This document describes a Kriging component for spatial interpolation of climatological variables in the OMS modeling framework. Kriging is a geostatistical technique that interpolates values based on measured data and the spatial autocorrelation between data points. The component implements ordinary and detrended Kriging algorithms using 10 semivariogram models. It can interpolate both raster and point data and outputs the interpolated climatological variable values. Links are provided for downloading the component code, data, and OMS project files needed to run the interpolation.
Summary
Methods for removal of free-surface and internal multiples have been developed from bath a feedback model approach and inverse scatterin g theory. White these two formulations derive from different mathematica) viewpoints,
the resulting algorithm s for free-surface multiple are very similar. By contrast , the feedback and inverse scattering
method for internal multiple are totally different and have different requirements for sub surface information or
interpretive intervention . The former removes all multiple related to a certain boundary with the a of a surface
integral along this boundary ; the alter wilt predict and attenuate a ll internal multiple a t the same time . In this paper, we continue our comparison study of these internal multiple attenuation method ; specifically , we examine two
different realizations of the feedback method and the inverse scattering technique .
Advanced Stability Analysis of Control Systems with Variable Parametersjournal ijrtem
The purpose of the current research is to advance further the D-Partitioning method and
emphasize on its practical application. It has the objective to clarify it in a user friendly manner in order to
simplify its implementation. By applying the basic initial ideas of the method, the main line of the research is the
development of a generalized stability analysis tool and demonstrating its application. With the aid of this tool,
proper parameter values can be chosen for a desirable performance and stability of a system. The analysis tool
can be practically used when one, two or more system’s parameters are varied independently or simultaneously.
Basically this tool defines regions of stability in the space of the system’s parameters.
Summary
Methods for removal of free-surface and internal multiples have been developed from bath a feedback model approach and inverse scatterin g theory. White these two formulations derive from different mathematica) viewpoints,
the resulting algorithm s for free-surface multiple are very similar. By contrast , the feedback and inverse scattering
method for internal multiple are totally different and have different requirements for sub surface information or
interpretive intervention . The former removes all multiple related to a certain boundary with the a of a surface
integral along this boundary ; the alter wilt predict and attenuate a ll internal multiple a t the same time . In this paper, we continue our comparison study of these internal multiple attenuation method ; specifically , we examine two
different realizations of the feedback method and the inverse scattering technique .
Advanced Stability Analysis of Control Systems with Variable Parametersjournal ijrtem
The purpose of the current research is to advance further the D-Partitioning method and
emphasize on its practical application. It has the objective to clarify it in a user friendly manner in order to
simplify its implementation. By applying the basic initial ideas of the method, the main line of the research is the
development of a generalized stability analysis tool and demonstrating its application. With the aid of this tool,
proper parameter values can be chosen for a desirable performance and stability of a system. The analysis tool
can be practically used when one, two or more system’s parameters are varied independently or simultaneously.
Basically this tool defines regions of stability in the space of the system’s parameters.
Method of Fracture Surface Matching Based on Mathematical StatisticsIJRESJOURNAL
ABSTRACT: Fracture surface matching is an important part of point cloud registration. In this paper, a method of fracture surface matching based on mathematical statistics is proposed. We reconstruct a coordinate system of the fractured surface points, and analyze the characteristics of the point cloud in the new coordinate system, using the theory of mathematical statistcs. The general distribution of the points is determined. The method can realize the matching relation among some point cloud.
Evolution of 3D Surface Parameters: A Comprehensive Surveytheijes
The International Journal of Engineering & Science is aimed at providing a platform for researchers, engineers, scientists, or educators to publish their original research results, to exchange new ideas, to disseminate information in innovative designs, engineering experiences and technological skills. It is also the Journal's objective to promote engineering and technology education. All papers submitted to the Journal will be blind peer-reviewed. Only original articles will be published.
Concurrent Ternary Galois-based Computation using Nano-apex Multiplexing Nibs...VLSICS Design
Novel realizations of concurrent computations utilizing three-dimensional lattice networks and their corresponding carbon-based field emission controlled switching is introduced in this article. The formalistic ternary nano-based implementation utilizes recent findings in field emission and nano applications which include carbon-based nanotubes and nanotips for three-valued lattice computing via field-emission methods. The presented work implements multi-valued Galois functions by utilizing concurrent nano-based lattice systems, which use two-to-one controlled switching via carbon-based field emission devices by using nano-apex carbon fibers and carbon nanotubes that were presented in the first part of the article. The introduced computational extension utilizing many-to-one carbon field-emission devices will be further utilized in implementing congestion-free architectures within the third part of the article. The emerging nano-based technologies form important directions in low-power compact-size regular lattice realizations, in which carbon-based devices switch less-costly and more-reliably using much less power than silicon-based devices. Applications include low-power design of VLSI circuits for signal processing and control of autonomous robots.
ENHANCEMENT OF TRANSMISSION RANGE ASSIGNMENT FOR CLUSTERED WIRELESS SENSOR NE...IJCNCJournal
Transmitter range assignment in clustered wireless networks is the bottleneck of the balance between
energy conservation and the connectivity to deliver data to the sink or gateway node. The aim of this
research is to optimize the energy consumption through reducing the transmission ranges of the nodes,
while maintaining high probability to have end-to-end connectivity to the network’s data sink. We modified
the approach given in [1] to achieve more than 25% power saving through reducing cluster head (CH)
transmission range of the backbone nodes in a multihop wireless sensor network with ensuring at least
95% end-to-end connectivity probability.
Educational slides on TRACLUS, an algorithm for clustering trajectory data created by Jae-Gil Lee, Jiawei Han and Kyu-Young Wang, published on SIGMOD’07.
http://web.engr.illinois.edu/~hanj/pdf/sigmod07_jglee.pdf
A Subgraph Pattern Search over Graph DatabasesIJMER
International Journal of Modern Engineering Research (IJMER) is Peer reviewed, online Journal. It serves as an international archival forum of scholarly research related to engineering and science education.
International Journal of Modern Engineering Research (IJMER) covers all the fields of engineering and science: Electrical Engineering, Mechanical Engineering, Civil Engineering, Chemical Engineering, Computer Engineering, Agricultural Engineering, Aerospace Engineering, Thermodynamics, Structural Engineering, Control Engineering, Robotics, Mechatronics, Fluid Mechanics, Nanotechnology, Simulators, Web-based Learning, Remote Laboratories, Engineering Design Methods, Education Research, Students' Satisfaction and Motivation, Global Projects, and Assessment…. And many more.
Method of Fracture Surface Matching Based on Mathematical StatisticsIJRESJOURNAL
ABSTRACT: Fracture surface matching is an important part of point cloud registration. In this paper, a method of fracture surface matching based on mathematical statistics is proposed. We reconstruct a coordinate system of the fractured surface points, and analyze the characteristics of the point cloud in the new coordinate system, using the theory of mathematical statistcs. The general distribution of the points is determined. The method can realize the matching relation among some point cloud.
Evolution of 3D Surface Parameters: A Comprehensive Surveytheijes
The International Journal of Engineering & Science is aimed at providing a platform for researchers, engineers, scientists, or educators to publish their original research results, to exchange new ideas, to disseminate information in innovative designs, engineering experiences and technological skills. It is also the Journal's objective to promote engineering and technology education. All papers submitted to the Journal will be blind peer-reviewed. Only original articles will be published.
Concurrent Ternary Galois-based Computation using Nano-apex Multiplexing Nibs...VLSICS Design
Novel realizations of concurrent computations utilizing three-dimensional lattice networks and their corresponding carbon-based field emission controlled switching is introduced in this article. The formalistic ternary nano-based implementation utilizes recent findings in field emission and nano applications which include carbon-based nanotubes and nanotips for three-valued lattice computing via field-emission methods. The presented work implements multi-valued Galois functions by utilizing concurrent nano-based lattice systems, which use two-to-one controlled switching via carbon-based field emission devices by using nano-apex carbon fibers and carbon nanotubes that were presented in the first part of the article. The introduced computational extension utilizing many-to-one carbon field-emission devices will be further utilized in implementing congestion-free architectures within the third part of the article. The emerging nano-based technologies form important directions in low-power compact-size regular lattice realizations, in which carbon-based devices switch less-costly and more-reliably using much less power than silicon-based devices. Applications include low-power design of VLSI circuits for signal processing and control of autonomous robots.
ENHANCEMENT OF TRANSMISSION RANGE ASSIGNMENT FOR CLUSTERED WIRELESS SENSOR NE...IJCNCJournal
Transmitter range assignment in clustered wireless networks is the bottleneck of the balance between
energy conservation and the connectivity to deliver data to the sink or gateway node. The aim of this
research is to optimize the energy consumption through reducing the transmission ranges of the nodes,
while maintaining high probability to have end-to-end connectivity to the network’s data sink. We modified
the approach given in [1] to achieve more than 25% power saving through reducing cluster head (CH)
transmission range of the backbone nodes in a multihop wireless sensor network with ensuring at least
95% end-to-end connectivity probability.
Educational slides on TRACLUS, an algorithm for clustering trajectory data created by Jae-Gil Lee, Jiawei Han and Kyu-Young Wang, published on SIGMOD’07.
http://web.engr.illinois.edu/~hanj/pdf/sigmod07_jglee.pdf
A Subgraph Pattern Search over Graph DatabasesIJMER
International Journal of Modern Engineering Research (IJMER) is Peer reviewed, online Journal. It serves as an international archival forum of scholarly research related to engineering and science education.
International Journal of Modern Engineering Research (IJMER) covers all the fields of engineering and science: Electrical Engineering, Mechanical Engineering, Civil Engineering, Chemical Engineering, Computer Engineering, Agricultural Engineering, Aerospace Engineering, Thermodynamics, Structural Engineering, Control Engineering, Robotics, Mechatronics, Fluid Mechanics, Nanotechnology, Simulators, Web-based Learning, Remote Laboratories, Engineering Design Methods, Education Research, Students' Satisfaction and Motivation, Global Projects, and Assessment…. And many more.
IJRET : International Journal of Research in Engineering and Technology is an international peer reviewed, online journal published by eSAT Publishing House for the enhancement of research in various disciplines of Engineering and Technology. The aim and scope of the journal is to provide an academic medium and an important reference for the advancement and dissemination of research results that support high-level learning, teaching and research in the fields of Engineering and Technology. We bring together Scientists, Academician, Field Engineers, Scholars and Students of related fields of Engineering and Technology
SVD BASED LATENT SEMANTIC INDEXING WITH USE OF THE GPU COMPUTATIONSijscmcj
The purpose of this article is to determine the usefulness of the Graphics Processing Unit (GPU) calculations used to implement the Latent Semantic Indexing (LSI) reduction of the TERM-BY DOCUMENT matrix. Considered reduction of the matrix is based on the use of the SVD (Singular Value Decomposition) decomposition. A high computational complexity of the SVD decomposition - O(n3), causes that a reduction of a large indexing structure is a difficult task. In this article there is a comparison of the time complexity and accuracy of the algorithms implemented for two different environments. The first environment is associated with the CPU and MATLAB R2011a. The second environment is related to graphics processors and the CULA library. The calculations were carried out on generally available benchmark matrices, which were combined to achieve the resulting matrix of high size. For both considered environments computations were performed for double and single precision data.
Choice of Numerical Integration Method for Wind Time History Analysis of Tall...inventy
Wind tunnel tests are being performed routinely around the world for designing tall buildings but the advent of powerful computational tools will make time-history analysis for wind more common in near future. As the duration of wind storms ranges from tens of minutes to hours while earthquake durations are typically less than a three to four minutes, the choice of a time step size (Δt) for wind studies needs to be much larger both to reduce the computational time and to save disk space. As the error in any numerical solution of the equation of motion is dependent on step size (Δt), careful investigations on the choice of numerical integration methods for wind analyses are necessary. From a wide variety of integration methods available, it was decided to investigate three methods that seem appropriate for 3D-time history analysis of tall buildings for wind. These are modal time history analysis, the Hilber-Hughes-Taylor (HHT) method or α-method with α=- 0.1, and the Newmark method with β=0.25 and γ=0.5 ( i.e., trapezoidal rule). SAP2000, a common structural analysis software tool, and a 64-story structure are used to conduct all the analyses in this paper. A boundary layer wind tunnel (BLWT) pressure time history measured at 120 locations around the building envelope of a similar structure is used for the analyses. Analyses performed with both the HHT and Newmark-method considering P-delta effects show that second order effects have a considerable impact on both displacement and acceleration response. This result shows that it is necessary to account P-delta effect for wind analysis of tall buildings. As the direct integration time history analysis required very large computation times and very large computer physical memory for a wind duration of hours, a modal analysis with reduced stiffness is considered as a good alternative. For that purpose, a non-linear static analysis of the structure with a load combination of 1.0D + 1.0L is performed in SAP2000 and the reduced stiffness of the structure after the analysis is used to conduct an eigenvalue analysis to extract the mode shapes and frequencies of this structure. Then the first 20- modes are used to perform a modal time history analysis for wind load. The result shows that the responses from modal analysis with “20-mode (reduced stiffness)” are comparable with that from the P-Δ analyses of Newmark-method
A Novel Technique in Software Engineering for Building Scalable Large Paralle...Eswar Publications
Parallel processing is the only alternative for meeting computational demand of scientific and technological advancement. Yet first few parallelized versions of a large application code- in the present case-a meteorological Global Circulation Model- are not usually optimal or efficient. Large size and complexity of the code cause making changes for efficient parallelization and further validation difficult. The paper presents some novel techniques to enable change of parallelization strategy keeping the correctness of the code under control throughout the modification.
Geoid height determination is one of the major problems of geodesy because usage of satellite
techniques in geodesy isgetting increasing. Geoid heights can be determined using different methods according
to the available data. Soft computing methods such as Fuzzy logic and neural networks became so popular that
they are used to solve many engineering problems. Fuzzy logic theory and later developments in uncertainty
assessment have enabled us to develop more precise models for our requirements. In this study, How to
construct the best fuzzy model is examined. For this purpose, three different data sets were taken and two
different kinds (two inpust one output and three inputs one output) fuzzy model were formed for the calculation
of geoid heights in Istanbul (Turkey). The Fuzzy models results of these were compared with geoid heights
obtained by GPS/levelling methods. The fuzzy approximation models were tested on the test points.
Path Loss Prediction by Robust Regression Methodsijceronline
International Journal of Computational Engineering Research (IJCER) is dedicated to protecting personal information and will make every reasonable effort to handle collected information appropriately. All information collected, as well as related requests, will be handled as carefully and efficiently as possible in accordance with IJCER standards for integrity and objectivity.
The concepts related of the New Model of River Adige, and especially an analysys of the existing OMS components ready and their interpretation on the basis of travel time approaches
Velocity analysis is one of the prime aspects of seismic data processing. Velocity analysis is an
iterative process and one keeps on improving subsurface velocity field at different stages of processing. These
analyses require an initial velocity field, but in a virgin area, it is required, to estimate this, from the seismic
data itself by employing CVS (Constant Velocity Stack) or t
2
-x
2 methods. In the present context, we demonstrate
using field data, that t
2
-x
2 method based velocities are more reliable than CVS based velocities for the
subsequent velocity analysis purposes.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
insect taxonomy importance systematics and classification
Jgrass-NewAge: Kriging component
1. Bancheri and Formetta
LINKERS
JGrass-NewAGE: Kriging component
Marialaura Bancheri*†
and Giuseppe Formetta†
*
Correspondence:
marialaura.bancheri@unitn.it
Dipartimento di Ingegneria Civile
Ambientale e Meccanica, Trento,
Mesiano di Povo, Trento, IT
Full list of author information is
available at the end of the article
†
Code Author
Abstract
These pages teach how to run the Kriging component inside the OMS 3 console.
Some preliminary knowledge and installation of OMS is mandatory (see @Also useful).
This component deals with the interpolation of the spatial behavior of climatological
variable following the approach proposed by Matheron (1981) and Goovaerts (1997). It
implements 10 theoretical semivariogram models and 4 types of Kriging algorithms, for
a total of forty interpolation options. The component can be used with both raster
inputs and punctual inputs. It is perfectly integrated in the system and its outputs can
be the inputs of different components.
@Version:
0.1
@License:
GPL v. 3
@Inputs:
• Climatological variable (−);
• Shapefile of the weather station, containing also the elevation information (m)
required for detrended kriging (DK);
• Shapefile of the sub-basin centroid containing also the elevation information (m)
required for detrended kriging (DK);
• Start date (String);
• End date (String);
• number of station the algorithm has to consider;
• range (m);
• sill (−);
• nugget (−);
• type of the semivariogram to use (String);
@Outputs:
• Climatological variable interpolated (−);
@Doc Author: Marialaura Bancheri
@References:
• See References section below
Keywords: OMS; JGrass-NewAGE Component Description; Kriging
2. Bancheri and Formetta Page 2 of 7
Code Information
Executables
This link points to the jar file that, once downloaded can be used in the OMS console:
https://github.com/GEOframeOMSProjects/OMS_Project_Krigings/tree/master/
lib
Developer Info
This link points to useful information for the developers, i.e. information about the code
internals, algorithms and the source code
https://github.com/geoframecomponents
Also useful
To run JGrass-NewAGE it is necessary to know how to use the OMS console. Information
at: ”How to install and run the OMS console”,
https://alm.engr.colostate.edu/cb/project/oms).
JGrasstools are required for preparing some input data (information at:
http://abouthydrology.blogspot.it/2012/11/udig-jgrasstools-resources-in-italian.
html
To visualize results you need a GIS. Use your preferred GIS, following its installation
instructions. To make statistics on the results, you can probably get benefits from R:
http://www.r-project.org/ and follow its installation instruction.
To whom address questions
marialaura.bancheri@unitn.it
Authors of documentation
Marialaura Bancheri (marialaura.bancheri@unitn.it)
This documentation is released under Creative Commons 4.0 Attribution International
3. Bancheri and Formetta Page 3 of 7
Component Description
Kriging is a group of geostatistical techniques used to interpolate the value of random
fields based on spatial autocorrelation of measured data (1, Chapter 6.2). The measure-
ments value z(xα) and the unknown value z(x), where x is the location, given according
to a certain cartographic projection, are considered as particular realizations of random
variables Z(xα) and Z(x) (Goovaerts, 1997; Isaaks and Srivastava, 1989). The estimation
of the unknown value zλ
(x), where the true unknown value is Zλ
(x), is obtained as a
linear combination of the N values at surrounding points, Goovaerts (1999):
Zλ
(x) − m(x) =
N
α=1
λ(xα)[Z(uα) − m(xα)] (1)
where m(x) and m(xα) are the expected values of the random variables Z(x) and Z(xα).
λ(xα) is the weight assigned to datum z(xα). Weights are chosen to satisfy the conditions
of minimizing the error of variance of the estimator σ2
λ, that is:
argmin
λ
σ2
λ ≡ argmin
λ
VarZλ
(x) − Z(x) (2)
under the constrain that the estimate is unbiased, i.e.
EZλ
(x) − Z(x) = 0 (3)
The latter condition, implies that:
N
α=1
λα(xα) = 1 (4)
As shown in various textbooks, e.g. Kitanidis (1997), the above conditions bring to a linear
system whose unknown is the tuple of weights, and the system matrix depends on the
semivariograms among the couples of the known sites. When it is made the assumption
of isotropy of the spatial statistics of the quantity analyzed, the semivariogram is given
by Cressie and Cassie (1993):
γ(h) :=
1
2Nh
Nh
i=1
(Z(x) − Z(x)i)2
(5)
where the distance (x, xi) ≡ h, Nh denotes the set of pairs of observations at local x and
at location xi at distance h apart from x. In order to be extended to any distance, ex-
perimental semivariogram need to be fitted to a theoretical semivariogram model. These
theoretical semivariograms contain parameters (called nugget, sill and range) to be fitted
against the existing data, before introducing in the Kriging linear system, whose solu-
tion returns the weights in eq.(1). Three main variants of Kriging can be distinguished,
(Goovaerts, 1997):
• Simple Kriging (SK),which considers the mean, m(x), to be known and constant
throughout the study area;
• Ordinary Kriging (OK) ,which account for local fluctuations of the mean, limiting
the stationarity to the local neighborhood. In this case, the mean in unknown.
4. Bancheri and Formetta Page 4 of 7
• Kriging with a trend model (here Detrended Kriging, DK), which considers that
the known local mean m(xα) varies within the local neighborhood.
The trend can be, for example, a linear regression model between the investigated variables
and a auxiliary variable, such as elevation or slope. According to Goovaerts (1997), the
trend should be subtracted from the original data and the OK of the residuals performed.
The final interpolated values will be the sum of the interpolated values and the previously
estimated trend. Variants of OK and DK are the local ordinary kriging (LOK) and local
detrended Kriging (LDK). In this case the estimate is only influenced by the measurements
belonging to a neighbor. The SI package implements the OK and the DK, since local mean
may vary significantly over the study area and the SK assumption of the known stationary
mean could be too strict, (Goovaerts, 1997). Moreover, Goovaerts (2000) found that, in
the case of trend, detrended kriging provides better results than coKriging and it is not
as computationally demanding. In SI package, the neighbor stations in the local case are
defined either in a maximum searching radius or as a number of stations closer to the
interpolation point. To estimate the errors produced by the interpolation using Kriging
techniques, we chose the leave-one-out cross validation technique (Efron and Efron, 1982).
In fact, Goovaerts (1997) states that the standard deviation cannot be used as a direct
measures of estimation precision. Moreover the procedure allows to evaluate the impact
of the different models on interpolation results, (Isaaks and Srivastava, 1989; Goovaerts,
1997; Prudhomme and Reed, 1999; Martin and Simpson, 2003; Aidoo et al. , 2015).
Leave-one-out cross validation consists of removing one data point at a time and per-
forming the interpolation for the location of the removed point, using the remaining
stations. The approach is repeated until every sample has been, in turn, removed and
estimates are calculated for each point. Interpolated and measured values for each station
were compared and the goodness of fit indexes, such as Root mean square error (RMSE)
and Nash-Sutcliffe Efficiency (NSE),were calculated to asses model performances.
Detailed Inputs description
General description
The input file is a .csv file containing a header and one or more time series of input data,
depending on the number of stations involved. Each column of the file is associated to a
different station.
The file must have the following header:
• The first 3 rows with general information such as the date of the creation of the file
and the author;
• the fourth and fifth rows contain the IDs of the stations (e.g. station number 8:
value 8, ID, ,8);
• the sixth row contains the information about the type of the input data (in this
case, one column with the date and one column with double values);
• the seventh row specifies the date format (YYYY-MM-dd HH:mm).
All this information shown in the figure 1.
5. Bancheri and Formetta Page 5 of 7
Figure 1 Heading of the .csv input file
Total precipitation
The total precipitation is given in time series or raster maps of (mm) values.
Relative humidity
The relative humidity is given in time series or raster maps of (%) values.
Air temperature
The air temperature is given in time series or raster maps of (◦
C) values.
range
range is the distance after which data are no longer correlated.
sill
sill is the total variance where the empirical variogram appears to level off.
nugget
nugget is related to the amount of short range variability in the data. A nugget that’s
large relative to the sill is problematic and could indicate too much noise and not enough
spatial correlation
semivariogram
semivariogram describes the degree of spatial dependence of the climatological variable.
Detailed Outputs description
Climatological variable
The interpolated climatological variable is given as a time series at each sub-basin centroid
Examples
The following .sim file is customized for the use of the kriging component. The .sim file
can be downloaded from here:
https://github.com/GEOframeOMSProjects/OMS_Project_Krigings/tree/master/
simulation
import static oms3.SimBuilder.instance as OMS3
def home = oms_prj
// start and end date of the simulation
def startDate= "2000 -01 -01 00:00"
def endDate="2000 -01 -01 00:00"
6. Bancheri and Formetta Page 6 of 7
OMS3.sim {
resource "$oms_prj/lib"
model(while: "reader_data.doProcess" ) {
components {
// components to be called : reader input data , lwrb and writer
output data
" reader_data " org. jgrasstools .gears.io. timedependent .
OmsTimeSeriesIteratorReader "
" vreader_station " "org.jgrasstools.gears.io.shapefile.
OmsShapefileFeatureReader "
// comment this component if you want to use the ordinary Kriging
"trend" " trendAnalysis . TrendAnalysis "
" vreader_interpolation " "org.jgrasstools.gears.io.shapefile.
OmsShapefileFeatureReader "
"kriging" "krigings.Krigings"
" writer_interpolated " "org. jgrasstools.gears.io. timedependent .
OmsTimeSeriesIteratorWriter "
}
parameter{
" reader_data .file" "${home }/ data/rain_test.csv"
" reader_data .idfield" "ID"
" reader_data .tStart" "${startDate}"
" reader_data .tEnd" "${endDate}"
" reader_data .tTimestep" 60
" reader_data .fileNovalue" " -9999"
" vreader_station .file" "${home }/ data/ rainstations .shp"
" vreader_interpolation .file" "${home }/ data/
basins_passirio_width0 .shp"
// comment this line if you want to use the ordinary Kriging
"trend. fStationsid " "ID_PUNTI_M"
// comment this line if you want to use the ordinary Kriging
"trend.fStationsZ" "QUOTA"
// comment this line if you want to use the ordinary Kriging
"trend. thresholdCorrelation " 0
"kriging.fStationsid" "ID_PUNTI_M"
"kriging. fInterpolateid " "netnum"
"kriging. inNumCloserStations " 5
"kriging.range" 123537.0
"kriging.nugget" 0.0
"kriging.sill" 1.678383
// parameter of the writing component
" writer_interpolated .file" "${home }/ output/
kriging_detrendend .csv"
" writer_interpolated .tStart" "${startDate}"
" writer_interpolated .tTimestep" 60
}
connect {
// if you want to use the ordinary Kriging uncomment this line
// " reader_data .outData" "kriging.inData"
// comment this line if you want to use the ordinary Kriging
" reader_data .outData" "trend.inData"
// comment this line if you want to use the ordinary Kriging
" vreader_station .geodata" "trend.inStations"
7. Bancheri and Formetta Page 7 of 7
" vreader_station .geodata" "kriging.inStations"
" vreader_interpolation .geodata" "kriging. inInterpolate "
// comment this line if you want to use the ordinary Kriging
"trend. outResiduals " "kriging.inData"
// comment this line if you want to use the ordinary Kriging
"trend. trend_intercept " "kriging. trend_intercept "
// comment this line if you want to use the ordinary Kriging
"trend. trend_coefficient " "kriging. trend_coefficient "
// comment this line if you want to use the ordinary Kriging
"trend. doDetrended " "kriging.doDetrended"
"kriging.outData" " writer_interpolated .inData"
}
}
}
Data and Project
The following link is for the download of the input data necessaries to execute the CI
component (as shown in the .sim file in the previous section ) :
https://github.com/GEOframeOMSProjects/OMS_Project_Krigings/tree/master/
data
The following link is for the download of the OMS project for the component:
https://github.com/GEOframeOMSProjects/OMS_Project_Krigings
%
References
1. Bancheri, M.: A flexible approach to the estimation of water budgets and its connection to the travel time theory. PhD
thesis, Universit`a degli Studi di Trento (2017)