The document outlines various resources and initiatives related to bioinformatics, including hackathons and the Visiting Bioinformatician Program led by Ben Busby, Ph.D. It provides links to tools like the Polygenic SNP Search Tool and the Automated PubRunner, along with information on training opportunities at NCBI. Additionally, it emphasizes community engagement and available lectures on genomic data analysis.

1. Ben Busby, Ph.D.
Genomics Outreach Coordinator, Bioinformatics Training Lead
NCBI
Chair, Department of Bioinformatics and Data Science
FAES
ben.busby@nih.gov
NIH Hackathons and the Visiting Bioinformatician Program

2. Polygenic SNP Search Tool
https://github.com/NCBI-
Hackathons/PSST

3. https://github.com/NCBI-
Hackathons/GenomicRobots

4. https://github.com/NCBI-Hackathons/Complex_Phenogeno

6. https://github.com/NCBI-
Hackathons/ViruSpy

9. Available to
anyone!

10. First 5 lectures
now available
on

17. Combined score is
the average of SVs,
mappability, GC..
NCBI region list
Encode blacklist

18. DOCKER&
FLASK&
JUPYTER&
MONGO&
SHINY.

19. phenvar.colorado.edu

21. 21
EUtils (Search API) Command Line
EDirect
Google for
EDirect Cookbook

24. https://ncbi-hackathons.github.io/GeneExpressionAging/ideogram

25. 25
Instead of PubMed FTP…
An automated tool (alpha)
Pubrunner.org

26. Other People’s Hackathons

27. @DCGenomics
Communication

28. Creating a Community
linkedin.com/in/DCGenomics

29. Creating a Community
https://ncbi-hackathons.github.io

30. Come work at NCBI for 4-6 weeks!
Email bioinformatics-training@ncbi.nlm.nih.gov
for more information!