Oncogenic Ras promotes the survival of cancer cells detached from the extracellular matrix (ECM) through distinct downstream pathways. Ras activates phosphatidylinositol 3-kinase (PI3K) signaling to regulate metabolism in detached cells, but surprisingly does not do so through Akt. Instead, Ras utilizes serum and glucocorticoid-regulated kinase 1 (SGK1) to promote ATP generation. Additionally, Ras blocks anoikis or detachment-induced apoptosis by reducing expression of the phosphatase PHLPP1, which activates p38 MAPK to induce anoikis. Thus, Ras facilitates survival of detached cancer cells through divergent effectors to regulate metabolism and anoikis.
Vitamin K is important for blood clotting and bone formation. It is synthesized by plants and bacteria, with the main forms being phylloquinone (from plants) and menaquinones (from bacteria). Humans obtain vitamin K primarily through dietary sources like green leafy vegetables, which contain phylloquinone, as well as from bacterial synthesis in the gut. However, vitamin K absorption can be limited, with only about 10% being absorbed from boiled spinach.
The document discusses several key concepts in molecular genetics including:
1. The central dogma which states that DNA is transcribed into RNA and then translated into protein.
2. Complementary base pairing rules where A pairs with T and C pairs with G in DNA, and A pairs with U in RNA.
3. Translation is the process where mRNA is used to produce proteins using codons of three nucleotides that code for amino acids.
4. Mutations can occur in DNA and affect proteins, including frameshift, point, silent, missense, and nonsense mutations.
The document summarizes the AKT/PKB signaling pathway. It discusses that AKT/PKB promotes metabolism, proliferation, and cell survival as an intracellular signal transduction pathway. Key proteins in the pathway are AKT/PKB and PI3K. The pathway regulates processes like protein synthesis, cell survival, cell proliferation, and glucose metabolism. Dysregulation of the pathway through mutations can contribute to cancer due to AKT/PKB's role in regulating critical cellular functions, making it a potential therapeutic target.
Effect of Nutritional Factors on Regulation of Gene Expressionsohinisc14
Nutritional factors from fish feed can modify the expression of specific genes in fish related to metabolic pathways. High levels of proteins, carbohydrates, lipids, vitamins and minerals upregulate genes involved in digestion, growth, and metabolism of the corresponding macronutrients. For example, a high-carbohydrate diet increases expression of genes for starch-digesting enzymes, while essential amino acids increase growth factor genes. Nutrigenomics research uses techniques like microarray analysis and reverse transcription PCR to study how nutrients regulate whole networks of genes and cellular processes in fish. Understanding these gene expression changes can help design optimized fish feeds that improve production and welfare.
This document describes a study that investigated the seminal plasma proteome of Holstein bulls with low and high sperm freezability. Label-free mass spectrometry identified 1,445 seminal plasma proteins. There were 338 proteins differentially expressed between bulls with low and high freezability. Specific proteins were identified as markers of each phenotype, with BSP5 and seminal ribonuclease associated with high freezability and spermadhesin-1, gelsolin, and peroxiredoxin-5 associated with low freezability. Regression models found sperm freezability scores were related to levels of peroxiredoxin-5, spermadhesin-1, and their interaction. This research provides insights
Oncogenic Ras promotes the survival of cancer cells detached from the extracellular matrix (ECM) through distinct downstream pathways. Ras activates phosphatidylinositol 3-kinase (PI3K) signaling to regulate metabolism in detached cells, but surprisingly does not do so through Akt. Instead, Ras utilizes serum and glucocorticoid-regulated kinase 1 (SGK1) to promote ATP generation. Additionally, Ras blocks anoikis or detachment-induced apoptosis by reducing expression of the phosphatase PHLPP1, which activates p38 MAPK to induce anoikis. Thus, Ras facilitates survival of detached cancer cells through divergent effectors to regulate metabolism and anoikis.
Vitamin K is important for blood clotting and bone formation. It is synthesized by plants and bacteria, with the main forms being phylloquinone (from plants) and menaquinones (from bacteria). Humans obtain vitamin K primarily through dietary sources like green leafy vegetables, which contain phylloquinone, as well as from bacterial synthesis in the gut. However, vitamin K absorption can be limited, with only about 10% being absorbed from boiled spinach.
The document discusses several key concepts in molecular genetics including:
1. The central dogma which states that DNA is transcribed into RNA and then translated into protein.
2. Complementary base pairing rules where A pairs with T and C pairs with G in DNA, and A pairs with U in RNA.
3. Translation is the process where mRNA is used to produce proteins using codons of three nucleotides that code for amino acids.
4. Mutations can occur in DNA and affect proteins, including frameshift, point, silent, missense, and nonsense mutations.
The document summarizes the AKT/PKB signaling pathway. It discusses that AKT/PKB promotes metabolism, proliferation, and cell survival as an intracellular signal transduction pathway. Key proteins in the pathway are AKT/PKB and PI3K. The pathway regulates processes like protein synthesis, cell survival, cell proliferation, and glucose metabolism. Dysregulation of the pathway through mutations can contribute to cancer due to AKT/PKB's role in regulating critical cellular functions, making it a potential therapeutic target.
Effect of Nutritional Factors on Regulation of Gene Expressionsohinisc14
Nutritional factors from fish feed can modify the expression of specific genes in fish related to metabolic pathways. High levels of proteins, carbohydrates, lipids, vitamins and minerals upregulate genes involved in digestion, growth, and metabolism of the corresponding macronutrients. For example, a high-carbohydrate diet increases expression of genes for starch-digesting enzymes, while essential amino acids increase growth factor genes. Nutrigenomics research uses techniques like microarray analysis and reverse transcription PCR to study how nutrients regulate whole networks of genes and cellular processes in fish. Understanding these gene expression changes can help design optimized fish feeds that improve production and welfare.
This document describes a study that investigated the seminal plasma proteome of Holstein bulls with low and high sperm freezability. Label-free mass spectrometry identified 1,445 seminal plasma proteins. There were 338 proteins differentially expressed between bulls with low and high freezability. Specific proteins were identified as markers of each phenotype, with BSP5 and seminal ribonuclease associated with high freezability and spermadhesin-1, gelsolin, and peroxiredoxin-5 associated with low freezability. Regression models found sperm freezability scores were related to levels of peroxiredoxin-5, spermadhesin-1, and their interaction. This research provides insights
MICRONUTRIENTS IN MALE INFERTILITY BY DR SHASHWAT JANIDR SHASHWAT JANI
This document discusses male infertility and the role of micronutrients. It begins by introducing Dr. Shashwat Jani and his credentials. It then summarizes several studies that show a relationship between micronutrient deficiencies and male infertility. Specifically, it discusses how reactive oxygen species (ROS) produced by inadequate antioxidant levels can damage sperm cells. The document provides examples of antioxidants like carnitine, coenzyme Q10, and lycopene that have been shown in clinical trials to improve semen quality parameters and fertility outcomes when supplemented.
The PTEN and PI3-Kinase Pathway in Cancer pptBernard Bahaah
The document presents information on PTEN and the PI3-kinase pathway in cancer. It discusses how PTEN acts as a tumor suppressor by negatively regulating the PI3-kinase pathway, which promotes cell growth and survival. Mutations or deletions of the PTEN gene are common in many cancer types as they lead to overactivation of the PI3-kinase pathway. The document outlines the signaling events in the PI3-kinase pathway, how PTEN regulates it, additional functions of PTEN, and potential cancer therapeutics that target this pathway.
The document summarizes several bone proteins found in the extracellular matrix. It discusses the roles of osteocalcin, osteopontin, osteonectin, BMP, and other proteins in bone formation, mineralization, and regulation of cellular activity. Osteocalcin is involved in mineralization and glucose metabolism. Osteopontin anchors osteoclasts to bone and regulates inflammation. Osteonectin binds tightly to hydroxyapatite and regulates mineralization. BMPs induce bone and cartilage formation through signaling pathways.
Uncovering novel candidate genes for pyridoxine-responsive epilepsy in a cons...Golden Helix Inc
This document summarizes Hilal Al Shekaili's work on characterizing the genetic cause of pyridoxine-dependent epilepsy (PDE) in an Omani family. [1] Runs of homozygosity mapping and whole-exome sequencing identified two candidate genes involved in vitamin transport and neuropeptide processing. [2] Further studies are planned to validate the candidate genes and recruit additional families. [3] Identifying new PDE genes could improve treatment and fill knowledge gaps in pyridoxine metabolism.
Genetic Basis of Pyridoxine-Responsive Neonatal Epilepsy in Consanguineous Fa...Delaina Hawkins
Hilal Al-Shekaili is a PhD student at the University of British Columbia who conducts research in rare, autosomal recessive disorders, specifically pyridoxine-responsive epileptic encephalopathies (PREE). PREE is often characterized by recurrent seizures in the prenatal, neonatal, or postnatal period, which are typically resistant to conventional anticonvulsant treatment but are well-controlled by the administration of pyridoxine (vitamin B6). Hilal and his colleagues at UBC are undertaking a research project to identify novel genetic causes in unexplained forms of pyridoxine-dependent epilepsy (PDE), a special type of PREE with an estimated incidence of 1:20,000 to 1:750,000. In most affected infants, PDE is caused by mutations in the antiquitin gene (ALDH7A1) and subsequent inactivation of α-aminoadipic semialdehyde dehydrogenase (antiquitin, ATQ).
Currently, ALDH7A1 is the only gene for which mutations are known to underlie PDE. However, locus heterogeneity has been reported in some families and other genes seem to be involved. Nearly 5% of children with a typical clinical picture of PDE harbor no detectable mutation of ALDH7A1. Identifying causative genes in such families will likely lead to improved treatment for these patients and help unravel much of the unknown about pyridoxine metabolism in the human body.
In this webinar, Hilal will cover how he and his team used whole-genome SNP genotyping, genome-wide runs of homozygosity (RoH) mapping using SVS, and whole-exome sequencing to characterize the genetic defect underlying PREE in a consanguineous Omani Arab family with two affected children who have a PDE-like clinical picture but negative ATQ biomarkers.
Recombinant human erythropoietin was developed to treat anemia. It was first isolated from urine in 1977 and its gene was cloned in 1985, allowing industrial production. This paved the way for FDA approval in 1989 for use in chronic renal patients on dialysis to increase red blood cell production. It is now used to treat anemia associated with renal failure, cancer, prematurity, and HIV. It can also support erythropoiesis after chemotherapy or transplants and increase hemoglobin levels before surgery or for athletes. Current research continues to explore new applications of recombinant human erythropoietin.
This document discusses protein tyrosine phosphorylation and protein kinases. It provides information on:
1) There are over 500 protein kinases in the human genome that phosphorylate proteins on serine, threonine, or tyrosine residues and regulate many cellular processes like cell division and apoptosis.
2) Protein kinases are classified into groups like ACG, CaMK, CMGC, and PTK. Receptor PTKs include receptors for EGF, insulin, and PDGF while non-receptor PTKs include Src and Abl.
3) Second messengers like cAMP and cGMP activate protein kinases like PKA and PKG which phosphorylate downstream targets and regulate processes like
Proteins are the major components of the body and are composed of amino acids. There are over 50,000 different proteins in the human body, each with a unique structure and function. Proteins serve many essential roles such as structure, movement, transport, regulation, and protection. They exhibit properties like solubility, ionization, hydration, and buffering capacity that allow them to perform their diverse functions. Proteins can be globular or fibrous in shape, and their molecular masses range from 5,500 to over 2 million Daltons depending on the number of amino acids.
This document discusses several articles about proteins and their roles. It first provides background on proteins and their functions as enzymes, antibodies, channels and receptors. It then summarizes two research articles. The first article finds that the RAB35 protein, which normally regulates protein transport, can also drive cancer formation when mutated. The second article details research that used x-ray crystallography to determine the atomic structure of the HIV capsid protein, which helps HIV replicate and could inform new antiviral drugs. The document concludes by discussing the medical applications of studying protein structures.
Protein is composed of amino acids and is necessary for proper growth and function of the human body. It has many important biological functions including structural, enzymatic, transport, motile, regulatory, and storage functions. There are different types and levels of protein structure. Changes in protein shape can cause diseases like prion diseases and Creutzfeldt-Jakob disease which affect the nervous system. These diseases are difficult to diagnose and are generally fatal.
Sequence Characterization of Coding Regions of the Myostatin Gene (GDF8) from...Wani Ahad
The Bakerwal breed of goat in Kashmir valley is a good meat purpose breed of goat. That attains
an appreciable body weight under a low input production system. As these goats are mainly
reared by Gujjar and Bakarwal tribes of the J & K state, so they usually are fed with the weeds,
herbs, shrubs and grasses of pastures that will otherwise go waste. These goats constitute the
main livestock wealth. With the good productive and reproductive potential, it makes these animals
an important animal protein source for developing countries like India. The myostatin gene
(GDF8) is important in the physiology of stock animals because its product produces a direct effect
on muscle development and consequently also on meat production. The myostatin sequence is
known in several mammalian species and shows a high degree of amino acid sequence conservation,
although several alterations in the intron and exon regions have been identified. The objective
of our work is to characterize the myostatin coding regions using gene sequencing and polymerase
chain reaction methods of Capra hircus (Bakerwal breed) and to compare them with the
Ovis aries and other livestock species of animal, looking for variations in nucleotide and protein
sequences. As mutations in the myostatin gene can inactivate its expression and result in a
non-functional protein, which leads to increase in muscle growth in many species. In this way, we are able to identify 3 alterations on the presumed myostatin protein sequence as compared to non
double-muscled ovine sequences.
Sequence Characterization of Coding Regions of the Myostatin Gene (GDF8) from...Wani Ahad
The Bakerwal breed of goat in Kashmir valley is a good meat purpose breed of goat. That attains
an appreciable body weight under a low input production system. As these goats are mainly
reared by Gujjar and Bakarwal tribes of the J & K state, so they usually are fed with the weeds,
herbs, shrubs and grasses of pastures that will otherwise go waste. These goats constitute the
main livestock wealth. With the good productive and reproductive potential, it makes these animals
an important animal protein source for developing countries like India. The myostatin gene
(GDF8) is important in the physiology of stock animals because its product produces a direct effect
on muscle development and consequently also on meat production. The myostatin sequence is
known in several mammalian species and shows a high degree of amino acid sequence conservation,
although several alterations in the intron and exon regions have been identified. The objective
of our work is to characterize the myostatin coding regions using gene sequencing and polymerase
chain reaction methods of Capra hircus (Bakerwal breed) and to compare them with the
Ovis aries and other livestock species of animal, looking for variations in nucleotide and protein
sequences. As mutations in the myostatin gene can inactivate its expression and result in a
non-functional protein, which leads to increase in muscle growth in many species. In this way, weare able to identify 3 alterations on the presumed myostatin protein sequence as compared to non
double-muscled ovine sequences.
Labeorohita, is a fish of the carp family Cyprinidea, found commonly in rivers and freshwater lakes in and around South Asia and South-East Asia. IT is used as a major diet all over India. Hence its culture is done at a heavy ratio accordance to other fishes. Translationally Controlled Tumor Protein found in Labeorohitahas a very similar polypeptide chain accordance with human. Human TCTP has a great effect on growth. Due to the unavailability of the Tertiary structure of TCTP of Labeorohita, clear functional activity is unable to detect. The following work is a try to build a tertiary structure and detecting its active sites by docking it with different active proteins.
Proteins are composed of chains of amino acids and perform many essential functions in the body. There are 20 amino acids that make up proteins. Proteins can be classified based on their composition, shape, and function. They include structural proteins like collagen and keratin, transport proteins like hemoglobin, and catalytic proteins like enzymes. Amino acids are the building blocks of proteins and all contain an amino group and a carboxyl group. Essential amino acids cannot be synthesized in the body and must be obtained through diet.
This document is an independent study thesis submitted by Shelby Kratt to partially fulfill requirements for an independent study in biology. The thesis aims to further investigate the role of arginine kinase (AK) in the bacterium Myxococcus xanthus. The introduction provides background on phosphagen kinases, including their role in ATP buffering. It describes the arginine kinase lineage and discusses recent findings of bacterial arginine kinases, likely acquired via horizontal gene transfer. Previous work found that deletion of the AK gene in M. xanthus increased stress sensitivity and affected development. The thesis will transform the M. xanthus Δark mutant with the original M. xanthus AK gene and a horseshoe crab
Protein is a macronutrient that is essential to building muscle mass. It is commonly found in animal products, though is also present in other sources, such as nuts and legumes. There are three macronutrients: protein, fats and carbohydrates. Macronutrients provide calories, or energy.
This document discusses peptidylarginine deiminases (PADs), a family of enzymes involved in post-translational protein modification through citrullination. There are five isozymes of PADs in humans (PAD1-4, PAD6) with varying tissue distribution and substrates. PADs play roles in apoptosis, structural support of tissues, and immune responses through citrullination of proteins like histones and keratins. Abnormal PAD activity can lead to diseases like rheumatoid arthritis, multiple sclerosis, and some cancers. Several inhibitors of PADs have been studied as potential therapeutics for these diseases, including CI-amidine and threonine-aspartate-F-
This document discusses epigenetic modifications of proteins. It begins by defining epigenetics and describing how epigenetic modifications can alter gene expression without changing DNA sequences. It then focuses on histone modifications like acetylation, methylation, ubiquitination, and phosphorylation. The document also examines epigenetic modifications of specific proteins - Sox2, CCAAT/enhancer binding protein a (C/EBPa), and caveolae associated proteins. It provides details on studies that analyzed the methylation of promoters for these genes in cancer cell lines and patient samples.
MICRONUTRIENTS IN MALE INFERTILITY BY DR SHASHWAT JANIDR SHASHWAT JANI
This document discusses male infertility and the role of micronutrients. It begins by introducing Dr. Shashwat Jani and his credentials. It then summarizes several studies that show a relationship between micronutrient deficiencies and male infertility. Specifically, it discusses how reactive oxygen species (ROS) produced by inadequate antioxidant levels can damage sperm cells. The document provides examples of antioxidants like carnitine, coenzyme Q10, and lycopene that have been shown in clinical trials to improve semen quality parameters and fertility outcomes when supplemented.
The PTEN and PI3-Kinase Pathway in Cancer pptBernard Bahaah
The document presents information on PTEN and the PI3-kinase pathway in cancer. It discusses how PTEN acts as a tumor suppressor by negatively regulating the PI3-kinase pathway, which promotes cell growth and survival. Mutations or deletions of the PTEN gene are common in many cancer types as they lead to overactivation of the PI3-kinase pathway. The document outlines the signaling events in the PI3-kinase pathway, how PTEN regulates it, additional functions of PTEN, and potential cancer therapeutics that target this pathway.
The document summarizes several bone proteins found in the extracellular matrix. It discusses the roles of osteocalcin, osteopontin, osteonectin, BMP, and other proteins in bone formation, mineralization, and regulation of cellular activity. Osteocalcin is involved in mineralization and glucose metabolism. Osteopontin anchors osteoclasts to bone and regulates inflammation. Osteonectin binds tightly to hydroxyapatite and regulates mineralization. BMPs induce bone and cartilage formation through signaling pathways.
Uncovering novel candidate genes for pyridoxine-responsive epilepsy in a cons...Golden Helix Inc
This document summarizes Hilal Al Shekaili's work on characterizing the genetic cause of pyridoxine-dependent epilepsy (PDE) in an Omani family. [1] Runs of homozygosity mapping and whole-exome sequencing identified two candidate genes involved in vitamin transport and neuropeptide processing. [2] Further studies are planned to validate the candidate genes and recruit additional families. [3] Identifying new PDE genes could improve treatment and fill knowledge gaps in pyridoxine metabolism.
Genetic Basis of Pyridoxine-Responsive Neonatal Epilepsy in Consanguineous Fa...Delaina Hawkins
Hilal Al-Shekaili is a PhD student at the University of British Columbia who conducts research in rare, autosomal recessive disorders, specifically pyridoxine-responsive epileptic encephalopathies (PREE). PREE is often characterized by recurrent seizures in the prenatal, neonatal, or postnatal period, which are typically resistant to conventional anticonvulsant treatment but are well-controlled by the administration of pyridoxine (vitamin B6). Hilal and his colleagues at UBC are undertaking a research project to identify novel genetic causes in unexplained forms of pyridoxine-dependent epilepsy (PDE), a special type of PREE with an estimated incidence of 1:20,000 to 1:750,000. In most affected infants, PDE is caused by mutations in the antiquitin gene (ALDH7A1) and subsequent inactivation of α-aminoadipic semialdehyde dehydrogenase (antiquitin, ATQ).
Currently, ALDH7A1 is the only gene for which mutations are known to underlie PDE. However, locus heterogeneity has been reported in some families and other genes seem to be involved. Nearly 5% of children with a typical clinical picture of PDE harbor no detectable mutation of ALDH7A1. Identifying causative genes in such families will likely lead to improved treatment for these patients and help unravel much of the unknown about pyridoxine metabolism in the human body.
In this webinar, Hilal will cover how he and his team used whole-genome SNP genotyping, genome-wide runs of homozygosity (RoH) mapping using SVS, and whole-exome sequencing to characterize the genetic defect underlying PREE in a consanguineous Omani Arab family with two affected children who have a PDE-like clinical picture but negative ATQ biomarkers.
Recombinant human erythropoietin was developed to treat anemia. It was first isolated from urine in 1977 and its gene was cloned in 1985, allowing industrial production. This paved the way for FDA approval in 1989 for use in chronic renal patients on dialysis to increase red blood cell production. It is now used to treat anemia associated with renal failure, cancer, prematurity, and HIV. It can also support erythropoiesis after chemotherapy or transplants and increase hemoglobin levels before surgery or for athletes. Current research continues to explore new applications of recombinant human erythropoietin.
This document discusses protein tyrosine phosphorylation and protein kinases. It provides information on:
1) There are over 500 protein kinases in the human genome that phosphorylate proteins on serine, threonine, or tyrosine residues and regulate many cellular processes like cell division and apoptosis.
2) Protein kinases are classified into groups like ACG, CaMK, CMGC, and PTK. Receptor PTKs include receptors for EGF, insulin, and PDGF while non-receptor PTKs include Src and Abl.
3) Second messengers like cAMP and cGMP activate protein kinases like PKA and PKG which phosphorylate downstream targets and regulate processes like
Proteins are the major components of the body and are composed of amino acids. There are over 50,000 different proteins in the human body, each with a unique structure and function. Proteins serve many essential roles such as structure, movement, transport, regulation, and protection. They exhibit properties like solubility, ionization, hydration, and buffering capacity that allow them to perform their diverse functions. Proteins can be globular or fibrous in shape, and their molecular masses range from 5,500 to over 2 million Daltons depending on the number of amino acids.
This document discusses several articles about proteins and their roles. It first provides background on proteins and their functions as enzymes, antibodies, channels and receptors. It then summarizes two research articles. The first article finds that the RAB35 protein, which normally regulates protein transport, can also drive cancer formation when mutated. The second article details research that used x-ray crystallography to determine the atomic structure of the HIV capsid protein, which helps HIV replicate and could inform new antiviral drugs. The document concludes by discussing the medical applications of studying protein structures.
Protein is composed of amino acids and is necessary for proper growth and function of the human body. It has many important biological functions including structural, enzymatic, transport, motile, regulatory, and storage functions. There are different types and levels of protein structure. Changes in protein shape can cause diseases like prion diseases and Creutzfeldt-Jakob disease which affect the nervous system. These diseases are difficult to diagnose and are generally fatal.
Sequence Characterization of Coding Regions of the Myostatin Gene (GDF8) from...Wani Ahad
The Bakerwal breed of goat in Kashmir valley is a good meat purpose breed of goat. That attains
an appreciable body weight under a low input production system. As these goats are mainly
reared by Gujjar and Bakarwal tribes of the J & K state, so they usually are fed with the weeds,
herbs, shrubs and grasses of pastures that will otherwise go waste. These goats constitute the
main livestock wealth. With the good productive and reproductive potential, it makes these animals
an important animal protein source for developing countries like India. The myostatin gene
(GDF8) is important in the physiology of stock animals because its product produces a direct effect
on muscle development and consequently also on meat production. The myostatin sequence is
known in several mammalian species and shows a high degree of amino acid sequence conservation,
although several alterations in the intron and exon regions have been identified. The objective
of our work is to characterize the myostatin coding regions using gene sequencing and polymerase
chain reaction methods of Capra hircus (Bakerwal breed) and to compare them with the
Ovis aries and other livestock species of animal, looking for variations in nucleotide and protein
sequences. As mutations in the myostatin gene can inactivate its expression and result in a
non-functional protein, which leads to increase in muscle growth in many species. In this way, we are able to identify 3 alterations on the presumed myostatin protein sequence as compared to non
double-muscled ovine sequences.
Sequence Characterization of Coding Regions of the Myostatin Gene (GDF8) from...Wani Ahad
The Bakerwal breed of goat in Kashmir valley is a good meat purpose breed of goat. That attains
an appreciable body weight under a low input production system. As these goats are mainly
reared by Gujjar and Bakarwal tribes of the J & K state, so they usually are fed with the weeds,
herbs, shrubs and grasses of pastures that will otherwise go waste. These goats constitute the
main livestock wealth. With the good productive and reproductive potential, it makes these animals
an important animal protein source for developing countries like India. The myostatin gene
(GDF8) is important in the physiology of stock animals because its product produces a direct effect
on muscle development and consequently also on meat production. The myostatin sequence is
known in several mammalian species and shows a high degree of amino acid sequence conservation,
although several alterations in the intron and exon regions have been identified. The objective
of our work is to characterize the myostatin coding regions using gene sequencing and polymerase
chain reaction methods of Capra hircus (Bakerwal breed) and to compare them with the
Ovis aries and other livestock species of animal, looking for variations in nucleotide and protein
sequences. As mutations in the myostatin gene can inactivate its expression and result in a
non-functional protein, which leads to increase in muscle growth in many species. In this way, weare able to identify 3 alterations on the presumed myostatin protein sequence as compared to non
double-muscled ovine sequences.
Labeorohita, is a fish of the carp family Cyprinidea, found commonly in rivers and freshwater lakes in and around South Asia and South-East Asia. IT is used as a major diet all over India. Hence its culture is done at a heavy ratio accordance to other fishes. Translationally Controlled Tumor Protein found in Labeorohitahas a very similar polypeptide chain accordance with human. Human TCTP has a great effect on growth. Due to the unavailability of the Tertiary structure of TCTP of Labeorohita, clear functional activity is unable to detect. The following work is a try to build a tertiary structure and detecting its active sites by docking it with different active proteins.
Proteins are composed of chains of amino acids and perform many essential functions in the body. There are 20 amino acids that make up proteins. Proteins can be classified based on their composition, shape, and function. They include structural proteins like collagen and keratin, transport proteins like hemoglobin, and catalytic proteins like enzymes. Amino acids are the building blocks of proteins and all contain an amino group and a carboxyl group. Essential amino acids cannot be synthesized in the body and must be obtained through diet.
This document is an independent study thesis submitted by Shelby Kratt to partially fulfill requirements for an independent study in biology. The thesis aims to further investigate the role of arginine kinase (AK) in the bacterium Myxococcus xanthus. The introduction provides background on phosphagen kinases, including their role in ATP buffering. It describes the arginine kinase lineage and discusses recent findings of bacterial arginine kinases, likely acquired via horizontal gene transfer. Previous work found that deletion of the AK gene in M. xanthus increased stress sensitivity and affected development. The thesis will transform the M. xanthus Δark mutant with the original M. xanthus AK gene and a horseshoe crab
Protein is a macronutrient that is essential to building muscle mass. It is commonly found in animal products, though is also present in other sources, such as nuts and legumes. There are three macronutrients: protein, fats and carbohydrates. Macronutrients provide calories, or energy.
This document discusses peptidylarginine deiminases (PADs), a family of enzymes involved in post-translational protein modification through citrullination. There are five isozymes of PADs in humans (PAD1-4, PAD6) with varying tissue distribution and substrates. PADs play roles in apoptosis, structural support of tissues, and immune responses through citrullination of proteins like histones and keratins. Abnormal PAD activity can lead to diseases like rheumatoid arthritis, multiple sclerosis, and some cancers. Several inhibitors of PADs have been studied as potential therapeutics for these diseases, including CI-amidine and threonine-aspartate-F-
This document discusses epigenetic modifications of proteins. It begins by defining epigenetics and describing how epigenetic modifications can alter gene expression without changing DNA sequences. It then focuses on histone modifications like acetylation, methylation, ubiquitination, and phosphorylation. The document also examines epigenetic modifications of specific proteins - Sox2, CCAAT/enhancer binding protein a (C/EBPa), and caveolae associated proteins. It provides details on studies that analyzed the methylation of promoters for these genes in cancer cell lines and patient samples.
Similar to Eya phosphate - the cancer prevention role (20)
Mending Clothing to Support Sustainable Fashion_CIMaR 2024.pdfSelcen Ozturkcan
Ozturkcan, S., Berndt, A., & Angelakis, A. (2024). Mending clothing to support sustainable fashion. Presented at the 31st Annual Conference by the Consortium for International Marketing Research (CIMaR), 10-13 Jun 2024, University of Gävle, Sweden.
ESR spectroscopy in liquid food and beverages.pptxPRIYANKA PATEL
With increasing population, people need to rely on packaged food stuffs. Packaging of food materials requires the preservation of food. There are various methods for the treatment of food to preserve them and irradiation treatment of food is one of them. It is the most common and the most harmless method for the food preservation as it does not alter the necessary micronutrients of food materials. Although irradiated food doesn’t cause any harm to the human health but still the quality assessment of food is required to provide consumers with necessary information about the food. ESR spectroscopy is the most sophisticated way to investigate the quality of the food and the free radicals induced during the processing of the food. ESR spin trapping technique is useful for the detection of highly unstable radicals in the food. The antioxidant capability of liquid food and beverages in mainly performed by spin trapping technique.
hematic appreciation test is a psychological assessment tool used to measure an individual's appreciation and understanding of specific themes or topics. This test helps to evaluate an individual's ability to connect different ideas and concepts within a given theme, as well as their overall comprehension and interpretation skills. The results of the test can provide valuable insights into an individual's cognitive abilities, creativity, and critical thinking skills
When I was asked to give a companion lecture in support of ‘The Philosophy of Science’ (https://shorturl.at/4pUXz) I decided not to walk through the detail of the many methodologies in order of use. Instead, I chose to employ a long standing, and ongoing, scientific development as an exemplar. And so, I chose the ever evolving story of Thermodynamics as a scientific investigation at its best.
Conducted over a period of >200 years, Thermodynamics R&D, and application, benefitted from the highest levels of professionalism, collaboration, and technical thoroughness. New layers of application, methodology, and practice were made possible by the progressive advance of technology. In turn, this has seen measurement and modelling accuracy continually improved at a micro and macro level.
Perhaps most importantly, Thermodynamics rapidly became a primary tool in the advance of applied science/engineering/technology, spanning micro-tech, to aerospace and cosmology. I can think of no better a story to illustrate the breadth of scientific methodologies and applications at their best.
Authoring a personal GPT for your research and practice: How we created the Q...Leonel Morgado
Thematic analysis in qualitative research is a time-consuming and systematic task, typically done using teams. Team members must ground their activities on common understandings of the major concepts underlying the thematic analysis, and define criteria for its development. However, conceptual misunderstandings, equivocations, and lack of adherence to criteria are challenges to the quality and speed of this process. Given the distributed and uncertain nature of this process, we wondered if the tasks in thematic analysis could be supported by readily available artificial intelligence chatbots. Our early efforts point to potential benefits: not just saving time in the coding process but better adherence to criteria and grounding, by increasing triangulation between humans and artificial intelligence. This tutorial will provide a description and demonstration of the process we followed, as two academic researchers, to develop a custom ChatGPT to assist with qualitative coding in the thematic data analysis process of immersive learning accounts in a survey of the academic literature: QUAL-E Immersive Learning Thematic Analysis Helper. In the hands-on time, participants will try out QUAL-E and develop their ideas for their own qualitative coding ChatGPT. Participants that have the paid ChatGPT Plus subscription can create a draft of their assistants. The organizers will provide course materials and slide deck that participants will be able to utilize to continue development of their custom GPT. The paid subscription to ChatGPT Plus is not required to participate in this workshop, just for trying out personal GPTs during it.
Or: Beyond linear.
Abstract: Equivariant neural networks are neural networks that incorporate symmetries. The nonlinear activation functions in these networks result in interesting nonlinear equivariant maps between simple representations, and motivate the key player of this talk: piecewise linear representation theory.
Disclaimer: No one is perfect, so please mind that there might be mistakes and typos.
dtubbenhauer@gmail.com
Corrected slides: dtubbenhauer.com/talks.html
Current Ms word generated power point presentation covers major details about the micronuclei test. It's significance and assays to conduct it. It is used to detect the micronuclei formation inside the cells of nearly every multicellular organism. It's formation takes place during chromosomal sepration at metaphase.
The technology uses reclaimed CO₂ as the dyeing medium in a closed loop process. When pressurized, CO₂ becomes supercritical (SC-CO₂). In this state CO₂ has a very high solvent power, allowing the dye to dissolve easily.
2. What is Eya protein??
• The Eya proteins were originally identified as essential transcriptional co-
activators of the Six family of homeoproteins.
• Eya proteins were first identified as essential co-activators of the Six family of
homeoproteins, which are expressed during early embryogenesis and essential for
the development of numerous organs
• Given below is the representation of the eya protein.
2018-02-15 K. Guna Pragna 16BCE0942 2
4. Composition of Eya protein
• Subsequently, the highly conserved C-terminal domains of the Eya proteins were
discovered to act as a Mg2+-dependentTyr phosphatases, making Eyas the
first transcriptional activators to harbor intrinsic phosphatase activity
2018-02-15 K.Guna Pragna 16BCE0942 4
5. Eya protein in Cancer cells
• Only two direct targets of the EyaTyr phosphatase have been identified: H2AX,
whose dephosphorylation directs cells to the DNA repair instead of the apoptotic
pathway upon DNA damage, and ERβ, whose dephosphorylation inhibits its anti-
tumor transcriptional activity.
• The EyaTyr phosphatase mediates breast cancer cell transformation, migration,
invasion, as well as metastasis, through targets not yet identified.
2018-02-15 K.Guna Pragna 16BCE0942 5
7. Why the Eya protein is used in the cancer
cells??
• Intriguingly, the N-terminal domain of Eya contains a separate Ser/Thr
phosphatase activity implicated in innate immunity and in regulating c-
Myc stability.
• Thus, Eya proteins are highly complex, containing two separable phosphatase
domains and a transcriptional activation domain, thereby influencing tumor
progression through multiple mechanisms.
• The many functions of the phosphatase activities of Eya proteins using the 526
amino acid-mEya3 is given below
2018-02-15 K.Guna Pragna 16BCE0942 7
9. Steps to cure cancer by Eya protein….
1) TheTyr phosphatase activity of Eya
2) Eya’s Ser/Thr phosphatase activity
3) Targeting the Eya phosphatase for potential cancer therapy
2018-02-15 K.Guna Pragna 16BCE0942 9
10. Mechanism of Eya Protien…
• Eya proteins are critical for the development of multiple organs, in part by acting
with Six proteins to promote proliferation and survival of progenitor
cell populations. Mutations in Six1 and Eyas lead to various genetic disorders.The
crystal structure of maltose binding protein fused Six1 in complex with Eya2 ED
has been determined, revealing the molecular details of the Eya2 ED-Six1
interaction, as well as the structural basis of mutations causing branchio-oto-renal
syndrome.
• Six and Eya family members are typically down regulated after organ
development is complete, but various Six and Eya family members are re-
expressed in multiple tumor types, including ovarian breast Overexpression of
either Six1 or Eya correlates with recurrence, metastasis, and decreased overall
survival in a variety of tumor types.
2018-02-15 K.Guna Pragna 16BCE0942 10