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Genetic code
&
Mutations:
t-RNA
&
Translation process
GENETIC CODE
• The change in nucleic acids (genetic material) were
responsible for change in amino acids in proteins.
• the proposition and deciphering of genetic code were
most challenging. identifying (something).
GENETIC CODE
• The process of translation requires transfer of genetic
information.. M-RNA to Proteins,,,
•
• Neither does any complementarity exist between
nucleotides and amino acids…
GENETIC CODE
• The change in nucleic acids (genetic material) were
responsible for change in amino acids in proteins.
• The proposition and deciphering of genetic code were
most challenging. identifying (something).
• To understanding of genetic code require involvement of
scientists from several disciplines –
• physicists,
• organic chemists,
• biochemists
• geneticists
George Gamow
• He argued that since there are only 4 bases and if they
have to code for 20 amino acids.
• In order to code for all the 20 amino acids, the code
should be made up of three nucleotides.
• Combination of 43 (4 × 4 × 4) would generate 64
codons.
Har Gobind Khorana..
• He developed chemical method for instrumental
synthesis of RNA molecules..
• with defined combinations of bases (homopolymers
and copolymers).
Father of genetic code…(Nobel prize in 1968)?
• Marshall Nirenberg’s cell-free system for protein
synthesis..
• Finally helped the code to be deciphered..
• .
• Severo Ochoa: Severo Ochoa enzyme (polynucleotide
phosphorylase).
• He developed enzymatic method for RNA synthesis.
The salient features of genetic code:
• (i) The codon is triplet. Total 64 codons.
• There are 61 codons code for amino acids..
• 3 codons do not code for any amino acids, they
function as stop codons.
• (ii) One codon codes for only one amino acid, hence, it is
unambiguous and specific.
ALANINE
• (iii) Some amino acids are coded by more than
one codon, hence the code is degenerate.
• (iii) Some amino acids are coded by more than one
codon, hence the code is degenerate.
• Tryptophan (UGG)
• Methionine (UAG)
• Phenylalanine (UUU,UUC)
• Aspartic acid (GAU, GAC)
• Glutamic acid (GAA, GAG)
• Lysine (AAA, AAG)
• Tyrosine (UAU, UAC)
No of codon each
amino acid is: 2
No of codon each amino acid is: 1
• Isoleucine (AUU, AUC, AUA)
• Valine
• Proline
• Threonine
• Alanine
• Glycine
• Leucine,
• Arginine
• Serine
No.of codon each amino acid
is: 3
No.of codon each amino acid is: 4
No of codon each amino acid is: 6
• (iv) The codon is read in mRNA in a contiguous fashion.
There are no punctuations.
• (v) The code is nearly universal: for example, from
bacteria to human.
• UUU would code for Phenylalanine (phe).
• Some exceptions to this rule have been found in
Mitochondrial codons, and in Some protozoans.
• .
• (vi) AUG has dual functions. It codes for Methionine
(met) , and it also act as initiator codon.
The genetic code is non overlapping,
i.e.,the adjacent codons do not
overlap
• (i) The codon is triplet. 61 codons code for amino acids and 3 codons do not
code for any amino acids, hence they function as stop codons.
• (ii) One codon codes for only one amino acid, hence, it is unambiguous and
specific.
• (iii) Some amino acids are coded by more than one codon, hence the code is
degenerate.
• (iv) The codon is read in mRNA in a contiguous fashion. There are no
punctuations.
• (v) The code is nearly universal: for example, from bacteria to human. Some
exceptions to this rule have been found in mitochondrial codons, and in some
protozoans.
• (vi) AUG has dual functions. It codes for Methionine (met) , and it also act as
initiator codon.
Gln:
Glutamine
ASN:
Asparagine
ASP: Aspartic
acid,
Glu: Glutamic
acid
Cys: cysteine
• A mutation is a change that occurs in DNA
sequence.
• The term mutation coined by: Hugo devries.
Point mutations and Frame shift mutations
• Point mutations happen when there is a
replacement of one base pair from another.
Point mutations:
• Point Mutations: arise due to changes in single
base pair in DNA.
Example: Sickle cell anemia;
Sickle cell anemia;
• Single base substitution at sixth codon of beta
globin gene form GAG (Glutamic acid) to GUG
(Valine).
Sickle cell anemia
• Frameshift mutations: occur when there is
an insertion or deletion of the base pairs from the
DNA sequence.
• Frame shift mutations: 1).insertion 2).Deletion..
Frame shift insertion mutations
• RAM HAS RED CAP
• RAM HAS BRE DCA P
• RAM HAS BIR EDC AP
• RAM HAS BIG RED CAP.
Frame shift insertion mutations
• Insertion of one or two bases changes the reading
frame from the point of insertion..
• Insertion of three or its multiple bases (OR) one or
multiple codons reading frame remains unaltered from
that point of insertion.
Frame shift Deletion mutations
• RAM HAS RED CAP
• RAM HAS EDC AP
• RAM HAS DCA P
• RAM HAS CAP
Frame shift Deletion mutations
• Deletion of one or two bases changes the reading
frame from the point of Deletion..
• Deletion of three or its multiple bases (OR) one or
multiple codons reading frame remains unaltered from
that point of Deletion.
• r-RNA : 80%
• t-RNA: 10-15%
• m-RNA: 1-2%
t-RNA or Adaptor
tRNA– the Adapter Molecule
Dihydrouridine
loop..
It is binding
site of amino
acyl t-RNA
synthetase
enzyme
Pseudouridine
loop
involved in
binding of
ribosomes
Dihydrouridine loop..
Pseudouridine loop
• Francis Crick postulated the presence of an adapter
molecule.
• t-RNA on one hand read the code and on other hand
would bind to specific amino acids.
• tRNA has an anticodon loop that has bases
complementary to the codon of m-RNA.
• t-RNA has an amino acid acceptor end to which it binds
to amino acids.
• The tRNA, then called sRNA (soluble RNA).
• tRNA is also called soluble RNA because it is soluble in
1M (molar) NaCl.
• For initiation of translation, there is another specific
tRNA that is referred to as initiator tRNA.
• There are no tRNAs for stop codons.
• The secondary structure of tRNA has been depicted that
looks like a clover -leaf.
• In actual structure (Tertiarty) the tRNA is a compact
molecule which looks like inverted L.
Translation
Translation
• Translation refers to the process of polymerisation of
amino acids to form a polypeptide..
• The order and sequence of amino acids are defined by
the sequence of bases in the mRNA…
Translation
• The amino acids are joined by a bond which is known as
a peptide bond.
• Formation of a peptide bond requires energy.
Translation
• The first phase itself amino acids are activated in the
presence of ATP.
• Activated amino acids linked to their cognate tRNA .
• This process commonly called as charging of tRNA or
amino-acylation of tRNA.
(related)
UAC
Translation
• Initiation
• Elongation
• Termination
Initiation
• The cellular factory responsible for synthesising
proteins is the ribosome.
• The ribosome consists of structural RNAs and about 80
different proteins.
Initiation
• When the small subunit (30s) binds to mRNA, at start
codon the process of translation of the mRNA to
protein begins.
• For initiation, the ribosome binds to the mRNA at the
start codon (AUG)…
• and followed by the base pairing of AUG with the
initiator tRNA.
Initiation
• Elongation:
• The ribosome proceeds to the elongation phase of
protein synthesis.
• During these phase charged-tRNAs, bind to the
appropriate codon in mRNA by forming
complementary base pairs with the tRNA anticodon.
Elongation:
• There are two sites in the large subunit,..
• The charged amino acids close enough to each other
the peptide bond formed between them.
Elongation:
• The ribosome also acts as a catalyst (23S rRNA in
bacteria is the enzyme- ribozyme) for the formation
of peptide bond.
• 23S rRNA present in 50s subunit of prokaryotes.
Elongation:
Termination
• The ribosome moves from codon to codon along the
mRNA.
• Amino acids are added one by one, translated into
Polypeptide sequences dictated by DNA and represented
by mRNA.
Termination
• At the end, a release factor binds to the stop codon,
terminating translation and releasing the complete
polypeptide from the ribosome.
Untranslated regions (UTR).
The UTRs are present at both 5' -end (before start codon) and at 3'
-end (after stop codon).
They are required for efficient translation process.
UTR
• A translational unit in mRNA is the sequence of RNA
that is flanked by the start codon (AUG) and the stop
codon and codes for a polypeptide.
• An mRNA also has some additional sequences that
are not translated and are referred as untranslated
regions (UTR).
• In prokaryotes the initiator t-RNA is tRNAfmet.
• The methionine is formulated.
• Two site in large subunit of ribosome
• A site (Amino acyl site)
• P site (Peptidyl site)
Peptidyl transferase
• Peptide bond formation between amino acid
during translation catalysed by Peptidyl
transferase.
• 23SrRNA and 28SrRNA perform this function
therefore they act as Ribozyme.
• What would happen if in a gene encoding a polypeptide of
50 amino acids, 25th codon (UAU) is mutated to UAA?
• 1) A polypeptide of 24 amino acids will be formed.
Regulation of gene expression
• Regulation of gene expression occur at various levels.
• Gene expression results in the formation of a
polypeptide…
In eukaryotes, the Gene regulated at
• (i) transcriptional level (formation of primary transcript).
• (ii) processing level (regulation of splicing),
• (iii) transport of mRNA from nucleus to the cytoplasm.
• (iv) translational level.
• The metabolic, physiological or environmental
conditions that regulate the expression of genes.
• The development and differentiation of embryo into
adult organisms are…..
• also a result of the coordinated regulation of expression
of several sets of genes
Dr. HarinathaReddy Aswartha
Assistant professor
Department of Microbiology
ANDHRAPRADESH
INDIA

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Genetic code and translation..

  • 2. GENETIC CODE • The change in nucleic acids (genetic material) were responsible for change in amino acids in proteins. • the proposition and deciphering of genetic code were most challenging. identifying (something).
  • 3.
  • 4. GENETIC CODE • The process of translation requires transfer of genetic information.. M-RNA to Proteins,,, • • Neither does any complementarity exist between nucleotides and amino acids…
  • 5. GENETIC CODE • The change in nucleic acids (genetic material) were responsible for change in amino acids in proteins. • The proposition and deciphering of genetic code were most challenging. identifying (something).
  • 6. • To understanding of genetic code require involvement of scientists from several disciplines – • physicists, • organic chemists, • biochemists • geneticists
  • 7. George Gamow • He argued that since there are only 4 bases and if they have to code for 20 amino acids. • In order to code for all the 20 amino acids, the code should be made up of three nucleotides. • Combination of 43 (4 × 4 × 4) would generate 64 codons.
  • 8. Har Gobind Khorana.. • He developed chemical method for instrumental synthesis of RNA molecules.. • with defined combinations of bases (homopolymers and copolymers).
  • 9. Father of genetic code…(Nobel prize in 1968)? • Marshall Nirenberg’s cell-free system for protein synthesis.. • Finally helped the code to be deciphered.. • .
  • 10. • Severo Ochoa: Severo Ochoa enzyme (polynucleotide phosphorylase). • He developed enzymatic method for RNA synthesis.
  • 11. The salient features of genetic code: • (i) The codon is triplet. Total 64 codons. • There are 61 codons code for amino acids.. • 3 codons do not code for any amino acids, they function as stop codons.
  • 12.
  • 13. • (ii) One codon codes for only one amino acid, hence, it is unambiguous and specific. ALANINE
  • 14. • (iii) Some amino acids are coded by more than one codon, hence the code is degenerate.
  • 15. • (iii) Some amino acids are coded by more than one codon, hence the code is degenerate. • Tryptophan (UGG) • Methionine (UAG) • Phenylalanine (UUU,UUC) • Aspartic acid (GAU, GAC) • Glutamic acid (GAA, GAG) • Lysine (AAA, AAG) • Tyrosine (UAU, UAC) No of codon each amino acid is: 2 No of codon each amino acid is: 1
  • 16. • Isoleucine (AUU, AUC, AUA) • Valine • Proline • Threonine • Alanine • Glycine • Leucine, • Arginine • Serine No.of codon each amino acid is: 3 No.of codon each amino acid is: 4 No of codon each amino acid is: 6
  • 17. • (iv) The codon is read in mRNA in a contiguous fashion. There are no punctuations.
  • 18. • (v) The code is nearly universal: for example, from bacteria to human. • UUU would code for Phenylalanine (phe). • Some exceptions to this rule have been found in Mitochondrial codons, and in Some protozoans. • .
  • 19. • (vi) AUG has dual functions. It codes for Methionine (met) , and it also act as initiator codon.
  • 20. The genetic code is non overlapping, i.e.,the adjacent codons do not overlap
  • 21. • (i) The codon is triplet. 61 codons code for amino acids and 3 codons do not code for any amino acids, hence they function as stop codons. • (ii) One codon codes for only one amino acid, hence, it is unambiguous and specific. • (iii) Some amino acids are coded by more than one codon, hence the code is degenerate. • (iv) The codon is read in mRNA in a contiguous fashion. There are no punctuations. • (v) The code is nearly universal: for example, from bacteria to human. Some exceptions to this rule have been found in mitochondrial codons, and in some protozoans. • (vi) AUG has dual functions. It codes for Methionine (met) , and it also act as initiator codon.
  • 23.
  • 24. • A mutation is a change that occurs in DNA sequence. • The term mutation coined by: Hugo devries.
  • 25. Point mutations and Frame shift mutations • Point mutations happen when there is a replacement of one base pair from another.
  • 26. Point mutations: • Point Mutations: arise due to changes in single base pair in DNA. Example: Sickle cell anemia;
  • 27. Sickle cell anemia; • Single base substitution at sixth codon of beta globin gene form GAG (Glutamic acid) to GUG (Valine).
  • 29. • Frameshift mutations: occur when there is an insertion or deletion of the base pairs from the DNA sequence. • Frame shift mutations: 1).insertion 2).Deletion..
  • 30. Frame shift insertion mutations • RAM HAS RED CAP • RAM HAS BRE DCA P • RAM HAS BIR EDC AP • RAM HAS BIG RED CAP.
  • 31. Frame shift insertion mutations • Insertion of one or two bases changes the reading frame from the point of insertion.. • Insertion of three or its multiple bases (OR) one or multiple codons reading frame remains unaltered from that point of insertion.
  • 32. Frame shift Deletion mutations • RAM HAS RED CAP • RAM HAS EDC AP • RAM HAS DCA P • RAM HAS CAP
  • 33. Frame shift Deletion mutations • Deletion of one or two bases changes the reading frame from the point of Deletion.. • Deletion of three or its multiple bases (OR) one or multiple codons reading frame remains unaltered from that point of Deletion.
  • 34.
  • 35. • r-RNA : 80% • t-RNA: 10-15% • m-RNA: 1-2%
  • 37. tRNA– the Adapter Molecule Dihydrouridine loop.. It is binding site of amino acyl t-RNA synthetase enzyme Pseudouridine loop involved in binding of ribosomes Dihydrouridine loop.. Pseudouridine loop
  • 38. • Francis Crick postulated the presence of an adapter molecule. • t-RNA on one hand read the code and on other hand would bind to specific amino acids.
  • 39. • tRNA has an anticodon loop that has bases complementary to the codon of m-RNA. • t-RNA has an amino acid acceptor end to which it binds to amino acids.
  • 40. • The tRNA, then called sRNA (soluble RNA). • tRNA is also called soluble RNA because it is soluble in 1M (molar) NaCl. • For initiation of translation, there is another specific tRNA that is referred to as initiator tRNA. • There are no tRNAs for stop codons.
  • 41. • The secondary structure of tRNA has been depicted that looks like a clover -leaf. • In actual structure (Tertiarty) the tRNA is a compact molecule which looks like inverted L.
  • 43. Translation • Translation refers to the process of polymerisation of amino acids to form a polypeptide.. • The order and sequence of amino acids are defined by the sequence of bases in the mRNA…
  • 44. Translation • The amino acids are joined by a bond which is known as a peptide bond. • Formation of a peptide bond requires energy.
  • 45. Translation • The first phase itself amino acids are activated in the presence of ATP. • Activated amino acids linked to their cognate tRNA . • This process commonly called as charging of tRNA or amino-acylation of tRNA. (related) UAC
  • 47. Initiation • The cellular factory responsible for synthesising proteins is the ribosome. • The ribosome consists of structural RNAs and about 80 different proteins.
  • 48. Initiation • When the small subunit (30s) binds to mRNA, at start codon the process of translation of the mRNA to protein begins.
  • 49. • For initiation, the ribosome binds to the mRNA at the start codon (AUG)… • and followed by the base pairing of AUG with the initiator tRNA.
  • 51. • Elongation: • The ribosome proceeds to the elongation phase of protein synthesis. • During these phase charged-tRNAs, bind to the appropriate codon in mRNA by forming complementary base pairs with the tRNA anticodon.
  • 52. Elongation: • There are two sites in the large subunit,.. • The charged amino acids close enough to each other the peptide bond formed between them.
  • 53. Elongation: • The ribosome also acts as a catalyst (23S rRNA in bacteria is the enzyme- ribozyme) for the formation of peptide bond. • 23S rRNA present in 50s subunit of prokaryotes.
  • 55. Termination • The ribosome moves from codon to codon along the mRNA. • Amino acids are added one by one, translated into Polypeptide sequences dictated by DNA and represented by mRNA.
  • 56. Termination • At the end, a release factor binds to the stop codon, terminating translation and releasing the complete polypeptide from the ribosome.
  • 57. Untranslated regions (UTR). The UTRs are present at both 5' -end (before start codon) and at 3' -end (after stop codon). They are required for efficient translation process.
  • 58. UTR • A translational unit in mRNA is the sequence of RNA that is flanked by the start codon (AUG) and the stop codon and codes for a polypeptide. • An mRNA also has some additional sequences that are not translated and are referred as untranslated regions (UTR).
  • 59. • In prokaryotes the initiator t-RNA is tRNAfmet. • The methionine is formulated. • Two site in large subunit of ribosome • A site (Amino acyl site) • P site (Peptidyl site)
  • 60. Peptidyl transferase • Peptide bond formation between amino acid during translation catalysed by Peptidyl transferase. • 23SrRNA and 28SrRNA perform this function therefore they act as Ribozyme.
  • 61.
  • 62. • What would happen if in a gene encoding a polypeptide of 50 amino acids, 25th codon (UAU) is mutated to UAA? • 1) A polypeptide of 24 amino acids will be formed.
  • 63. Regulation of gene expression • Regulation of gene expression occur at various levels. • Gene expression results in the formation of a polypeptide…
  • 64. In eukaryotes, the Gene regulated at • (i) transcriptional level (formation of primary transcript). • (ii) processing level (regulation of splicing), • (iii) transport of mRNA from nucleus to the cytoplasm. • (iv) translational level.
  • 65. • The metabolic, physiological or environmental conditions that regulate the expression of genes.
  • 66. • The development and differentiation of embryo into adult organisms are….. • also a result of the coordinated regulation of expression of several sets of genes
  • 67.
  • 68. Dr. HarinathaReddy Aswartha Assistant professor Department of Microbiology ANDHRAPRADESH INDIA