Karma data integration tool: modeling person, organizations, positions, publication data and generating RDF (N-Triples files).

1. #VIVOifest15
Karma data integration:
creating semantic web
compliant VIVO data
Violeta Ilik @violetailik
Galter Health Sciences Library
Feinberg School of Medicine
Northwestern University Clinical and
Translational Sciences Institute (NUCATS), Chicago, IL
https://galter.northwestern.edu/staff/Violeta-Ilik
http://vivo.vivoweb.org/display/n10603

2. #VIVOifest15
Outline:
• Examine your data
• Clean your data
• Create local ontology extensions (optional)
• Model your data
• Load your data
Violeta Ilik @violetailik

3. #VIVOifest15
Examine your data
Accommodate within existing ontologies most of your
data
Opt for local extensions if necessary
• Local unique identifiers (people & organizations)
• Specific needs (publication types; non-traditional
scholarly outputs …)
Violeta Ilik @violetailik

4. #VIVOifest15
Clean your data
• Utilizing local resources and skills
– polyglot programing skills (Python, Perl,
XSLT, SAS, R, OpenRefine)
Violeta Ilik @violetailik

5. #VIVOifest15
Ontology: VIVO core
Violeta Ilik @violetailik

6. #VIVOifest15
VIVO local ontology extensions
Violeta Ilik @violetailik

7. #VIVOifest15
Modeling organizations/units data
Violeta Ilik @violetailik

8. #VIVOifest15
Modeling organizations/units data
Violeta Ilik @violetailik

9. #VIVOifest15
Modeling person data
Violeta Ilik @violetailik

10. #VIVOifest15
Modeling person data
Violeta Ilik @violetailik

11. #VIVOifest15
Modeling person’s positions data
Violeta Ilik @violetailik

12. #VIVOifest15
Modeling person’s positions data
Violeta Ilik @violetailik

13. #VIVOifest15
Modeling publications data –
academic articles
Violeta Ilik @violetailik

14. #VIVOifest15
Modeling publications data –
comparative study
Violeta Ilik @violetailik

15. #VIVOifest15
References:
• https://github.com/vioil/ontology_extensions
• https://github.com/vioil/R2RML-Karma
• https://www.youtube.com/channel/
UCb9vsw2XvZDzZtEwe0aH9eA
• http://www.isi.edu/integration/karma/
Violeta Ilik @violetailik

16. #VIVOifest15
Discussion
Thank you
Violeta Ilik
Violeta Ilik @violetailik