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Presented by, 
SUMIT KUMAR DAS
 An epidemiological modeling is a simplified means of 
describing the transmission of communicable disease 
through individuals. 
 Models are mainly two types stochastic and deterministic. 
 There are Three basic types of deterministic models for 
infectious communicable diseases. 
 These simplest models are formulated as initial value 
problems for system of ordinary differential equations are 
formulated mathematically. 
 Parameter are estimated for various diseases and are used to 
compare the vaccination levels necessary for herd immunity 
for these disease. 
 Here the models considered here are suitable for disease 
which transmitted directly from person to person.
 Even though vaccines are available for many 
infectious disease, these disease cause suffering 
and mortality in the world. 
 In developed countries chronic disease of death 
such as cancer and heart disease received more 
attention than infectious diseases. 
 Recently some infectious disease like HIV which 
can lead to AIDS has become an important 
infectious disease for both developing and 
developed countries.
 The transmission interactions in a population are 
very complex so that it is difficult to comprehend 
the large scale dynamics of disease spread without 
the formal structure of mathematical model. 
 An epidemiological model uses a microscopic 
description (The role of an infectious individual) to 
predict the macroscopic behavior of disease spread 
through a population.
 Experiments with infectious disease spread in human 
populations are often impossible, unethical or 
expensive that is why epidemiological modeling 
become a need. 
 Modeling can often be used to compare different 
diseases in the same population, the same disease in 
different populations, or the same disease at different 
time. 
 Epidemiological models are useful in comparing the 
effects of prevention or control procedures.
 Stochastic:-"Stochastic" means being or having a 
random variable. Stochastic models depend on the 
chance variations in risk of exposure, disease and other 
illness dynamics. 
 Deterministic:-When dealing with large populations, 
as in the case of tuberculosis, deterministic or 
compartmental mathematical models are used. The 
transition rates from one class to another are 
mathematically expressed as derivatives, hence the 
model is formulated using differential equations. While 
building such models, it must be assumed that the 
population size in a compartment is differentiable with 
respect to time and that the epidemic process is 
deterministic.
 It is important to stress that the deterministic 
models presented here are valid only in case of 
sufficiently large populations. 
 In some cases deterministic models should 
cautiously be used. For example in case of 
seasonally varying contact rates the number of 
infectious subjects may reduce to infinitesimal 
values, thus maybe invalidating some results that 
are obtained in the field of chaotic epidemics.
 The population under consideration is divided into 
disjoint classes which change with time t. 
 The susceptible class consists of those individuals 
who can incur the disease but are not yet infective, 
this fraction of population denoted as S(t). 
 The infective class consists of those who are 
transmitting the disease to others, this class 
denoted as I(t). 
 The removed class denoted by R(t), consists of 
those who are removed from the susceptible-infective 
interaction by recovery with immunity, 
isolation, or death.
 The population considered has constant size N 
which is sufficiently large so that the sizes of each 
class can be considered as continuous variables. 
 If the model is to include vital dynamics, then it is 
assumed that births and natural deaths occur at 
equal rates and that all newborns are susceptible. 
 The population is homogenously mixing, and the 
type of direct or indirect contact adequate for 
transmission depends on the specific disease.
 SIS model:- If the recovery does not give immunity 
then the model is called an SIS model. It is appropriate 
for some bacterial agent disease such as meningitis, 
plague. 
 SIR model:-If the individual recovers with permanent 
immunity, then the model is called SIR model. It is 
appropriate for viral agent such as measles, small pox, 
mumps. 
 SIRS model:- If individuals recover with temporary 
immunity so that they eventually become susceptible 
again, then it is appropriate for SIRS model. 
 Some others models with more compartments like 
SEIS, SEIR, MSIR, MSEIR, MSEIRS.
 The flow of this model may be considered as 
follows: 
 S  I  R 
 Using a fixed population, N = S(t) + I(t) + R(t) 
 Kermack and McKendrick derived the following 
equations: 
S(t)= ds/dt= -SI …………….(i) 
I(t)= dI/dt= SI - I……………(ii) 
R(t)= dR/dt= I…………………(iii) 
 Several assumptions were made in the formulation 
of these equations.
 First, an individual in the population must be 
considered as having an equal probability as every 
other individual of contracting the disease with a 
rate of , which is considered the contact or 
infection rate of the disease. 
 Therefore, an infected individual makes contact 
and is able to transmit the disease with N others 
per unit time and the fraction of contacts by an 
infected with a susceptible is S/N . 
 The number of new infections in unit time per 
infective then is N(S/N), giving the rate of new 
infections as N(S/N)I = SI
 For the first and second equations, consider the 
population leaving the susceptible class as equal to 
the number entering the infected class. 
 However, a number equal to the fraction ( which 
represents the mean recovery/death rate, or 1/ the 
mean infective period) of infective are leaving this 
class per unit time to enter the removed class. 
 Finally, it is assumed that the rate of infection and 
recovery is much faster than the time scale of 
births and deaths and therefore, these factors are 
ignored in this model.
 Using the case of measles, for example, there is an 
arrival of new susceptible individuals into the 
population. For this type of situation births and 
deaths must be included in the model. 
 The following differential equations represent this 
model, assuming a death rate  and birth rate equal 
to the death rate: 
S(t)= dS/dt= -SI + (N – S) 
I(t)= dI/dt= SI - I - I 
R(t)= dR/dt= I - R
 The SIS model can be easily derived from the SIR 
model by simply considering that the individuals 
recover with no immunity to the disease, that is, 
individuals are immediately susceptible once they have 
recovered. 
 S  I  S 
 Removing the equation representing the recovered 
population from the SIR model and adding those 
removed from the infected population into the 
susceptible population gives the following differential 
equations: 
S(t)= ds/dt= -SI + (N – S) + I 
I(t)= dI/dt= SI - I - I
 This model is simply an extension of the SIR 
model as we will see from its construction. 
 S  I  R  S 
 The only difference is that it allows members of 
the recovered class to be free of infection and 
rejoin the susceptible class. 
S(t)= dS/dt= -SI + (N – S) + R 
I(t)= dI/dt= SI - I - I 
R(t)= dR/dt= I - R - R 
Where  is average loss of immunity rate of 
recovered individuals.
 Some notations related to the following models: 
M(t) : Passively immune infants 
E(t) : Exposed individuals in the latent period 
1/ : Average latent period 
1/ : Average infectious period 
B : Average birth rate 
 : Average temporary immunity period 
Some models with more compartments are 
discussed below
 The SEIS model:- The SEIS model takes into 
consideration the exposed or latent period of the 
disease, giving an additional compartment, E(t). 
 S  E  I  S 
 In this model an infection does not leave any 
immunity thus individuals that have recovered 
return to being susceptible again, moving back into 
the S(t) compartment.
 The SEIR model:- The SIR model discussed above 
takes into account only those diseases which cause an 
individual to be able to infect others immediately upon 
their infection. Many diseases have what is termed a 
latent or exposed phase, during which the individual is 
said to be infected but not infectious. 
 S  E  I  R 
 In this model the host population (N) is broken into 
four compartments: susceptible, exposed, infectious, 
and recovered, with the numbers of individuals in a 
compartment, or their densities denoted respectively by 
S(t), E(t), I(t), R(t), that is N = S(t) + E(t) + I(t) + R(t)
 The MSIR model:- There are several diseases 
where an individual is born with a passive 
immunity from its mother. 
 M  S  I  R 
 To indicate this mathematically, an additional 
compartment is added, M(t). 
 The MSEIR model:- For the case of a disease, 
with the factors of passive immunity, and a latency 
period there is the MSEIR model. 
 M  S  E  I  R
 The MSEIRS model:- An MSEIRS model is 
similar to the MSEIR, but the immunity in the R 
class would be temporary, so that individuals 
would regain their susceptibility when the 
temporary immunity ended. 
 M  S  E  I  R  S
 A population is said to have herd immunity for 
disease if enough people are immune so that the 
disease would not spread if it were suddenly 
introduced somewhere in the population. 
 In presence of a communicable diseases, one of 
main tasks is that of eradicating it via prevention 
measures and, if possible, via the establishment of 
a mass vaccination program. 
 In order to prevent the spread of infection from an 
infective, enough people must be immune so that 
replacement number satisfies S < 1.
 The susceptible fraction must be small enough so 
that the average infective infects less than one 
person during the infectious period. 
 Herd immunity in a population is achieved by 
vaccination of susceptible in the population. 
 If R is fraction of the population which is immune 
due to vaccination, then since S = 1-R when I = 0, 
herd immunity is achieved if (1-R) < 1 or R > 1- 
1/ 
 For example, if the contact number is 5, at least 
80% must be immune to have herd immunity.
 The SIR model with vital dynamics and SIS model 
have two intuitively appealing features. 
(a) The disease dies out if the contact number  
satisfies   1 and disease remains endemic if   1. 
(b) At an endemic equilibrium, the replacement number 
is 1; i.e., the average infective replaces itself with one 
new infective during the infectious period. 
 The SIR model without vital dynamics might be 
appropriate for describing an epidemic outbreak during 
a short time period, whereas the SIR with vital 
dynamics would be appropriate over longer time 
period.
 Although the models discussed here do provide 
some insights and useful comparisons, most model 
now being applied to specific diseases are more 
complicated. 
 The other models leading to periodic solutions 
have features such as a delay corresponding to 
temporary immunity, nonlinear incidence, variable 
population size or cross immunity with age 
structure.
THANK YOU

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Epidemiological modelling

  • 2.  An epidemiological modeling is a simplified means of describing the transmission of communicable disease through individuals.  Models are mainly two types stochastic and deterministic.  There are Three basic types of deterministic models for infectious communicable diseases.  These simplest models are formulated as initial value problems for system of ordinary differential equations are formulated mathematically.  Parameter are estimated for various diseases and are used to compare the vaccination levels necessary for herd immunity for these disease.  Here the models considered here are suitable for disease which transmitted directly from person to person.
  • 3.  Even though vaccines are available for many infectious disease, these disease cause suffering and mortality in the world.  In developed countries chronic disease of death such as cancer and heart disease received more attention than infectious diseases.  Recently some infectious disease like HIV which can lead to AIDS has become an important infectious disease for both developing and developed countries.
  • 4.  The transmission interactions in a population are very complex so that it is difficult to comprehend the large scale dynamics of disease spread without the formal structure of mathematical model.  An epidemiological model uses a microscopic description (The role of an infectious individual) to predict the macroscopic behavior of disease spread through a population.
  • 5.  Experiments with infectious disease spread in human populations are often impossible, unethical or expensive that is why epidemiological modeling become a need.  Modeling can often be used to compare different diseases in the same population, the same disease in different populations, or the same disease at different time.  Epidemiological models are useful in comparing the effects of prevention or control procedures.
  • 6.  Stochastic:-"Stochastic" means being or having a random variable. Stochastic models depend on the chance variations in risk of exposure, disease and other illness dynamics.  Deterministic:-When dealing with large populations, as in the case of tuberculosis, deterministic or compartmental mathematical models are used. The transition rates from one class to another are mathematically expressed as derivatives, hence the model is formulated using differential equations. While building such models, it must be assumed that the population size in a compartment is differentiable with respect to time and that the epidemic process is deterministic.
  • 7.  It is important to stress that the deterministic models presented here are valid only in case of sufficiently large populations.  In some cases deterministic models should cautiously be used. For example in case of seasonally varying contact rates the number of infectious subjects may reduce to infinitesimal values, thus maybe invalidating some results that are obtained in the field of chaotic epidemics.
  • 8.  The population under consideration is divided into disjoint classes which change with time t.  The susceptible class consists of those individuals who can incur the disease but are not yet infective, this fraction of population denoted as S(t).  The infective class consists of those who are transmitting the disease to others, this class denoted as I(t).  The removed class denoted by R(t), consists of those who are removed from the susceptible-infective interaction by recovery with immunity, isolation, or death.
  • 9.  The population considered has constant size N which is sufficiently large so that the sizes of each class can be considered as continuous variables.  If the model is to include vital dynamics, then it is assumed that births and natural deaths occur at equal rates and that all newborns are susceptible.  The population is homogenously mixing, and the type of direct or indirect contact adequate for transmission depends on the specific disease.
  • 10.  SIS model:- If the recovery does not give immunity then the model is called an SIS model. It is appropriate for some bacterial agent disease such as meningitis, plague.  SIR model:-If the individual recovers with permanent immunity, then the model is called SIR model. It is appropriate for viral agent such as measles, small pox, mumps.  SIRS model:- If individuals recover with temporary immunity so that they eventually become susceptible again, then it is appropriate for SIRS model.  Some others models with more compartments like SEIS, SEIR, MSIR, MSEIR, MSEIRS.
  • 11.  The flow of this model may be considered as follows:  S  I  R  Using a fixed population, N = S(t) + I(t) + R(t)  Kermack and McKendrick derived the following equations: S(t)= ds/dt= -SI …………….(i) I(t)= dI/dt= SI - I……………(ii) R(t)= dR/dt= I…………………(iii)  Several assumptions were made in the formulation of these equations.
  • 12.  First, an individual in the population must be considered as having an equal probability as every other individual of contracting the disease with a rate of , which is considered the contact or infection rate of the disease.  Therefore, an infected individual makes contact and is able to transmit the disease with N others per unit time and the fraction of contacts by an infected with a susceptible is S/N .  The number of new infections in unit time per infective then is N(S/N), giving the rate of new infections as N(S/N)I = SI
  • 13.  For the first and second equations, consider the population leaving the susceptible class as equal to the number entering the infected class.  However, a number equal to the fraction ( which represents the mean recovery/death rate, or 1/ the mean infective period) of infective are leaving this class per unit time to enter the removed class.  Finally, it is assumed that the rate of infection and recovery is much faster than the time scale of births and deaths and therefore, these factors are ignored in this model.
  • 14.  Using the case of measles, for example, there is an arrival of new susceptible individuals into the population. For this type of situation births and deaths must be included in the model.  The following differential equations represent this model, assuming a death rate  and birth rate equal to the death rate: S(t)= dS/dt= -SI + (N – S) I(t)= dI/dt= SI - I - I R(t)= dR/dt= I - R
  • 15.  The SIS model can be easily derived from the SIR model by simply considering that the individuals recover with no immunity to the disease, that is, individuals are immediately susceptible once they have recovered.  S  I  S  Removing the equation representing the recovered population from the SIR model and adding those removed from the infected population into the susceptible population gives the following differential equations: S(t)= ds/dt= -SI + (N – S) + I I(t)= dI/dt= SI - I - I
  • 16.  This model is simply an extension of the SIR model as we will see from its construction.  S  I  R  S  The only difference is that it allows members of the recovered class to be free of infection and rejoin the susceptible class. S(t)= dS/dt= -SI + (N – S) + R I(t)= dI/dt= SI - I - I R(t)= dR/dt= I - R - R Where  is average loss of immunity rate of recovered individuals.
  • 17.  Some notations related to the following models: M(t) : Passively immune infants E(t) : Exposed individuals in the latent period 1/ : Average latent period 1/ : Average infectious period B : Average birth rate  : Average temporary immunity period Some models with more compartments are discussed below
  • 18.  The SEIS model:- The SEIS model takes into consideration the exposed or latent period of the disease, giving an additional compartment, E(t).  S  E  I  S  In this model an infection does not leave any immunity thus individuals that have recovered return to being susceptible again, moving back into the S(t) compartment.
  • 19.  The SEIR model:- The SIR model discussed above takes into account only those diseases which cause an individual to be able to infect others immediately upon their infection. Many diseases have what is termed a latent or exposed phase, during which the individual is said to be infected but not infectious.  S  E  I  R  In this model the host population (N) is broken into four compartments: susceptible, exposed, infectious, and recovered, with the numbers of individuals in a compartment, or their densities denoted respectively by S(t), E(t), I(t), R(t), that is N = S(t) + E(t) + I(t) + R(t)
  • 20.  The MSIR model:- There are several diseases where an individual is born with a passive immunity from its mother.  M  S  I  R  To indicate this mathematically, an additional compartment is added, M(t).  The MSEIR model:- For the case of a disease, with the factors of passive immunity, and a latency period there is the MSEIR model.  M  S  E  I  R
  • 21.  The MSEIRS model:- An MSEIRS model is similar to the MSEIR, but the immunity in the R class would be temporary, so that individuals would regain their susceptibility when the temporary immunity ended.  M  S  E  I  R  S
  • 22.  A population is said to have herd immunity for disease if enough people are immune so that the disease would not spread if it were suddenly introduced somewhere in the population.  In presence of a communicable diseases, one of main tasks is that of eradicating it via prevention measures and, if possible, via the establishment of a mass vaccination program.  In order to prevent the spread of infection from an infective, enough people must be immune so that replacement number satisfies S < 1.
  • 23.  The susceptible fraction must be small enough so that the average infective infects less than one person during the infectious period.  Herd immunity in a population is achieved by vaccination of susceptible in the population.  If R is fraction of the population which is immune due to vaccination, then since S = 1-R when I = 0, herd immunity is achieved if (1-R) < 1 or R > 1- 1/  For example, if the contact number is 5, at least 80% must be immune to have herd immunity.
  • 24.  The SIR model with vital dynamics and SIS model have two intuitively appealing features. (a) The disease dies out if the contact number  satisfies   1 and disease remains endemic if   1. (b) At an endemic equilibrium, the replacement number is 1; i.e., the average infective replaces itself with one new infective during the infectious period.  The SIR model without vital dynamics might be appropriate for describing an epidemic outbreak during a short time period, whereas the SIR with vital dynamics would be appropriate over longer time period.
  • 25.  Although the models discussed here do provide some insights and useful comparisons, most model now being applied to specific diseases are more complicated.  The other models leading to periodic solutions have features such as a delay corresponding to temporary immunity, nonlinear incidence, variable population size or cross immunity with age structure.