virus infected
cells
Structures with distinct size, shape, location & staining
properties
crystalline aggregates of virions or
Made up of virus antigens present at the site of virus
synthesis or
Degenerative changes produced by viral infection
18
19. Presumptive etiologic diagnosis
• Intranuclear inclusions
(mostly DNA viruses)
• Acidophilic(pink ) Cowdry
type A(HSV, varicella zoster
virus)-Torres bodies in
yellow fever
• Cowdry type B(Adeno and
polio)
• Basophilic(blue) Owl eye
appaerance in CMV , adeno
virus
• Intracytoplasmic inclusions
(mostly RNA viruses)
• Guarnieri bodies(small pox)
• Negri bodies(Rabies)
• Paschen bodies in (variola )
• Bollininger bodies in
fowlpox
• HP bodies in Molluscum
contagiosum
Cristi Francis 19
20. Negri body ( Intracytoplasmic)- Rabies
Owl eye (Intranuclear )- CMV
11/28/2022 Cristi Francis 20
21. Immunoperoxidase staining
• Tissue sections or cells coated with viral
antigens are stained using antibodies tagged
with Horse radish peroxidase following which
hydrogen peroxide and a colouring agent
(benzidine derivative) are added.
• The color insoluble precipitate complex
formed can be viewed under light microscope
.
11/28/2022 Cristi Francis 21
22. Cont…
22
Tzanck test:
Performed by staining material from vesicular
scrapings with Giemsa, H&E or Papanicolaou stain
Multinucleated giant cells seen with the nuclei having
a ground-glass and molded or multifaceted
appearance
Herpes : Multinucleated giant cell--
23. 5) Antigen detection
23
Include immunofluorescence testing of
nasopharyngeal aspirates for respiratory viruses e.g..
RSV, flu A, flu B, and adenoviruses,
Detection of rotavirus antigen in diarrheic stool
p24 Ag detection for HIV infected patients serum
NS1 Ag for dengue virus
Detection of HSV and VZV in skin scrappings,
Detection of HBsAg and HbeAg for Hepatites B vitrus
from serum
Advantage : rapid, result available within a few hours
24. 6)Detection of viral antibodies
24
Antibody detection from serum
Conventional diagnostic techniques:--
1)Heterophile agglutionation test(Paul Bunnel
test for EBV )
2) Haemagglutination inhibition (HAI) for
influenza virus and arbovirus infection
3) Neutralization test for poliovirus and
arbovirus
4) Complement fixation test for
poliovirus,arbovirus and rabies virus infection
25. Cont…
25
Newer diagnostic techniques :-
1)Anti-Hbc,AntiHBs and AntiHBe antibodies for
Hepaties B infection.
2)Anti-Hepatitis C antibodies
3)Antibodies against HIV 1 and HIV 2 antigens
from serum
4) Anti-Dengue IgM/IgG antibodies from serum
27. 1)Nucleic acid probes
27
Enzyme or radiolabelled nucleic acid sequence
complemantary to a part of nuclei acid sequence of
target virus.
When added to clinical sample , it hybridizes to the
corresponding part of VNA .Depending on type of
label attached probe can be detected by calorimetric
methods (Dot Blot hybridization or gamma counting)
Without amplification it detectes viral genes in the
specimen
Used in identification of - CMV
Papillomavirus
Epstein – Barr virus
28. 2)PCR
28
DNA Amplification involves 3 steps :-
a) Viral DNA extraction from the specimen
b) Amplification of specific region of viral DNA
c) Detection of amplified products by gel
electrophoresis
Used to in diagnosis of : HIV – 1 & 2,
Measles. Rota viruses.
Rhinovirus,Enteroviruses.HPV, Coxackie.
Parvoviruses B 19 ,Echoviruses, HSV, HHV –
Hepatitis (B,C,D,E). Rubella virus, V-Z virus.
.
29. Cont …
29
Advantages of PCR:
Extremely high sensitivity, may detect down to one viral genome
per sample volume
Easy to set up
Fast turn-around time
Disadvantages of PCR
Extremely liable to contamination
High degree of operator skill required .
.
30. 3) RT-PCR
30
For detection of RNA viruses.
After RNA extraction, viral RNA is reverse
transcribed to DNA then subjected for
amplification .
Both PCR and RT-PCR cannot quantify the viral
load in specimen .
31. 4)Real time PCR
31
Advantage of quantifying viral nucleic acid load in
specimen.So used to moniter the treatment .
It takes less time than PCR
32. Animal Inoculation
32
Earliest method for cultivation of viruses.
Reed and colleagues (1900) used human
volunteers for work on Yellow fever.
Landsteiner and Popper (1909)- Monkeys for
isolation of polioviruses.
Theiler (1903)- Pioneered use of white mice.
Infant (suckling mice)- coxsackie and arboviruses
Other animals – Guinea pig, rabbit and ferret
Inoculation – Intracerebral, subcutaneous,
intraperitoneal or intranasal
Growth detected – Death, disease or visible lesion
33. Cont…
33
Disadvantage – 1) Immunity may interfere with viral
growth.
2) Animal often harbour latent
viruses
Uses (Research use):-To study viral pathogenesis
or viral oncogenesis
(Diagnostic use):-Primary isolation of virus which
are difficult to cultivate like arbovirus and
coxsackie virus.
34. Embryonated Egg
Dr.T.V.Rao MD
34
Goodpasture (1931) – First used hen’s egg for
cultivation of viruses and the method was further
developed later by Burnett
8-11 days old eggs are used.
Choreoallantoic membrane (CAM) – visible lesion
(Pocks).
36. 36
Site Organism Age of Embryo
Chorio - allantois Pox and Herpes group
Rous sarcoma virus
10-12 days
Amniotic sac Orthomyxoviruses and
paramyxoviruses
7-12 days
Allantoic sac Influenza virus for vaccine
production ,Mumps virus,
Newcastle virus
10-12 days.
Yolk sac Some viruses, Chlamydia
and rickettsiae
6-7 days
37. Cont….
37
CAM-Each infectious virus particle form one pock.So
number of pocks present represent number of viruses in
inoculum . Different virus have different morphology
Vaccinia pocks –more haemorrhagic and necrotic
than variola .
Pocks of HSV-2 are larger than HSV-1
Ceiling temperature:-It is the maximum temperature
above which pock formation is inhibited .
Eg:- Variola -37 C
Vaccinia -41 C
Amniotic cavity—Primary isolation of influenza virus .
Viral growth measured by detection of haemagglutinin
antigens in amniotic fluid .
38. Cont….
Dr.T.V.Rao MD
38
Allantoic cavity –Larger cavity so used for better
yield of viral vaccines .
Egg derived vaccines:- Influenza vaccine , Yellow
fever (17D) vaccine and rabies (Flury Strain )
vaccine .
Duck eggs are bigger than hens egg hence
produce better yield of rabies virus for preparation
of inactivated non neural vaccines .
Yolk sac –Growth of encephalities virus may result
in death of embryo .
39. Tissue Culture
Dr.T.V.Rao MD
39
Steinhardt and colleagues (1913)- maintained the
vaccinia virus in fragments of rabbit cornea.
Maitland (1928)- used chopped tissue in nutrient
media.
Enders Weller and Robbins (1949)- grown
Poliovirus in tissue of non neural origin.
40. Types of tissue cultures
40
1.Organ Culture:
Small bits of organ maintained preserving original
architecture.
Isolation of fastidious viruses which are having
affinity to specific organs.
e.g. Tracheal ring organ culture for Coronavirus.
41. 2.Explant Culture
41
Fragments of minced tissue can be grown as
‘explants’ embeded in plasma clots.
Originally known as tissue culture.
Useful for isolation of viruses in the Latent state.
e.g. Adenoid tissue explant culture.
Seldom employed.
42. 3.Cell culture
42
This is the only isolation method which is used now.
Tissues are completely digested by the action of
proteolytic enzymes like trypsin or collagenase followed
by machanical shaking which is done so that
component cells are dissociated into individual .Cells are
washed counted and suspended in growth medium
43. MEDIUM FOR CELL CULTURE
Dr.T.V.Rao MD
43
Eagle’s minimum essential medium (MEM)
Base (Hank’s or Earle’s balanced salt solution)
L-amino acids
Vitamins
Glucose
Salts and 5-10% fetal calf serum
Antibiotics
Phenol red as indicator
Buffer- bicarbonate –pH-7.2-7.4
Such media will enable cell to multiply with division
time 24-48 hour
44. 44
Tissues are dissociated into component
cells.
Washed, counted and suspended in
growth medium.
Antibiotics and phenol red are added
Dispensed in bottles, tubes or Petri
dishes
Cells adhere to glass surface
Confluent monolayer sheet of cells
45. 1. Primary cells cultures
45
Normal cells freshly taken from organs and
cultured.
Capable of only limited growth in cultures.(5-10
divisions)
They maintain a diploid karyosome .
e.g. Monkey kidney, Human amnion and Chick
embryo cell cultures.
Use – Primary Isolation and cultivation for vaccine
production.
Ex-Rhesus monkey kidney cell culture.
Human amnion cell, Chick embryo cell line
46. 2.Secondary or diploid cell strains
46
They can divide maximum upto 10-50 divisions
before they undergo death .
They are derived from normal host cells and
maintain diploid karyosome .
Derived from human fibroblasts so useful for
isolation of fastidious viruses and viral vaccine
preparation .
Ex- WI-38 Human embryonic lung cell strain.
HL-8 Rhesus embryo cell strain
Human fibroblast cell line
MRC-5
47. 3.Continuous/Established cell
lines
47
Derived from cancerous cells ,hence are capable of
indefinite growth .
They possess altered haploid chromosome.
They are easy to maintain in the laboratories by serial
subculturing so most widely used cell lines .
Ex- HeLa-Human carcinoma of cervix cell line
HEP-2-Human epithelioma of larynx cell line
Vero-Vervet monkey kidney cell line
BHK 21– Baby Hamster Kidney cell line
McCoy –Human synovial carcinoma cell line
KB –Human carcinoma of nasopharynx cell line
48. Detection of virus growth in
cell culture
48
1 Cytopathic effect
2 Metabolic inhibition
3 Haemadsorption
4 Interference
5 Transformation
6 Immunoflurescence
7 Detection of viral specific Nucleic acid
8 Detection of enzymes
9 Electron microscopy
49. 1 Cytopathic effect
49
Roundening of cells- Picornavirus (Viral replication
leads to neclear pyknosis , rounding, refratility,
degeneration)
Cell necrosis and lysis –Enterovirus
Syncytium formation- measles, RSV, HSV
(neighbouring cell fused together to form
multinucleated giant cell).
Discreate focal degeneration –Herpes virus
Rounding and aggregatation –Adenovirus (large
granular clumps like bunches of grapes )
Cytoplasmic vacuolation-SV-40
51. 2.Metabolic inhibition
Dr.T.V.Rao MD
51
The medium turns acid due to cellular metabolism
in normal cell cultures .
When viruses grow in cell cultures ,Cell
metabolism is inhibited and no acid production
Indicated by change in color of indicator (phenol
red) of medium
52. 3.Haemadsorption
Dr.T.V.Rao MD
52
When haemagglutinating viruses grow in cell
culture , their prescence is indicated by addition
of guinea pig erthrocytes to cultures .They will
absorb onto surface of cells if viruses are
multiplying in culture ….K/a Haemadsorption
53. 4. Interference .
Dr.T.V.Rao MD
53
The multiplication of one virus in cell usually
inhibits multiplication of second virus called the
challenge of virus , when added to culture
The growth of a non cytopathogenic virus in cell
culture can be tested by subsequent challenge
with a known cytopathogenic virus .
The growth of first will inhibit infection by the
second virus by interference .
54. 5.Tranformation
54
Tumor forming (oncogenic viruses ) induce cell
tranformation and loss of contact inhibition so
growth appears as piled up fashion forming
microtumors
Ex-Herpes virus , adenovirus ,hepadnavirus ,
papovavirus , retrovirus
55. 6 .Immunofluroscence and
others
55
Cell from virus infected cultures can be stained by
flurescent conjugated antiserum and examined
under UV microscope for presence of virus antigen
.
7.Detection of viral specific nucleic acid –PCR
8.Detection of enzymes –Reverse transcriptase in
retrovirus
9.Electron microscopy –viruses have distinctive
appearance and can be detected by EM of
ultrathin sections of infected cells
56. Viral assay
Dr.T.V.Rao MD
56
The virus content in specimen can be assayed in 2
ways :-
A). Total virus particle count
1 Electron Microscopy
2 Haemagglutination
B). Infectious virions assay
1 Quantal assay
2 Quantitative infective assay :--a) Plaque assay
b) Pock assay
57. A). Total virus particle count
Dr.T.V.Rao MD
57
1)Electron Microscopy:-
By simple negative staining ,the virus particles in
a suspension can be accounted directly under
EM .
The virus suspension can be mixed with a known
latex particles.
The ratio between particles under EM gives an
indication of the virus count
58. Cont..
58
2)Haemagglutination :-
Determination of haemagglutinating titres with
haemagglutinating viruses.
Approx 107 influenza virions are required to
produce macroscopic agglutination of convenient
quantity of chicken erthrocytes (0.5 %
suspension )
59. B). Infectious virions assay
59
1) Quantal assay :-
Introduced in animal virology by Dulbecco (1952)
Indicate Presence or absence of infectious viruses.
Assays can be carried out in animals , eggs or tissue
culture. Endpoints used for infectivity titration are
death of animals , haemagglutination production in
amniotic fluid or appearance of CPE in cell cultures .
These assays determine the extent to which a virus
suspension can be diluted and still containes
infectious viruses
The virus titre expressed as ID50/ml the highest
dilution of inoculum that would produce an effect in 50
% of animals , eggs or cell cultures
60. 2).Quantitative Assays
a) Plaque assays
Lytic viruses only
Steps
Serial dilution of virion-
containing solution
Create tissue culture plates
Spread diluted virus
Overlay with agar—
prevents diffusion
Count number of plaques
Each plaque represents 1
PFU (Plaque Forming Unit)
Figure : Plaque assays used to
quantitate a viral stock.
Courtesy of Teri Shors
61. Cont…
61
b) Pock assay:-
Viruses like herpes and vaccinia form pocks when
inoculated on CAM on embryonated egg .
Such viruses can be assayed by counting number
of pocks on CAM by viruses
Advantages:
• Specificity maximum
• Sensitivity usually adequate
• Isolate available for characterization
Disadvantages:
• Cell-culture facilities needed
• Slow (results in days to weeks)
• Doesn’t work for all viruses.
62. Serology
Dr.T.V.Rao MD
62
Detection of rising titers of antibody between acute and
convalescent stages of infection, or the detection of IgM in primary
infection.
Classical Techniques Newer Techniques
1. Complement fixation tests (CFT) 1. Radioimmunoassay (RIA)
2. Haemagglutination inhibition tests 2. Enzyme linked immunosorbent assay (EIA)
3. Immunofluorescence techniques (IF) 3. Particle agglutination
4. Neutralization tests 4. Western Blot (WB)
5. Counter-immunoelectrophoresis 5. RIBA, Line immunoassay
64. Serology
Dr.T.V.Rao MD
64
Since the isolation and identification of viruses
is not commonly done in the clinical
laboratory, the clinical picture and serology
plays a greater role in the diagnosis of viral
disease. The major types of antibodies that
are assayed for are neutralizing,
haemagglutination inhibiting and complement
fixing antibodies. Complement fixing
antibodies follow the kinetics of IgM and are
most useful in indicating a current or recent
infection
65. Serology
Dr.T.V.Rao MD
65
The development of
antibodies to different
components of the
virus is used in
staging the disease.
For example in
hepatitis B and HIV
infections this
approach is used.
66. Viral Serology
Indirect
Primary and secondary responses to viral infections
IgM (1st exposure)
IgG (2nd exposure)
Figure 5.18: Primary (1 degree) and secondary (2 degree) antibody responses toward a viral pathogen.
67. Serological Diagnosis
Dr.T.V.Rao MD
67
Detection of
Immunologlublins Ig G.
Ig M Ig A
Raise of titers Ist
sample later sample
(convalescent sample)
tested after 10 – 14
days Raise of titer is
diagnostic
68. Viral Serology
Enzyme-Linked Immuno-
Sorbant Assays (ELISAs)
Enzyme reacts with substrate to
produce colored product
Very sensitive
HIV test
If positive twice, Western Blotting is performed
next
69. ELISA for HIV antibody
Micro plate ELISA for HIV antibody: colored wells indicate reactivity
Dr.T.V.Rao MD
69