Talk given at this conference covering prototypes involving ML, as well as data indexing hackathons capturing community consensus and where we are going with this.

1. Ben Busby, Hackathon Participants
NCBI Hackathons Program
Ariel Precision Medicine, Johns Hopkins, Deloitte
@dcgenomics, LinkedIn
Prototype Software for Machine Learning Analysis
of Human Genomes, Variants, and Expression!

2. Prototype Software for Machine Learning Analysis
of Human Genomes, Variants, and Expression!
Ben Busby, Hackathon Participants
NCBI Hackathons Program
Ariel Precision Medicine, Johns Hopkins, Deloitte
@dcgenomics, LinkedIn

4. 4

5. Polygenic SNP Search Tool
https://github.com/NCBI-
Hackathons/PSST

6. https://github.com/NCBI-
Hackathons/GenomicRobots

7. https://github.com/NCBI-Hackathons/Complex_Phenogeno

9. 9

10. 10

11. 11
Building a Usable Human Pangenome!

12. 12
Building a Usable Human Pangenome!
Deidentified Haploblock?

13. 13

14. https://ncbi-hackathons.github.io/GeneExpressionAging/ideogram

15. 15

16. 16

17. 17

18. 18
RNA-seq Indexing!

19. 19
https://github.com/NCBI-Hackathons/RNA-Seq-in-the-Cloud

20. 20

21. 21
https://www.biorxiv.org/content/10.1101/461301v2
Google for PhenotypeXpression (all one word)

22. 22

23. 23

24. 24

25. 25

26. 26

28. 28

29. 29

30. 30

31. 31
Quickly Mapping RNAseq onto a Graph

32. 32
Quickly Mapping RNAseq onto a Graph
Also mapping SNPchips in a large scale way
to look at population frequencies!

33. 33

34. 34
Credit: GAUR, SRINIVASAN and VARSHNEY

35. 35

36. 36

37. 37
• Hackathon Participants!
• Allissa Dillman
• Jose Die
• Kim LeBlanc
• Moamen ElMassry
• Olaitan Awe
• Chaochih Liu
• Sean La
• Anmol Vohra
• Chipo Mashayamombe
• Niki Athanasiadou
• Alex Goncearenco
• Eric Weitz
• Jeff Lam
• Aynex Mercado
• PhenotypeXpression
• Check bioRxiv!
• Consensus_ML
• Check bioRxiv!
• Kimiko Suzuki
• Benedict Paten
• Kate Hertweck
• Evan Biederstedt

38. 38

39. 39

40. 40
https://github.com/ncbi-
hackathons/biollante

41. 41
Paper coming soon!