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ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
CHAPTER 21
INFECTIONS OF THE RESPIRATORY
SYSTEM
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
WHY IS THIS IMPORTANT?
 The respiratory system is the most commonly
infected system
 Health care providers will see more respiratory
infections than any other type
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
OVERVIEW
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
THE RESPIRATORY SYSTEM
 A major portal of entry for infectious
organisms
 It is divided into two tracts – upper and lower
 The division is based on structures and functions
in each part
 The two parts have different types of infection
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
THE RESPIRATORY SYSTEM
 The upper respiratory tract:
 Nasal cavity, sinuses, pharynx, and larynx
 Infections are fairly common
 Usually nothing more than an irritation
 The lower respiratory tract:
 Lungs and bronchi
 Infections are more dangerous
 Can be very difficult to treat
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
ANATOMY OF THE
RESPIRATORY SYSTEM
 The most accessible system in the body
 Breathing brings in clouds of potentially infectious
pathogens
 The body has a variety of host defense
mechanisms
 Innate immune response
 Adaptive immune response
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
ANATOMY OF THE
RESPIRATORY SYSTEM
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
ANATOMY OF THE
RESPIRATORY SYSTEM
 Upper respiratory tract is continuously
exposed to potential pathogens
 Lower respiratory tract is essentially a sterile
environment
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PATHOGENS OF THE
RESPIRATORY SYSTEM
 Many bacterial organisms infect the
respiratory system
 Upper respiratory tract also portal of entry for
viral pathogens
 Vaccination has eliminated many respiratory
infections
 Some still seen in underdeveloped parts of the
world
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PATHOGENS OF THE
RESPIRATORY SYSTEM
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PATHOGENS OF THE
RESPIRATORY SYSTEM
 Respiratory pathogens are easily transmitted from
human to human
 They circulate within a community
 Infections spread easily
 Some respiratory pathogens exist as part of the
normal flora
 Others are acquired from animal sources –
zoonotic infections
 Q fever from farm animals
 Psittacosis from parrots and other birds
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PATHOGENS OF THE
RESPIRATORY SYSTEM
 Water can be a source of respiratory infections
 Legionellosis
 Contaminated water can be aerosolized
 Droplets can be inhaled and infection can result
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PATHOGENS OF THE
RESPIRATORY SYSTEM
 Fungi are also a source of respiratory infection
 Usually in immunocompromised patients
 Most dangerous are Aspergillus and Pneumocystis
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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PATHOGENS OF THE
RESPIRATORY SYSTEM
 Some pathogens are restricted to certain sites
 Legionella only infects the lung
 Other pathogens cause infection in multiple
sites
 Streptococcus can cause:

Middle ear infections

Sinusitis

Pneumonia
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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SITES OF INFECTION
 Frequent sites of infection are:
 Middle ear
 Mastoid cavity
 Nasal sinuses
 Nasopharynx
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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DEFENSES OF THE
RESPIRATORY SYSTEM
 The respiratory system has significant
defenses
 The upper respiratory tract has:
 Mucociliary escalator
 Coughing
 The lower respiratory tract has:
 Alveolar macrophages
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DEFENSES OF THE
RESPIRATORY SYSTEM
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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BACTERIA INFECTING THE
RESPIRATORY SYSTEM
 Can be divided into groups depending on the
infections they cause
 Otitis media, sinusitis, and mastoiditis
 Pharyngitis
 Typical and atypical community-acquired
pneumonia
 Hospital-acquired (nosocomial) pneumonia
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BACTERIA INFECTING THE
RESPIRATORY SYSTEM
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BACTERIA INFECTING THE
RESPIRATORY SYSTEM
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BACTERIAL INFECTIONS OF THE
UPPER RESPIRATORY TRACT
 Otitis media, mastoiditis, and sinusitis
 Pharyngitis
 Scarlet fever
 Diphtheria
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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OTITIS MEDIA, MASTOIDITIS,
AND SINUSITIS
 Middle ear, mastoid cavity, and sinuses are
connected to the nasopharynx
 Sinuses and eustachian tubes have ciliated
epithelial cells
 A virus initially invades the ciliated epithelium
 This destroys the ciliated cells, allowing bacteria to
invade
 Mastoiditis is uncommon but very dangerous
 Mastoid cavity is close to the nervous system and large
blood vessels
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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PHARYNGITIS
 A variety of bacteria can cause infection in the pharynx
 A classic infection is strep throat
 Caused by Streptococcus pyogenes

Contains M proteins which inhibits phagocytosis

Produces pyrogenic toxins which cause the symptoms seen with
pharyngitis
 Group A streptococci can cause abscesses on the tonsils
 S. pyogenes can cause scarlet fever and toxic shock
syndrome
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PHARYNGITIS
© CDC/Dr. Heinz F. Eichenwald
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PHARYNGITIS
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
SCARLET FEVER
 Caused by Group A streptococci
 Usually seen in children under age of 18 years
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
SCARLET FEVER:
Pathogenesis
 Symptoms usually begin with appearance of a
rash
 Tiny bumps on the chest and abdomen
 Can spread over the entire body

Appears redder in armpits and groin
 Rash lasts 2-5 days
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
SCARLET FEVER:
Pathogenesis
 Symptoms can also include:
 Very sore throat with yellow or white papules
 Fever of 101˚F or higher
 Lymphadenopathy in neck
 Headache, body aches, and nausea
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
SCARLET FEVER:
Treatment
 A variety of antibiotic therapies is available
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DIPHTHERIA
 Caused by the toxin produced by
Corynebacterium diphtheriae
 A potent inhibitor of protein synthesis
 It is a localized infection
 Presents as severe pharyngitis
 Can be accompanied by plaque-like
pseudomembrane in the throat
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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DIPHTHERIA
© Visuals Unlimited
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DIPHTHERIA
 Toxemia can make diphtheria life-threatening
 Can involve multiple organ systems
 Can cause acute myocarditis
 Diphtheria is transmitted by:
 Droplet aerosol
 Direct contact with skin
 Fomites (to a lesser degree)
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DIPHTHERIA:
Vaccination
 Vaccination against diphtheria is part of the
DTaP protocol
 Infection is rare when vaccination is in place
 Diphtheria still occurs frequently in some parts
of the world
 Particularly where conditions do not permit
vaccination
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DIPHTHERIA:
Pathogenesis
 Corynebacterium diphtheriae is a small Gram-
positive bacillus
 Has V and L forms
 Forms are caused by a unique cell division process
– snapping
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DIPHTHERIA:
Pathogenesis
© CDC
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DIPHTHERIA:
Pathogenesis
 Corynebacterium is poorly invasive
 Effects of infection are due to the exotoxin
 The exotoxin has two polypeptide chains
 B chain – entry into the target
 A chain – inhibition of protein synthesis
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DIPHTHERIA:
Pathogenesis
 Local effects include epithelial cell necrosis and
inflammation
 Pseudomembrane is composed of a mixture of
fibrin, leukocytes, cell debris
 Size varies from small and localized to extensive
 An extensive membrane can cover the trachea
 Diphtheria can also be systemic, causing acute
myocarditis
 Tox genes that code for the toxin regulated by operons
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DIPHTHERIA:
Pathogenesis
 Incubation takes two to four days
 Disease usually presents as pharyngitis or
tonsillitis with fever, sore throat, and malaise
 Pseudomembrane can develop on tonsils,
uvula, soft palate, or pharyngeal walls
 May extend downward toward larynx and trachea
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DIPHTHERIA:
Pathogenesis
 Uncomplicated cases resolve spontaneously
 Membrane is coughed up in days
 Complicated cases are due to respiratory
obstruction
 Can result in suffocation
 Systemic infection can result in myocarditis
 Diphtheria can also cause infections of the
skin
 Simple pustules or chronic nonhealing ulcerations
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
DIPHTHERIA:
Treatment
 Toxin neutralization is the most important
 Must be done as quickly as possible
 Antitoxin can only neutralize free toxin
 Pathogen elimination is also important
 Corynebacterium diphtheriae is sensitive to many
antibiotics
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
VIRAL INFECTIONS OF THE
UPPER RESPIRATORY TRACT
 Rhinovirus infection (the common cold)
 Parainfluenza
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RHINOVIRUS INFECTION
 There are several hundred serotypes of rhinovirus
 Fewer than half have been characterized
 50% are picornaviruses
 Extremely small, non-enveloped, single-stranded RNA
viruses
 Optimum temperature for picornavirus growth is
33˚C
 The temperature in the nasopharynx
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RHINOVIRUS INFECTION:
Pathogenesis
 The glycoprotein ICAM is the cellular receptor
 Rhinovirus is the major cause of mild upper
respiratory infections
 Known as the common cold virus
 Affects people of all ages, especially older children
and adults
 Infection is seen throughout the year
 Usually epidemic in spring and early fall
 Infection is rarely seen in the lower respiratory
tract
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RHINOVIRUS INFECTION:
Pathogenesis
 Incubation period is 2-3 days
 Acute symptoms can last for 3-7 days
 Infection is usually mild
 Little damage to the body
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RHINOVIRUS INFECTION:
Treatment
 There is no specific therapy or treatment
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PARAINFLUENZA
 There are four types of parainfluenza virus
 All belong to the paramyxovirus group
 Single-stranded enveloped RNA viruses
 Contain hemagglutinin and neuraminidase
 Transmission and pathology similar to
influenza virus, but there are differences
 Parainfluenza virus replicates in the cytoplasm
 Influenza virus replicates in the nucleus
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PARAINFLUENZA
 Parainfluenza is genetically more stable than
influenza
 Very little mutation
 Little antigenic drift
 No antigenic shift
 Parainfluenza is a serious problem in infants and
small children
 Only a transitory immunity to reinfection
 Infection becomes milder as the child ages
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PARAINFLUENZA INFECTION:
Pathogenesis
 Onset of infection may be abrupt
 Can appear as an acute spasmodic croup
 Progresses over 1-3 days to involve the lower
respiratory tract
 Duration of the illness between 4 and 21 days
 Usually 7-10 days
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PARAINFLUENZA INFECTION:
Pathogenesis
 Type 1 parainfluenza virus
 Major cause of laryngotracheitis (acute croup) in
infants and young children
 Causes severe upper respiratory illness
(pharyngitis and tracheobronchitis) in all age
groups
 Outbreaks usually in the fall
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PARAINFLUENZA INFECTION:
Pathogenesis
 Type 3 parainfluenza virus
 Major cause of severe lower respiratory infection
in infants and young children
 Causes bronchitis and pneumonia in children less
than one year of age
 Infections can occur throughout the year
 50% of all children are exposed to this virus during
their first year of life
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PARAINFLUENZA INFECTION:
Treatment
 There is currently no method of treatment
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BACTERIAL INFECTIONS OF THE
LOWER RESPIRATORY TRACT
 Bacterial pneumonia
 Chlamydial pneumonia
 Mycoplasma pneumonia
 Tuberculosis
 Pertussis
 Inhalation anthrax
 Legionella pneumonia (Legionnaire’s disease)
 Q fever
 Psittacosis (Ornithosis)
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BACTERIAL PNEUMONIA
 One of the most serious lower respiratory tract
infections
 Can be divided into two types:
 Community-acquired
 Nosocomial
 Each type can be caused by a variety of
organisms
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BACTERIAL PNEUMONIA
 Nosocomial pneumonia
 Occurs approximately 48 hours after admission to hospital
 Usually associated with Staphylococcus aureus
 Also caused by Gram-negative bacteria
 Particularly difficult to deal with if pathogen is resistant to
antibiotics
 Community-acquired pneumonia
 Usually presents as a lobar pneumonia
 Accompanied by fever, chest pain, and production of
purulent sputum
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BACTERIAL PNEUMONIA
 Atypical pneumonia
 Coughing without sputum
 Caused by a variety of bacteria
 Bacterial pneumonia can progress to the
production of lung abscesses
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
NOSOCOMIAL PNEUMONIA:
Pathogenesis
 Hospital is clinically dangerous
 Large number of pathogens
 Large number of debilitated patients
 Debilitation causes increased proteolytic enzyme
activity in saliva
 Contributes to the rapid turnover of the fibronectin layer
 This layer covers the epithelium of the pharynx
 Without fibronectin, it can become colonized with
opportunistic pathogens
 These can be aspirated into the lungs and cause pneumonia
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
NOSOCOMIAL PNEUMONIA:
Pathogenesis
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
COMMUNITY-ACQUIRED PNEUMONIA:
Pathogenesis
 Usually occurs after the aspiration of
pathogens
 Requires enough pathogens to overwhelm resident
defenses
 Establishment of an infection in the lungs
depends on:
 The number of pathogens entering
 The competence of the mucociliary escalator
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
COMMUNITY-ACQUIRED PNEUMONIA:
Pathogenesis
 Classical lobar pneumonia has four stages:
 Acute congestion

Local capillaries become engorged with neutrophils.
 Red hepatization

Red blood cells from the capillaries flow into the alveolar
spaces.
 Gray hepatization

Large numbers of dead neutrophils and degenerating red cells
 Resolution

Adaptive immune response begins to produce antibodies.

These control the infection
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BACTERIAL PNEUMONIA:
Treatment
 Course of treatment depends on:
 Severity of the infection
 Type of organism causing the infection
 Most common pathogen is Streptococcus
pneumoniae
 Treated with penicillin, amoxicillin-clavulanate, and
erythromycin
 Other antibiotics used are:
 Cefuroxime, ofloxacin, and trimethoprim-
sulfamethoxazole
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
CHLAMYDIAL PNEUMONIA
 Caused by Chlamydia pneumoniae:
 Found throughout the world
 Responsible for 10% of pneumonia cases
 Infection occurs throughout the year
 Spread by person-to-person contact
 More infections in the elderly
 Can cause both community-acquired and
nosocomial infections
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
CHLAMYDIAL PNEUMONIA:
Pathogenesis
 Disease can present as:
 Pharyngitis
 Lower-respiratory-tract infection
 Both
 It is clinically similar to Mycoplasma
pneumonia
 Initial pharyngitis lasts for 1-3 weeks
 Replaced by persistent cough lasting for weeks
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
CHLAMYDIAL PNEUMONIA:
Treatment
 Tetracycline or erythromycin is effective
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
MYCOPLASMA PNEUMONIA
 Mild form of pneumonia
 Accounts for about 10% of all pneumonias
 Referred to as walking pneumonia
 No need for hospitalization
 Most common age for infections between 5
and 15 years
 Causes approximately 30% of all teenage
pneumonias
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
MYCOPLASMA PNEUMONIA
 Caused by Mycoplasma pneumoniae
 Lacks a cell wall
 Acquired by droplet transmission
 Infectious dose fewer than 100 pathogens
 Found throughout the world, especially in
temperate climates
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
MYCOPLASMA PNEUMONIA:
Pathogenesis
 Incubation period is between 2 and 15 days
 Infection has an insidious onset
 Fever, headache, and malaise for 2 to 4 days
 Then appearance of respiratory symptoms
 Infection affects the trachea, bronchi, and
bronchioles
 May extend down to the alveoli
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
MYCOPLASMA PNEUMONIA:
Pathogenesis
 Bacteria initially attach to the cilia and microvilli
on cells lining the bronchial epithelium
 Attachment interferes with ciliary action causing:
 Detachment of the mucosal layer
 Inflammation and appearance of exudates
 Inflammatory response is initially composed of
lymphocytes, plasma, macrophages
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MYCOPLASMA PNEUMONIA:
Pathogenesis
 Organism can be shed in upper respiratory
secretions for:
 2 to 8 days before symptoms appear
 Up to 14 weeks after symptoms subside
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Edition) © Garland Science
MYCOPLASMA PNEUMONIA:
Pathogenesis
 Infection causes:
 Mild tracheobronchitis
 Fever, cough, headache, and malaise
 Infection sometimes causes:
 Sore throat
 Otitis media
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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MYCOPLASMA PNEUMONIA:
Treatment
 Usual treatment is erythromycin or
tetracycline
 Can shorten the clinical symptoms
 Organism remains in the nasopharynx for long
periods after the symptoms have subsided
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Edition) © Garland Science
TUBERCULOSIS
 An estimated 2 billion people are infected
 1.5 million die each year
 AIDS and HIV infection have had a significant
role in the increase of tuberculosis
 They increase the efficiency of the tuberculosis
transmission cycle
 Poverty and poor socioeconomic conditions
are breeding grounds for tuberculosis
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TUBERCULOSIS
 Drug resistance is becoming increasingly dangerous
 A major reason for resistance is noncompliance
 Many patients stop taking the drugs early
 Early detection is vital
 Initial symptoms are similar to those seen in other respiratory
infections – it is important to look for:
 Fever
 Fatigue
 Weight loss
 Chest pain
 Shortness of breath
 Congestion with coughing
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TUBERCULOSIS
 Caused by Mycobacterium tuberculosis
 Rod-shaped bacillus
 Acid-fast
 Nonspore forming
 Produces mycolic acid

Makes it difficult to Gram stain

Protects the pathogen from antibiotic therapy and host
defenses
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TUBERCULOSIS
© CDC/Dr. George P. Kubica
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
TUBERCULOSIS:
Pathogenesis
 For healthy people, tuberculosis is a self-
limiting disease
 Host defenses deal with it effectively
 Tuberculosis can be serious if cell-mediated
immunity is compromised or inefficient
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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TUBERCULOSIS:
Pathogenesis
 M. tuberculosis cell wall interferes with
macrophage function and T-cell activation
 Inhibits the formation of the phagolysosome
 This allows it to escape into the cytoplasm where
it:
 Increases in number
 Eventually spreads to the lymph nodes
 From here it enters the blood and is distributed
throughout the body
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
TUBERCULOSIS:
Pathogenesis
 Cell wall components attract T cells and
macrophages
 Uncontrollable release of enzymes that destroy
tissues
 Necrosis results
 Necrosis in the lung liquefies
 Spreads to adjacent areas
 Causes the cycle to continue
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TUBERCULOSIS:
Pathogenesis
© CDC
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
TUBERCULOSIS:
Pathogenesis
 Two basic types of tuberculosis
 Primary

Follows initial exposure to the pathogen
 Secondary

Can occur years later
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PRIMARY TUBERCULOSIS:
Pathogenesis
 Occurs when a host encounters pathogen for
the first time
 Organisms find their way to the alveoli
 A localized inflammatory response develops
 Phagocytosis of the bacilli by macrophages and
neutrophils
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PRIMARY TUBERCULOSIS:
Pathogenesis
 Pathogens are not killed, they:
 Are transported by white cells to the regional
lymph nodes
 Continue to divide intracellularly
 Cell-mediated immune response begins
 If the primary lesion is not contained, tubercles
form
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Edition) © Garland Science
PRIMARY TUBERCULOSIS:
Pathogenesis
 Tubercles are aggregates of enlarged
macrophages filled with bacteria
 Can be surrounded by fibroblasts and lymphocytes
 Center of the tubercle can undergo caseous
necrosis

May calcify – Ghon complexes

Readily seen on X-rays
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PRIMARY TUBERCULOSIS:
Pathogenesis
 Most primary infections become quiescent and
asymptomatic
 About 10% evolve into clinical disease
 Bacilli spread through the lymphatic channels,
bloodstream, and gastrointestinal system and cause:

Tuberculous meningitis

Miliary (disseminated) tuberculosis

Both
 Localized tubercles discharge their contents

Can be aspirated and distributed to other parts of the lungs
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
SECONDARY TUBERCULOSIS:
Pathogenesis
 Secondary tuberculosis can be due to:
 Reactivation of old lesions
 Gradual progression of primary tuberculosis into chronic
disease
 Recurrence of disease occurs in a small percentage of
patients
 Usually manifests itself in the apices of the lungs
 Usually occurs within two years of the primary infection
 It can evolve decades later when innate resistance is
diminished
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TUBERCULOSIS:
Treatment
 Usually a triple therapy containing:
 Isoniazid (INH)
 Pyrazinamide (PZA)
 Rifampicin (RFP)
 All three are taken once a day for two months
 INH and RFP are taken for nine more months
 If the strain is drug-resistant, initial treatment
includes ethambutol
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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TUBERCULOSIS:
Treatment
 Compliance with the drug therapy is very
important
 Compliance can be difficult because of side
effects
 The drugs are very toxic
 Most serious is liver toxicity
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
TUBERCULOSIS:
Treatment
 Directly observed therapy (DOT) is used to
prevent multi-drug-resistant tuberculosis
 DOT involves delivery of scheduled doses of
medication by a health care worker
 Patient’s ingestion or injection of drugs is directly
administered, observed, and documented
 Ensures that patients receive medication
 DOT helps prevent:
 Spread of tuberculosis
 Occurrence of multi-drug-resistant tuberculosis
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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PERTUSSIS
(WHOOPING COUGH)
 Spread by airborne droplets from patients in
the early stages
 Highly contagious
 Infects 80-100% of exposed susceptible
individuals
 Spreads rapidly in schools, hospitals, offices, and
homes – just about anywhere
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PERTUSSIS
 Caused by Bordetella pertussis
 Gram-negative coccobacillus
 Does not survive in the environment
 Reservoir is humans
 Symptoms can be similar to those of a cold.
 Infected adults often spread the infection to
schools and nurseries
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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PERTUSSIS
 Mortality is highest in infants and children under 1 year
old
 Immunization against pertussis started in the 1940s.
 Continues today as part of DTaP vaccination
 Pertussis appears to be making a comeback
 Epidemics are occurring every 3-5 years
 Greatest numbers of infections are among 10-20 year-olds

People who were not immunized
 Shows a relationship between lack of vaccination and
infection
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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PERTUSSIS:
Pathogenesis
 Bordetella pertussis has an affinity for ciliated
bronchial epithelium
 After attaching, it produces a tracheal toxin
 Immobilizes and progressively destroys the ciliated
cells
 Causes persistent coughing

Caused by the inability to move the mucus that builds up
 Pertussis does not invade cells of the respiratory
tract or deeper tissues
 Incubation period is 7 to 10 days
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PERTUSSIS:
Pathogenesis
 Infection has three stages:
 Catarrhal stage – 1-2 weeks

Persistent perfuse and mucoid rhinorrhea (runny nose)

May have sneezing, malaise, and anorexia

Most communicable during this stage
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PERTUSSIS:
Pathogenesis
 Infection has three stages:
 Paroxysmal stage

Persistent coughing

Up to 50 times a day for 2 to 4 weeks

Characteristic whooping sound is heard

Patient’s trying to catch his/her breath

Apnea may follow the coughing, especially in infants

Significant increase in lymphocytes
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PERTUSSIS:
Pathogenesis
 Infection has three stages:
 Convalescent stage

Frequency and severity of coughing and other
symptoms gradually decrease
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PERTUSSIS:
Pathogenesis
 Most common complications of pertussis are:
 Superinfection with Streptococcus pneumonia
 Convulsions
 Subconjunctival and cerebral bleeding and anoxia
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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PERTUSSIS:
Treatment
 Antibiotics can be used in the early stages
 Limits the spread of infection
 Once the paroxysmal stage is reached, therapy
is only supportive
 Vaccination is the best option
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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INHALATION ANTHRAX
 Produces a fulminate pneumonia
 Comes on suddenly with great severity
 Leads to respiratory failure and death
 Anthrax primarily a disease of herbivores
 Acquired from spores found in pastures
 If spores are inhaled, anthrax can occur in the
respiratory tract
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INHALATION ANTHRAX
 Infection is infrequently seen in healthy
individuals
 Usually presents as localized lesions where it occurs.
 Has been recent interest in inhalation anthrax as a
biological weapon
 In October 2001, letters contaminated with
powdered anthrax spores were mailed to various
locations in the US.
 Several deaths resulted
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INHALATION ANTHRAX:
Pathogenesis
 The causative agent is Bacillus anthracis
 Gram-positive rod
 Spore-forming
 Spores germinate in human tissues
 Antiphagocytic properties of the capsule aid its
survival and growth in large numbers
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INHALATION ANTHRAX:
Pathogenesis
 Pathogenesis results from the powerful
exotoxin produced
 Symptoms of pulmonary anthrax are:
 1-5 days of nonspecific malaise, mild fever,
nonproductive cough
 Progressive respiratory distress and cyanosis
 Rapid and massive spread to the central
nervous system and bloodstream is followed
by death
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INHALATION ANTHRAX:
Treatment
 Antibiotic therapy can be successful
 B. anthracis is susceptible to penicillin
 Doxycycline and ciprofloxacin are alternative
prophylactics
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LEGIONELLA PNEUMONIA
(LEGIONNAIRES’ DISEASE)
 Caused by Legionella pneumophila
 Gram-negative rod
 Cannot be stained or grown using normal
techniques
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LEGIONELLA PNEUMONIA
© CDC/Science Photo Library
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LEGIONELLA PNEUMONIA
 Unrecognized as a disease before 1976
 Legionella is ubiquitous in fresh water
 Lives within Acanthamoeba organisms
 These are infectious reservoirs
 Transmitted to humans as a humidified aerosol
 Person-to-person transmission has never been seen
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LEGIONELLA PNEUMONIA
 Healthy people not affected very often
 Many cases go undetected
 Legionella has low virulence for humans
 Infection is seen in less than 5% of population
 Usually in the immunocompromised
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LEGIONELLA PNEUMONIA:
Pathogenesis
 Legionella is a facultative intracellular parasite
 Aggressively attacks the lungs
 Produces a necrotizing multifocal pneumonia

Involves alveoli and terminal bronchioles
 The inflammatory response produces an
exudate containing:
 Fibrin, polymorphonuclear leukocytes, and red
blood cells
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LEGIONELLA PNEUMONIA:
Pathogenesis
 Organisms inhaled enter the alveoli
 Infect alveolar macrophages
 Produce an endocytic vesicle

Continue replication

Prevent fusion of the vesicle with lysosomes
 Infected macrophages show a coiled morphology
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LEGIONELLA PNEUMONIA:
Pathogenesis
Photo courtesy of Marcus Horwitz.
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LEGIONELLA PNEUMONIA:
Pathogenesis
 Disease causes severe toxic pneumonia
 Begins with myalgia and headache
 Followed by rapidly rising fever

Chills, pleuritic chest pain, vomiting, and diarrhea

Occasional confusion and delirium
 Interstitial infiltrates in lung are seen on X-ray
 Can also cause hepatic dysfunction
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LEGIONELLA PNEUMONIA:
Pathogenesis
 Serious cases show progressive illness over 3
to 6 days
 Ends in shock or respiratory failure
 Mortality rate is about 15%
 Can be as high as 50% in hospital outbreaks

High population of the immunocompromised or
immunosuppressed
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LEGIONELLA PNEUMONIA:
Treatment
 Erythromycin is better than penicillin
 Legonella produces a β-lactamase
 Tetracycline, rifampin, and quinolones are
effective
 Azithromycin and clarithromycin are the
agents of choice
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
Q FEVER
 A zoonotic infection seen wordwide
 Cattle, sheep, and goats are the primary reservoirs for
humans
 Caused by Coxiella burnetii
 Gram-negative
 Spore-forming
 Grows well in placenta of animals

Large numbers of Coxiella can be transmitted by inhalation during
animal births
 Transmission can also be by ingestion of unpasteurized
milk
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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Q FEVER:
Pathogenesis
 Not clearly understood
 Begins 9 to 20 days after inhalation
 Abrupt onset of chills, fever, and headache
 Can also be a mild hacking cough and patchy
interstitial pneumonia
 Some cases show abnormal liver function
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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Q FEVER:
Treatment
 Most cases resolve spontaneously
 Tetracycline can be given to shorten fever
 Reduces risk of rare chronic infection
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Edition) © Garland Science
PSITTACOSIS
(ORNITHOSIS)
 Zoonotic pneumonia
 Contracted by inhalation of bird droppings
infected with Chlamydophila psittaci
 Found in many birds, including turkeys
 Some strains of C. psittaci are extremely
contagious
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PSITTACOSIS:
Pathogenesis
 Presents as an acute infection of the lower
respiratory tract
 Acute onset of fever, headache, malaise, muscle
aches, dry hacking cough, and bilateral pneumonia
 Occasional systemic complications include:

Myocarditis, endocarditis, and hepatitis

Splenomegaly and hepatomegaly can also occur
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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PSITTACOSIS:
Treatment
 Tetracycline and erythromycin are effective if
given early
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Edition) © Garland Science
VIRAL INFECTIONS OF THE
LOWER RESPIRATORY TRACT
 75-80% of all acute respiratory tract infections
in the US are of viral origin
 Everyone has 3 or 4 per year
 Incidence varies inversely with age
 Greatest in young children
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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VIRAL INFECTIONS OF THE
LOWER RESPIRATORY TRACT
 Majority of acute viral infections are in the lower
respiratory tract and caused by:
 Influenza virus
 Respiratory syncytial virus
 Common characteristics of infection are:
 Short incubation period of 1 to 4 days
 Transmission from person to person
 Transmission can be direct or indirect
 Direct – through droplets
 Indirect – through hand transfer of contaminated secretions
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INFLUENZA
 Influenza virus is an orthomyxovirus
 Virions are surrounded by an envelope
 Genome is single-stranded RNA in eight
segments
 Allows a high rate of mutation
 Three major serotypes of virus: A, B, and C
 Differences are based on antigens associated with
the nucleoprotein
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
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INFLUENZA
Panel B: © Dennis Kunkel
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA
 Influenza is a significant health concern
 Human virus can combine with an avian virus to
produce a highly pathogenic virus
 Humans are the hosts for influenza
 Birds are the reservoir
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INFLUENZA
 Primary manifestation of infection is severe
respiratory problems
 Outbreaks have been described since the
sixteenth century
 Differ in severity nearly every year
 Occur more frequently in the winter
 Direct droplet transmission most common
method of spreading
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA
 A major outbreak occurs every 2 to 3 years
 Typical epidemic lasts 3 to 6 weeks
 Up to 10% of the general population is affected
 Illness rates exceed 30% in certain groups

In school-aged children

Residents of closed institutions
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA:
Pathogenesis
 Influenza virus prefers the respiratory epithelium
 Viremia is rare
 Virus multiplies in the ciliated cells of lower respiratory
tract
 Results in functional and structural abnormalities
 Cellular synthesis of nucleic acids and proteins is shut
down
 Ciliated and mucus-producing epithelial cells are shed
 Substantial interference with clearance mechanisms
 Localized inflammation
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA:
Pathogenesis
 Respiratory epithelium may not be restored for
2 to 10 weeks
 Viral destruction of tissues causes
inflammation
 Impaired phagocytic and chemotactic
responses can result in superinfection by
bacteria
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA:
Pathogenesis
 Recovery from influenza starts with interferon
 Limits the spread of infection
 Next step is rapid generation of natural killer
cells
 Reverses the infection
 Finally, cytotoxic T cells and specific
antibodies appear in large numbers
 Control the infection
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA:
Pathogenesis
 Acute influenzal syndrome can develop
 Short incubation time – about 2 days
 Symptoms appear in a few hours

Fever, myalgia, headache, and occasional shaking chills
 Maximum severity appears in 6 to 12 hours

Nonproductive cough develops
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA:
Pathogenesis
 Acute influenzal syndrome can develop
 Acute symptoms can last 3 to 5 days
 Usually followed by improvement but a
progressive infection can develop

Affects the tracheobronchial tree and lungs

Lethal pneumonia can occur
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA:
Pathogenesis
 Bacterial superinfections are a serious
complication of influenza
 Usually involves the lungs
 Can develop during the convalescent stage

Patient is debilitated
 Superinfection is identified by an abrupt
worsening of the patient’s condition after
initial stability
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA:
Pathogenesis
 Three bacteria are common causes of
superinfection
 Streptococcus pneumoniae
 Haemophilus influenzae
 Staphylococcus aureus
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA:
Pathogenesis
 Influenza can cause death in three ways:
 Underlying disease

People with limited cardiovascular activity or
pulmonary function
 Superinfection

Bacterial pneumonia and disseminated bacterial disease
 Direct rapid progression

Overwhelming viral pneumonia and asphyxia
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
INFLUENZA:
Treatment
 Two basic approaches
 Symptomatic care
 Anticipation of potential complications
 The best treatments are:
 Rest and fluid intake
 Conservative use of analgesics for myalgia and
headache
 Cough suppressants
 Amantidine and rimantadine are useful only if the
infection is diagnosed within 12-24 hours
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RESPIRATORY SYNCYTIAL
VIRUS (RSV) INFECTION
 Named because of the syncytia associated with
it
 Community outbreaks of RSV occur annually
in late fall to early spring
 Outbreaks last about 8-12 weeks
 Can involve 50% of families with small children

An older sibling usually brings the virus home

Young children or infants are infected most often
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RSV INFECTION
 Virus is shed for 5-7 days
 Up to 20 days in infants
 Major cause of nosocomial infections
 Control of these infections in a hospital is difficult
but helped by:

Attention to hand washing

Exclusion of staff and visitors with respiratory
symptoms
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RSV INFECTION:
Pathogenesis
 Spreads to upper respiratory tract by contact with
infectious secretions
 Infection is usually confined to respiratory
epithelium
 Progresses to the middle and lower airways
 Viremia is rare
 Effect on respiratory epithelium is similar to
influenza
 Cytotoxic T cells have a significant role in
controlling disease
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RSV INFECTION:
Pathogenesis
 Has major pathological consequences in the
bronchi, bronchioles, and alveoli
 Necrosis, interstitial mononuclear cell infiltration,
and inflammation
 Can result in the plugging of the small airways
with mucus, necrotic cells, and fibrin
 Incubation period is 2 to 4 days
 Followed by onset of rhinitis
 Severity peaks within 3 days
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RSV INFECTION:
Pathogenesis
 Clinical signs include:
 Hyperexpansion of lungs
 Hypoxia
 Hypercapnia
 Pulmonary collapse
 Acute signs normally last 10-14 days
 Infection is mild in adults and older children
 Can be fatal in infants
 Fatality rate in hospitalized infants is 1%
 Can be as high as 15% in compromised children
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
RSV INFECTION:
Treatment
 Treatment is directed at the underlying clinical
pathology
 Oxygenation and ventilation
 Close observation to deal with potential bacterial
superinfections
 There is no vaccine
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
HANTAVIRUS PULMONARY
SYNDROME (HPS)
 No recognized hantavirus infection in humans
until 1993
 Virus causes a fulminant respiratory infection
 High mortality rate (50-70%)
 Three types of hantavirus
 Sin Nombre is the most common
 Infections are associated with increases in the
rodent population
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
HPS:
Pathogenesis
 Transmission is via dried rodent excreta
 By inhalation
 Through the conjunctival route
 By direct contact through breaks in the skin
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
FUNGAL INFECTIONS OF THE
RESPIRATORY SYSTEM
 Two major factors govern the incidence and
spread of fungal infection
 Ubiquity of the infectious organisms

Found in soil

Resident flora
 The adaptive immune response

Usually keeps these infections under control

Immunocompromised patients at much greater risk
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PNEUMOCYSTIS PNEUMONIA
(PCP)
 A lethal pneumonia
 Common in AIDS patients
 Caused by the fungus Pneumocystis (carinii)
jiroveci
 Never been grown in culture
 Most information comes from clinical information
from patients
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PCP
 P. (carinii) jiroveci has atypical features
 Shape, nucleus, and spores resemble structures seen in
protozoans
 Plasma membrane has cholesterol – most fungi have
ergosterol
 Showed to be a fungus by RNA typing
 Infection occurs in humans and animals
 Antibodies against it are found in almost all
children by the age of 4 years
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PCP
 Reservoirs and modes of transmission are yet
to be defined
 Transmitted by aerosol in models
 AIDS is the most common predisposing factor
for PCP
 Most patients with AIDS develop it
 P. (carinii) jiroveci has a low level of virulence
 Rarely affects immunocompetent hosts
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PCP:
Pathogenesis
 Little is known about early stages of infection
 A glycoprotein is thought to be involved in
attachment to host cells
 Seems to undergo antigenic variation
 Pneumocystis pneumonia characterized by alveoli
filled with sloughed-off alveolar cells, monocytes,
and fluid
 Produces distinct foamy honeycombed appearance
 Presents as progressive diffuse pneumonitis in
compromised hosts
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PCP:
Pathogenesis
 Onset is insidious in patients with AIDS
 Can be present for 3 to 4 weeks before discovered
 Principal manifestations of infection are:
 Progressive dyspnea
 Tracheal pneumonia
 Eventual cyanosis and hypoxia
 Nonproductive cough in 50 % of patients
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PCP:
Pathogenesis
 X-rays show alveolar infiltrates spreading out
from the hili
 Eventually affects the entire lung
 Causes decreased O2 capability
 Decreased saturation of arterial blood
 Decreased lung vital capacity
 Death occurs through progressive asphyxiation
 In some cases lesions occur in other parts of the
body
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
PCP:
Treatment
 Non AIDS patients
 Combination of trimethoprim and
sulfamethoxazole for 14-21 days
 Patients with AIDS
 Pentamidine and trimetrexate for more than 21
days

Present with more advanced infection

Respond more slowly

Relapse more often
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BLASTOMYCOSIS
 Caused by Blastomyces dermatitidis
 Spores of the fungi enter through the respiratory
system
 Primarily affect the lungs
 Can spread through bloodstream and affect other parts
 Men between ages of 20 and 40 years are the
most commonly infected
 Blastomycosis is not increased in AIDS
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BLASTOMYCOSIS:
Pathogenesis
 Infection of the lungs is gradual
 Fever, chills, and drenching sweats develop
 Chest pain, difficulty breathing, and cough may
also develop
 Can sometimes heal without treatment
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BLASTOMYCOSIS:
Pathogenesis
 When infection spreads it can affect many
areas
 Skin – warty patches develop surrounded by tiny
painless abscesses
 Bones – painful swellings
 Genitourinary tract – prostatitis or painful swelling
of epididymis
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
BLASTOMYCOSIS:
Treatment
 Intravenous amphotericin B or oral
itraconazole
 Patients feel better quickly
 Therapy must be continued for months
 Without treatment, blastomycosis can be fatal
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
HISTOPLASMOSIS
 Caused by Histoplasma capsulatum
 Occurs in soil contaminated with bat or bird
droppings
 Commonly found in temperate, subtropical, and
tropical zones
 50% - 90% of residents in these areas test positive
for exposure
 People who live and work in the vicinity of bat or
bird droppings are at increased risk of infection
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
HISTOPLASMOSIS:
Pathogenesis
 Transmission is through inhalation of conidia
 Small enough to reach bronchioles and alveoli
 Because of minute size, usually referred to as
microconidia
 Most cases are asymptomatic
 Some present with fever and mild cough
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
HISTOPLASMOSIS:
Pathogenesis
 Initial infection pulmonary
 Elements of the mononuclear phagocytic system (lymph
nodes, spleen, and bone marrow) can also be affected
 After inhalation:
 Microconidia convert to yeast form
 These are phagocytosed
 Yeast form survives formation of the phagolysosome

Capture iron which lowers pH of the phagolysosome
 Continue to divide in the cytoplasm of the phagocytic cell
 Tubercles form
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
HISTOPLASMOSIS:
Pathogenesis
 Majority of cases never go further than
tubercle formation
 Some patients develop fever and cough
 Lasts a few days or even weeks
 Severe cases may develop chills, malaise,
chest pain, and extensive pulmonary
infiltration
 These usually resolve spontaneously
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
HISTOPLASMOSIS:
Treatment
 Usually resolves spontaneously and there is no
need for treatment
 Amphotericin B is the treatment of choice if
necessary
 It is toxic
 Used only for short times and only in severe cases
 Itraconazole and ketoconazole are used in
patients with AIDS
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
COCCIDIOIDOMYCOSIS
 Caused by Coccidioides immitis
 Infection can be symptomatic or asymptomatic
 Symptomatic form known as Valley Fever
 Restricted to certain geographical areas
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
COCCIDIOIDOMYCOSIS:
Pathogenesis
 Arthroconidia of the fungus are inhaled
 Small enough to bypass defenses of the upper tract
 Lodge directly in bronchioles
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
COCCIDIOIDOMYCOSIS:
Pathogenesis
 Fungal outer wall has antiphagocytic
properties
 Prevents elimination
 Arthroconidia convert to spherules which
grow slowly
 Completely inhibit phagocytosis
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
COCCIDIOIDOMYCOSIS:
Pathogenesis
 More than half of infected individuals show no
signs of infection
 Remainder progress to valley fever
 Present with malaise, cough, chest pain, fever, and
arthralgia
 All signs occur 1 to 3 weeks after infection begins
 Signs can last for up to 6 weeks
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
COCCIDIOIDOMYCOSIS:
Pathogenesis
 Most patients spontaneously resolve
 Only 10% ever experience pulmonary symptoms
 Disseminated coccidioidomycosis is seen in
patients with AIDS and on immunosuppressive
therapy
 Can also cause a form of coccidioidal meningitis
 Can be fatal if not treated aggressively
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
COCCIDIOIDOMYCOSIS:
Treatment
 Usually self-limiting and no treatment is
required
 Progressive pulmonary infection or infection
of central nervous system is treated with
amphotericin B
 Fluconazole and itraconazole are also effective
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
ASPERGILLOSIS
 Invasive aspergillosis shows a rapid
progression to death
 Typically seen in the immunocompromised
 Particularly patients with leukemia or AIDS
 Patients undergoing bone marrow transplantation
 Also seen in individuals with preexisting
pulmonary disease
 Chronic bronchitis, asthma, and tuberculosis
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
ASPERGILLOSIS
 Caused by the fungus Aspergillus
 Widely distributed and found throughout world
 Dispersal is through inhalation of resistant conidia
 Seen more and more in nosocomial infections
associated with air-conditioning systems
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
ASPERGILLOSIS:
Pathogenesis
 Conidia of Aspergillus are small enough to
reach alveoli when inhaled
 Infection is rare if the immune system is
working properly
 Fungus produces extracellular proteases,
phospholipases, and toxic metabolites
 Their involvement in infection is unknown
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
ASPERGILLOSIS:
Pathogenesis
 Colonization with Aspergillus leads to
invasion of tissues
 Invasion of lung tissue causes penetration of blood
vessels
 This causes hemoptysis and/or acute pneumonia
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
ASPERGILLOSIS:
Pathogenesis
 Pneumonia is accompanied by multifocal
pulmonary infiltrates and high fever
 Prognosis is grave
 Mortality for invasive aspergillosis is 100%
ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd
Edition) © Garland Science
ASPERGILLOSIS:
Treatment
 Amphotericin B and itraconazole can be used
but are usually ineffective

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Ch. 21 Infections of the Respiratory System

  • 1. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science CHAPTER 21 INFECTIONS OF THE RESPIRATORY SYSTEM
  • 2. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science WHY IS THIS IMPORTANT?  The respiratory system is the most commonly infected system  Health care providers will see more respiratory infections than any other type
  • 3. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science OVERVIEW
  • 4. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science THE RESPIRATORY SYSTEM  A major portal of entry for infectious organisms  It is divided into two tracts – upper and lower  The division is based on structures and functions in each part  The two parts have different types of infection
  • 5. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science THE RESPIRATORY SYSTEM  The upper respiratory tract:  Nasal cavity, sinuses, pharynx, and larynx  Infections are fairly common  Usually nothing more than an irritation  The lower respiratory tract:  Lungs and bronchi  Infections are more dangerous  Can be very difficult to treat
  • 6. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science ANATOMY OF THE RESPIRATORY SYSTEM  The most accessible system in the body  Breathing brings in clouds of potentially infectious pathogens  The body has a variety of host defense mechanisms  Innate immune response  Adaptive immune response
  • 7. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science ANATOMY OF THE RESPIRATORY SYSTEM
  • 8. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science ANATOMY OF THE RESPIRATORY SYSTEM  Upper respiratory tract is continuously exposed to potential pathogens  Lower respiratory tract is essentially a sterile environment
  • 9. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PATHOGENS OF THE RESPIRATORY SYSTEM  Many bacterial organisms infect the respiratory system  Upper respiratory tract also portal of entry for viral pathogens  Vaccination has eliminated many respiratory infections  Some still seen in underdeveloped parts of the world
  • 10. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PATHOGENS OF THE RESPIRATORY SYSTEM
  • 11. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PATHOGENS OF THE RESPIRATORY SYSTEM  Respiratory pathogens are easily transmitted from human to human  They circulate within a community  Infections spread easily  Some respiratory pathogens exist as part of the normal flora  Others are acquired from animal sources – zoonotic infections  Q fever from farm animals  Psittacosis from parrots and other birds
  • 12. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PATHOGENS OF THE RESPIRATORY SYSTEM  Water can be a source of respiratory infections  Legionellosis  Contaminated water can be aerosolized  Droplets can be inhaled and infection can result
  • 13. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PATHOGENS OF THE RESPIRATORY SYSTEM  Fungi are also a source of respiratory infection  Usually in immunocompromised patients  Most dangerous are Aspergillus and Pneumocystis
  • 14. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PATHOGENS OF THE RESPIRATORY SYSTEM  Some pathogens are restricted to certain sites  Legionella only infects the lung  Other pathogens cause infection in multiple sites  Streptococcus can cause:  Middle ear infections  Sinusitis  Pneumonia
  • 15. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science SITES OF INFECTION  Frequent sites of infection are:  Middle ear  Mastoid cavity  Nasal sinuses  Nasopharynx
  • 16. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DEFENSES OF THE RESPIRATORY SYSTEM  The respiratory system has significant defenses  The upper respiratory tract has:  Mucociliary escalator  Coughing  The lower respiratory tract has:  Alveolar macrophages
  • 17. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DEFENSES OF THE RESPIRATORY SYSTEM
  • 18. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BACTERIA INFECTING THE RESPIRATORY SYSTEM  Can be divided into groups depending on the infections they cause  Otitis media, sinusitis, and mastoiditis  Pharyngitis  Typical and atypical community-acquired pneumonia  Hospital-acquired (nosocomial) pneumonia
  • 19. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BACTERIA INFECTING THE RESPIRATORY SYSTEM
  • 20. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BACTERIA INFECTING THE RESPIRATORY SYSTEM
  • 21. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BACTERIAL INFECTIONS OF THE UPPER RESPIRATORY TRACT  Otitis media, mastoiditis, and sinusitis  Pharyngitis  Scarlet fever  Diphtheria
  • 22. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science OTITIS MEDIA, MASTOIDITIS, AND SINUSITIS  Middle ear, mastoid cavity, and sinuses are connected to the nasopharynx  Sinuses and eustachian tubes have ciliated epithelial cells  A virus initially invades the ciliated epithelium  This destroys the ciliated cells, allowing bacteria to invade  Mastoiditis is uncommon but very dangerous  Mastoid cavity is close to the nervous system and large blood vessels
  • 23. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PHARYNGITIS  A variety of bacteria can cause infection in the pharynx  A classic infection is strep throat  Caused by Streptococcus pyogenes  Contains M proteins which inhibits phagocytosis  Produces pyrogenic toxins which cause the symptoms seen with pharyngitis  Group A streptococci can cause abscesses on the tonsils  S. pyogenes can cause scarlet fever and toxic shock syndrome
  • 24. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PHARYNGITIS © CDC/Dr. Heinz F. Eichenwald
  • 25. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PHARYNGITIS
  • 26. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science SCARLET FEVER  Caused by Group A streptococci  Usually seen in children under age of 18 years
  • 27. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science SCARLET FEVER: Pathogenesis  Symptoms usually begin with appearance of a rash  Tiny bumps on the chest and abdomen  Can spread over the entire body  Appears redder in armpits and groin  Rash lasts 2-5 days
  • 28. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science SCARLET FEVER: Pathogenesis  Symptoms can also include:  Very sore throat with yellow or white papules  Fever of 101˚F or higher  Lymphadenopathy in neck  Headache, body aches, and nausea
  • 29. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science SCARLET FEVER: Treatment  A variety of antibiotic therapies is available
  • 30. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA  Caused by the toxin produced by Corynebacterium diphtheriae  A potent inhibitor of protein synthesis  It is a localized infection  Presents as severe pharyngitis  Can be accompanied by plaque-like pseudomembrane in the throat
  • 31. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA © Visuals Unlimited
  • 32. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA  Toxemia can make diphtheria life-threatening  Can involve multiple organ systems  Can cause acute myocarditis  Diphtheria is transmitted by:  Droplet aerosol  Direct contact with skin  Fomites (to a lesser degree)
  • 33. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA: Vaccination  Vaccination against diphtheria is part of the DTaP protocol  Infection is rare when vaccination is in place  Diphtheria still occurs frequently in some parts of the world  Particularly where conditions do not permit vaccination
  • 34. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA: Pathogenesis  Corynebacterium diphtheriae is a small Gram- positive bacillus  Has V and L forms  Forms are caused by a unique cell division process – snapping
  • 35. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA: Pathogenesis © CDC
  • 36. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA: Pathogenesis  Corynebacterium is poorly invasive  Effects of infection are due to the exotoxin  The exotoxin has two polypeptide chains  B chain – entry into the target  A chain – inhibition of protein synthesis
  • 37. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA: Pathogenesis  Local effects include epithelial cell necrosis and inflammation  Pseudomembrane is composed of a mixture of fibrin, leukocytes, cell debris  Size varies from small and localized to extensive  An extensive membrane can cover the trachea  Diphtheria can also be systemic, causing acute myocarditis  Tox genes that code for the toxin regulated by operons
  • 38. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA: Pathogenesis  Incubation takes two to four days  Disease usually presents as pharyngitis or tonsillitis with fever, sore throat, and malaise  Pseudomembrane can develop on tonsils, uvula, soft palate, or pharyngeal walls  May extend downward toward larynx and trachea
  • 39. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA: Pathogenesis  Uncomplicated cases resolve spontaneously  Membrane is coughed up in days  Complicated cases are due to respiratory obstruction  Can result in suffocation  Systemic infection can result in myocarditis  Diphtheria can also cause infections of the skin  Simple pustules or chronic nonhealing ulcerations
  • 40. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science DIPHTHERIA: Treatment  Toxin neutralization is the most important  Must be done as quickly as possible  Antitoxin can only neutralize free toxin  Pathogen elimination is also important  Corynebacterium diphtheriae is sensitive to many antibiotics
  • 41. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science VIRAL INFECTIONS OF THE UPPER RESPIRATORY TRACT  Rhinovirus infection (the common cold)  Parainfluenza
  • 42. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RHINOVIRUS INFECTION  There are several hundred serotypes of rhinovirus  Fewer than half have been characterized  50% are picornaviruses  Extremely small, non-enveloped, single-stranded RNA viruses  Optimum temperature for picornavirus growth is 33˚C  The temperature in the nasopharynx
  • 43. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RHINOVIRUS INFECTION: Pathogenesis  The glycoprotein ICAM is the cellular receptor  Rhinovirus is the major cause of mild upper respiratory infections  Known as the common cold virus  Affects people of all ages, especially older children and adults  Infection is seen throughout the year  Usually epidemic in spring and early fall  Infection is rarely seen in the lower respiratory tract
  • 44. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RHINOVIRUS INFECTION: Pathogenesis  Incubation period is 2-3 days  Acute symptoms can last for 3-7 days  Infection is usually mild  Little damage to the body
  • 45. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RHINOVIRUS INFECTION: Treatment  There is no specific therapy or treatment
  • 46. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PARAINFLUENZA  There are four types of parainfluenza virus  All belong to the paramyxovirus group  Single-stranded enveloped RNA viruses  Contain hemagglutinin and neuraminidase  Transmission and pathology similar to influenza virus, but there are differences  Parainfluenza virus replicates in the cytoplasm  Influenza virus replicates in the nucleus
  • 47. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PARAINFLUENZA  Parainfluenza is genetically more stable than influenza  Very little mutation  Little antigenic drift  No antigenic shift  Parainfluenza is a serious problem in infants and small children  Only a transitory immunity to reinfection  Infection becomes milder as the child ages
  • 48. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PARAINFLUENZA INFECTION: Pathogenesis  Onset of infection may be abrupt  Can appear as an acute spasmodic croup  Progresses over 1-3 days to involve the lower respiratory tract  Duration of the illness between 4 and 21 days  Usually 7-10 days
  • 49. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PARAINFLUENZA INFECTION: Pathogenesis  Type 1 parainfluenza virus  Major cause of laryngotracheitis (acute croup) in infants and young children  Causes severe upper respiratory illness (pharyngitis and tracheobronchitis) in all age groups  Outbreaks usually in the fall
  • 50. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PARAINFLUENZA INFECTION: Pathogenesis  Type 3 parainfluenza virus  Major cause of severe lower respiratory infection in infants and young children  Causes bronchitis and pneumonia in children less than one year of age  Infections can occur throughout the year  50% of all children are exposed to this virus during their first year of life
  • 51. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PARAINFLUENZA INFECTION: Treatment  There is currently no method of treatment
  • 52. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BACTERIAL INFECTIONS OF THE LOWER RESPIRATORY TRACT  Bacterial pneumonia  Chlamydial pneumonia  Mycoplasma pneumonia  Tuberculosis  Pertussis  Inhalation anthrax  Legionella pneumonia (Legionnaire’s disease)  Q fever  Psittacosis (Ornithosis)
  • 53. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BACTERIAL PNEUMONIA  One of the most serious lower respiratory tract infections  Can be divided into two types:  Community-acquired  Nosocomial  Each type can be caused by a variety of organisms
  • 54. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BACTERIAL PNEUMONIA  Nosocomial pneumonia  Occurs approximately 48 hours after admission to hospital  Usually associated with Staphylococcus aureus  Also caused by Gram-negative bacteria  Particularly difficult to deal with if pathogen is resistant to antibiotics  Community-acquired pneumonia  Usually presents as a lobar pneumonia  Accompanied by fever, chest pain, and production of purulent sputum
  • 55. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BACTERIAL PNEUMONIA  Atypical pneumonia  Coughing without sputum  Caused by a variety of bacteria  Bacterial pneumonia can progress to the production of lung abscesses
  • 56. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science NOSOCOMIAL PNEUMONIA: Pathogenesis  Hospital is clinically dangerous  Large number of pathogens  Large number of debilitated patients  Debilitation causes increased proteolytic enzyme activity in saliva  Contributes to the rapid turnover of the fibronectin layer  This layer covers the epithelium of the pharynx  Without fibronectin, it can become colonized with opportunistic pathogens  These can be aspirated into the lungs and cause pneumonia
  • 57. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science NOSOCOMIAL PNEUMONIA: Pathogenesis
  • 58. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science COMMUNITY-ACQUIRED PNEUMONIA: Pathogenesis  Usually occurs after the aspiration of pathogens  Requires enough pathogens to overwhelm resident defenses  Establishment of an infection in the lungs depends on:  The number of pathogens entering  The competence of the mucociliary escalator
  • 59. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science COMMUNITY-ACQUIRED PNEUMONIA: Pathogenesis  Classical lobar pneumonia has four stages:  Acute congestion  Local capillaries become engorged with neutrophils.  Red hepatization  Red blood cells from the capillaries flow into the alveolar spaces.  Gray hepatization  Large numbers of dead neutrophils and degenerating red cells  Resolution  Adaptive immune response begins to produce antibodies.  These control the infection
  • 60. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BACTERIAL PNEUMONIA: Treatment  Course of treatment depends on:  Severity of the infection  Type of organism causing the infection  Most common pathogen is Streptococcus pneumoniae  Treated with penicillin, amoxicillin-clavulanate, and erythromycin  Other antibiotics used are:  Cefuroxime, ofloxacin, and trimethoprim- sulfamethoxazole
  • 61. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science CHLAMYDIAL PNEUMONIA  Caused by Chlamydia pneumoniae:  Found throughout the world  Responsible for 10% of pneumonia cases  Infection occurs throughout the year  Spread by person-to-person contact  More infections in the elderly  Can cause both community-acquired and nosocomial infections
  • 62. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science CHLAMYDIAL PNEUMONIA: Pathogenesis  Disease can present as:  Pharyngitis  Lower-respiratory-tract infection  Both  It is clinically similar to Mycoplasma pneumonia  Initial pharyngitis lasts for 1-3 weeks  Replaced by persistent cough lasting for weeks
  • 63. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science CHLAMYDIAL PNEUMONIA: Treatment  Tetracycline or erythromycin is effective
  • 64. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science MYCOPLASMA PNEUMONIA  Mild form of pneumonia  Accounts for about 10% of all pneumonias  Referred to as walking pneumonia  No need for hospitalization  Most common age for infections between 5 and 15 years  Causes approximately 30% of all teenage pneumonias
  • 65. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science MYCOPLASMA PNEUMONIA  Caused by Mycoplasma pneumoniae  Lacks a cell wall  Acquired by droplet transmission  Infectious dose fewer than 100 pathogens  Found throughout the world, especially in temperate climates
  • 66. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science MYCOPLASMA PNEUMONIA: Pathogenesis  Incubation period is between 2 and 15 days  Infection has an insidious onset  Fever, headache, and malaise for 2 to 4 days  Then appearance of respiratory symptoms  Infection affects the trachea, bronchi, and bronchioles  May extend down to the alveoli
  • 67. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science MYCOPLASMA PNEUMONIA: Pathogenesis  Bacteria initially attach to the cilia and microvilli on cells lining the bronchial epithelium  Attachment interferes with ciliary action causing:  Detachment of the mucosal layer  Inflammation and appearance of exudates  Inflammatory response is initially composed of lymphocytes, plasma, macrophages
  • 68. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science MYCOPLASMA PNEUMONIA: Pathogenesis  Organism can be shed in upper respiratory secretions for:  2 to 8 days before symptoms appear  Up to 14 weeks after symptoms subside
  • 69. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science MYCOPLASMA PNEUMONIA: Pathogenesis  Infection causes:  Mild tracheobronchitis  Fever, cough, headache, and malaise  Infection sometimes causes:  Sore throat  Otitis media
  • 70. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science MYCOPLASMA PNEUMONIA: Treatment  Usual treatment is erythromycin or tetracycline  Can shorten the clinical symptoms  Organism remains in the nasopharynx for long periods after the symptoms have subsided
  • 71. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS  An estimated 2 billion people are infected  1.5 million die each year  AIDS and HIV infection have had a significant role in the increase of tuberculosis  They increase the efficiency of the tuberculosis transmission cycle  Poverty and poor socioeconomic conditions are breeding grounds for tuberculosis
  • 72. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS  Drug resistance is becoming increasingly dangerous  A major reason for resistance is noncompliance  Many patients stop taking the drugs early  Early detection is vital  Initial symptoms are similar to those seen in other respiratory infections – it is important to look for:  Fever  Fatigue  Weight loss  Chest pain  Shortness of breath  Congestion with coughing
  • 73. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS  Caused by Mycobacterium tuberculosis  Rod-shaped bacillus  Acid-fast  Nonspore forming  Produces mycolic acid  Makes it difficult to Gram stain  Protects the pathogen from antibiotic therapy and host defenses
  • 74. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS © CDC/Dr. George P. Kubica
  • 75. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS: Pathogenesis  For healthy people, tuberculosis is a self- limiting disease  Host defenses deal with it effectively  Tuberculosis can be serious if cell-mediated immunity is compromised or inefficient
  • 76. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS: Pathogenesis  M. tuberculosis cell wall interferes with macrophage function and T-cell activation  Inhibits the formation of the phagolysosome  This allows it to escape into the cytoplasm where it:  Increases in number  Eventually spreads to the lymph nodes  From here it enters the blood and is distributed throughout the body
  • 77. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS: Pathogenesis  Cell wall components attract T cells and macrophages  Uncontrollable release of enzymes that destroy tissues  Necrosis results  Necrosis in the lung liquefies  Spreads to adjacent areas  Causes the cycle to continue
  • 78. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS: Pathogenesis © CDC
  • 79. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS: Pathogenesis  Two basic types of tuberculosis  Primary  Follows initial exposure to the pathogen  Secondary  Can occur years later
  • 80. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PRIMARY TUBERCULOSIS: Pathogenesis  Occurs when a host encounters pathogen for the first time  Organisms find their way to the alveoli  A localized inflammatory response develops  Phagocytosis of the bacilli by macrophages and neutrophils
  • 81. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PRIMARY TUBERCULOSIS: Pathogenesis  Pathogens are not killed, they:  Are transported by white cells to the regional lymph nodes  Continue to divide intracellularly  Cell-mediated immune response begins  If the primary lesion is not contained, tubercles form
  • 82. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PRIMARY TUBERCULOSIS: Pathogenesis  Tubercles are aggregates of enlarged macrophages filled with bacteria  Can be surrounded by fibroblasts and lymphocytes  Center of the tubercle can undergo caseous necrosis  May calcify – Ghon complexes  Readily seen on X-rays
  • 83. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PRIMARY TUBERCULOSIS: Pathogenesis  Most primary infections become quiescent and asymptomatic  About 10% evolve into clinical disease  Bacilli spread through the lymphatic channels, bloodstream, and gastrointestinal system and cause:  Tuberculous meningitis  Miliary (disseminated) tuberculosis  Both  Localized tubercles discharge their contents  Can be aspirated and distributed to other parts of the lungs
  • 84. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science SECONDARY TUBERCULOSIS: Pathogenesis  Secondary tuberculosis can be due to:  Reactivation of old lesions  Gradual progression of primary tuberculosis into chronic disease  Recurrence of disease occurs in a small percentage of patients  Usually manifests itself in the apices of the lungs  Usually occurs within two years of the primary infection  It can evolve decades later when innate resistance is diminished
  • 85. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS: Treatment  Usually a triple therapy containing:  Isoniazid (INH)  Pyrazinamide (PZA)  Rifampicin (RFP)  All three are taken once a day for two months  INH and RFP are taken for nine more months  If the strain is drug-resistant, initial treatment includes ethambutol
  • 86. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS: Treatment  Compliance with the drug therapy is very important  Compliance can be difficult because of side effects  The drugs are very toxic  Most serious is liver toxicity
  • 87. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science TUBERCULOSIS: Treatment  Directly observed therapy (DOT) is used to prevent multi-drug-resistant tuberculosis  DOT involves delivery of scheduled doses of medication by a health care worker  Patient’s ingestion or injection of drugs is directly administered, observed, and documented  Ensures that patients receive medication  DOT helps prevent:  Spread of tuberculosis  Occurrence of multi-drug-resistant tuberculosis
  • 88. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PERTUSSIS (WHOOPING COUGH)  Spread by airborne droplets from patients in the early stages  Highly contagious  Infects 80-100% of exposed susceptible individuals  Spreads rapidly in schools, hospitals, offices, and homes – just about anywhere
  • 89. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PERTUSSIS  Caused by Bordetella pertussis  Gram-negative coccobacillus  Does not survive in the environment  Reservoir is humans  Symptoms can be similar to those of a cold.  Infected adults often spread the infection to schools and nurseries
  • 90. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PERTUSSIS  Mortality is highest in infants and children under 1 year old  Immunization against pertussis started in the 1940s.  Continues today as part of DTaP vaccination  Pertussis appears to be making a comeback  Epidemics are occurring every 3-5 years  Greatest numbers of infections are among 10-20 year-olds  People who were not immunized  Shows a relationship between lack of vaccination and infection
  • 91. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PERTUSSIS: Pathogenesis  Bordetella pertussis has an affinity for ciliated bronchial epithelium  After attaching, it produces a tracheal toxin  Immobilizes and progressively destroys the ciliated cells  Causes persistent coughing  Caused by the inability to move the mucus that builds up  Pertussis does not invade cells of the respiratory tract or deeper tissues  Incubation period is 7 to 10 days
  • 92. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PERTUSSIS: Pathogenesis  Infection has three stages:  Catarrhal stage – 1-2 weeks  Persistent perfuse and mucoid rhinorrhea (runny nose)  May have sneezing, malaise, and anorexia  Most communicable during this stage
  • 93. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PERTUSSIS: Pathogenesis  Infection has three stages:  Paroxysmal stage  Persistent coughing  Up to 50 times a day for 2 to 4 weeks  Characteristic whooping sound is heard  Patient’s trying to catch his/her breath  Apnea may follow the coughing, especially in infants  Significant increase in lymphocytes
  • 94. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PERTUSSIS: Pathogenesis  Infection has three stages:  Convalescent stage  Frequency and severity of coughing and other symptoms gradually decrease
  • 95. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PERTUSSIS: Pathogenesis  Most common complications of pertussis are:  Superinfection with Streptococcus pneumonia  Convulsions  Subconjunctival and cerebral bleeding and anoxia
  • 96. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PERTUSSIS: Treatment  Antibiotics can be used in the early stages  Limits the spread of infection  Once the paroxysmal stage is reached, therapy is only supportive  Vaccination is the best option
  • 97. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INHALATION ANTHRAX  Produces a fulminate pneumonia  Comes on suddenly with great severity  Leads to respiratory failure and death  Anthrax primarily a disease of herbivores  Acquired from spores found in pastures  If spores are inhaled, anthrax can occur in the respiratory tract
  • 98. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INHALATION ANTHRAX  Infection is infrequently seen in healthy individuals  Usually presents as localized lesions where it occurs.  Has been recent interest in inhalation anthrax as a biological weapon  In October 2001, letters contaminated with powdered anthrax spores were mailed to various locations in the US.  Several deaths resulted
  • 99. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INHALATION ANTHRAX: Pathogenesis  The causative agent is Bacillus anthracis  Gram-positive rod  Spore-forming  Spores germinate in human tissues  Antiphagocytic properties of the capsule aid its survival and growth in large numbers
  • 100. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INHALATION ANTHRAX: Pathogenesis  Pathogenesis results from the powerful exotoxin produced  Symptoms of pulmonary anthrax are:  1-5 days of nonspecific malaise, mild fever, nonproductive cough  Progressive respiratory distress and cyanosis  Rapid and massive spread to the central nervous system and bloodstream is followed by death
  • 101. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INHALATION ANTHRAX: Treatment  Antibiotic therapy can be successful  B. anthracis is susceptible to penicillin  Doxycycline and ciprofloxacin are alternative prophylactics
  • 102. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA (LEGIONNAIRES’ DISEASE)  Caused by Legionella pneumophila  Gram-negative rod  Cannot be stained or grown using normal techniques
  • 103. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA © CDC/Science Photo Library
  • 104. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA  Unrecognized as a disease before 1976  Legionella is ubiquitous in fresh water  Lives within Acanthamoeba organisms  These are infectious reservoirs  Transmitted to humans as a humidified aerosol  Person-to-person transmission has never been seen
  • 105. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA  Healthy people not affected very often  Many cases go undetected  Legionella has low virulence for humans  Infection is seen in less than 5% of population  Usually in the immunocompromised
  • 106. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA: Pathogenesis  Legionella is a facultative intracellular parasite  Aggressively attacks the lungs  Produces a necrotizing multifocal pneumonia  Involves alveoli and terminal bronchioles  The inflammatory response produces an exudate containing:  Fibrin, polymorphonuclear leukocytes, and red blood cells
  • 107. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA: Pathogenesis  Organisms inhaled enter the alveoli  Infect alveolar macrophages  Produce an endocytic vesicle  Continue replication  Prevent fusion of the vesicle with lysosomes  Infected macrophages show a coiled morphology
  • 108. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA: Pathogenesis Photo courtesy of Marcus Horwitz.
  • 109. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA: Pathogenesis  Disease causes severe toxic pneumonia  Begins with myalgia and headache  Followed by rapidly rising fever  Chills, pleuritic chest pain, vomiting, and diarrhea  Occasional confusion and delirium  Interstitial infiltrates in lung are seen on X-ray  Can also cause hepatic dysfunction
  • 110. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA: Pathogenesis  Serious cases show progressive illness over 3 to 6 days  Ends in shock or respiratory failure  Mortality rate is about 15%  Can be as high as 50% in hospital outbreaks  High population of the immunocompromised or immunosuppressed
  • 111. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science LEGIONELLA PNEUMONIA: Treatment  Erythromycin is better than penicillin  Legonella produces a β-lactamase  Tetracycline, rifampin, and quinolones are effective  Azithromycin and clarithromycin are the agents of choice
  • 112. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science Q FEVER  A zoonotic infection seen wordwide  Cattle, sheep, and goats are the primary reservoirs for humans  Caused by Coxiella burnetii  Gram-negative  Spore-forming  Grows well in placenta of animals  Large numbers of Coxiella can be transmitted by inhalation during animal births  Transmission can also be by ingestion of unpasteurized milk
  • 113. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science Q FEVER: Pathogenesis  Not clearly understood  Begins 9 to 20 days after inhalation  Abrupt onset of chills, fever, and headache  Can also be a mild hacking cough and patchy interstitial pneumonia  Some cases show abnormal liver function
  • 114. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science Q FEVER: Treatment  Most cases resolve spontaneously  Tetracycline can be given to shorten fever  Reduces risk of rare chronic infection
  • 115. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PSITTACOSIS (ORNITHOSIS)  Zoonotic pneumonia  Contracted by inhalation of bird droppings infected with Chlamydophila psittaci  Found in many birds, including turkeys  Some strains of C. psittaci are extremely contagious
  • 116. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PSITTACOSIS: Pathogenesis  Presents as an acute infection of the lower respiratory tract  Acute onset of fever, headache, malaise, muscle aches, dry hacking cough, and bilateral pneumonia  Occasional systemic complications include:  Myocarditis, endocarditis, and hepatitis  Splenomegaly and hepatomegaly can also occur
  • 117. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PSITTACOSIS: Treatment  Tetracycline and erythromycin are effective if given early
  • 118. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science VIRAL INFECTIONS OF THE LOWER RESPIRATORY TRACT  75-80% of all acute respiratory tract infections in the US are of viral origin  Everyone has 3 or 4 per year  Incidence varies inversely with age  Greatest in young children
  • 119. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science VIRAL INFECTIONS OF THE LOWER RESPIRATORY TRACT  Majority of acute viral infections are in the lower respiratory tract and caused by:  Influenza virus  Respiratory syncytial virus  Common characteristics of infection are:  Short incubation period of 1 to 4 days  Transmission from person to person  Transmission can be direct or indirect  Direct – through droplets  Indirect – through hand transfer of contaminated secretions
  • 120. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA  Influenza virus is an orthomyxovirus  Virions are surrounded by an envelope  Genome is single-stranded RNA in eight segments  Allows a high rate of mutation  Three major serotypes of virus: A, B, and C  Differences are based on antigens associated with the nucleoprotein
  • 121. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA Panel B: © Dennis Kunkel
  • 122. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA  Influenza is a significant health concern  Human virus can combine with an avian virus to produce a highly pathogenic virus  Humans are the hosts for influenza  Birds are the reservoir
  • 123. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA  Primary manifestation of infection is severe respiratory problems  Outbreaks have been described since the sixteenth century  Differ in severity nearly every year  Occur more frequently in the winter  Direct droplet transmission most common method of spreading
  • 124. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA  A major outbreak occurs every 2 to 3 years  Typical epidemic lasts 3 to 6 weeks  Up to 10% of the general population is affected  Illness rates exceed 30% in certain groups  In school-aged children  Residents of closed institutions
  • 125. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA: Pathogenesis  Influenza virus prefers the respiratory epithelium  Viremia is rare  Virus multiplies in the ciliated cells of lower respiratory tract  Results in functional and structural abnormalities  Cellular synthesis of nucleic acids and proteins is shut down  Ciliated and mucus-producing epithelial cells are shed  Substantial interference with clearance mechanisms  Localized inflammation
  • 126. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA: Pathogenesis  Respiratory epithelium may not be restored for 2 to 10 weeks  Viral destruction of tissues causes inflammation  Impaired phagocytic and chemotactic responses can result in superinfection by bacteria
  • 127. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA: Pathogenesis  Recovery from influenza starts with interferon  Limits the spread of infection  Next step is rapid generation of natural killer cells  Reverses the infection  Finally, cytotoxic T cells and specific antibodies appear in large numbers  Control the infection
  • 128. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA: Pathogenesis  Acute influenzal syndrome can develop  Short incubation time – about 2 days  Symptoms appear in a few hours  Fever, myalgia, headache, and occasional shaking chills  Maximum severity appears in 6 to 12 hours  Nonproductive cough develops
  • 129. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA: Pathogenesis  Acute influenzal syndrome can develop  Acute symptoms can last 3 to 5 days  Usually followed by improvement but a progressive infection can develop  Affects the tracheobronchial tree and lungs  Lethal pneumonia can occur
  • 130. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA: Pathogenesis  Bacterial superinfections are a serious complication of influenza  Usually involves the lungs  Can develop during the convalescent stage  Patient is debilitated  Superinfection is identified by an abrupt worsening of the patient’s condition after initial stability
  • 131. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA: Pathogenesis  Three bacteria are common causes of superinfection  Streptococcus pneumoniae  Haemophilus influenzae  Staphylococcus aureus
  • 132. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA: Pathogenesis  Influenza can cause death in three ways:  Underlying disease  People with limited cardiovascular activity or pulmonary function  Superinfection  Bacterial pneumonia and disseminated bacterial disease  Direct rapid progression  Overwhelming viral pneumonia and asphyxia
  • 133. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science INFLUENZA: Treatment  Two basic approaches  Symptomatic care  Anticipation of potential complications  The best treatments are:  Rest and fluid intake  Conservative use of analgesics for myalgia and headache  Cough suppressants  Amantidine and rimantadine are useful only if the infection is diagnosed within 12-24 hours
  • 134. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RESPIRATORY SYNCYTIAL VIRUS (RSV) INFECTION  Named because of the syncytia associated with it  Community outbreaks of RSV occur annually in late fall to early spring  Outbreaks last about 8-12 weeks  Can involve 50% of families with small children  An older sibling usually brings the virus home  Young children or infants are infected most often
  • 135. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RSV INFECTION  Virus is shed for 5-7 days  Up to 20 days in infants  Major cause of nosocomial infections  Control of these infections in a hospital is difficult but helped by:  Attention to hand washing  Exclusion of staff and visitors with respiratory symptoms
  • 136. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RSV INFECTION: Pathogenesis  Spreads to upper respiratory tract by contact with infectious secretions  Infection is usually confined to respiratory epithelium  Progresses to the middle and lower airways  Viremia is rare  Effect on respiratory epithelium is similar to influenza  Cytotoxic T cells have a significant role in controlling disease
  • 137. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RSV INFECTION: Pathogenesis  Has major pathological consequences in the bronchi, bronchioles, and alveoli  Necrosis, interstitial mononuclear cell infiltration, and inflammation  Can result in the plugging of the small airways with mucus, necrotic cells, and fibrin  Incubation period is 2 to 4 days  Followed by onset of rhinitis  Severity peaks within 3 days
  • 138. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RSV INFECTION: Pathogenesis  Clinical signs include:  Hyperexpansion of lungs  Hypoxia  Hypercapnia  Pulmonary collapse  Acute signs normally last 10-14 days  Infection is mild in adults and older children  Can be fatal in infants  Fatality rate in hospitalized infants is 1%  Can be as high as 15% in compromised children
  • 139. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science RSV INFECTION: Treatment  Treatment is directed at the underlying clinical pathology  Oxygenation and ventilation  Close observation to deal with potential bacterial superinfections  There is no vaccine
  • 140. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science HANTAVIRUS PULMONARY SYNDROME (HPS)  No recognized hantavirus infection in humans until 1993  Virus causes a fulminant respiratory infection  High mortality rate (50-70%)  Three types of hantavirus  Sin Nombre is the most common  Infections are associated with increases in the rodent population
  • 141. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science HPS: Pathogenesis  Transmission is via dried rodent excreta  By inhalation  Through the conjunctival route  By direct contact through breaks in the skin
  • 142. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science FUNGAL INFECTIONS OF THE RESPIRATORY SYSTEM  Two major factors govern the incidence and spread of fungal infection  Ubiquity of the infectious organisms  Found in soil  Resident flora  The adaptive immune response  Usually keeps these infections under control  Immunocompromised patients at much greater risk
  • 143. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PNEUMOCYSTIS PNEUMONIA (PCP)  A lethal pneumonia  Common in AIDS patients  Caused by the fungus Pneumocystis (carinii) jiroveci  Never been grown in culture  Most information comes from clinical information from patients
  • 144. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PCP  P. (carinii) jiroveci has atypical features  Shape, nucleus, and spores resemble structures seen in protozoans  Plasma membrane has cholesterol – most fungi have ergosterol  Showed to be a fungus by RNA typing  Infection occurs in humans and animals  Antibodies against it are found in almost all children by the age of 4 years
  • 145. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PCP  Reservoirs and modes of transmission are yet to be defined  Transmitted by aerosol in models  AIDS is the most common predisposing factor for PCP  Most patients with AIDS develop it  P. (carinii) jiroveci has a low level of virulence  Rarely affects immunocompetent hosts
  • 146. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PCP: Pathogenesis  Little is known about early stages of infection  A glycoprotein is thought to be involved in attachment to host cells  Seems to undergo antigenic variation  Pneumocystis pneumonia characterized by alveoli filled with sloughed-off alveolar cells, monocytes, and fluid  Produces distinct foamy honeycombed appearance  Presents as progressive diffuse pneumonitis in compromised hosts
  • 147. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PCP: Pathogenesis  Onset is insidious in patients with AIDS  Can be present for 3 to 4 weeks before discovered  Principal manifestations of infection are:  Progressive dyspnea  Tracheal pneumonia  Eventual cyanosis and hypoxia  Nonproductive cough in 50 % of patients
  • 148. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PCP: Pathogenesis  X-rays show alveolar infiltrates spreading out from the hili  Eventually affects the entire lung  Causes decreased O2 capability  Decreased saturation of arterial blood  Decreased lung vital capacity  Death occurs through progressive asphyxiation  In some cases lesions occur in other parts of the body
  • 149. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science PCP: Treatment  Non AIDS patients  Combination of trimethoprim and sulfamethoxazole for 14-21 days  Patients with AIDS  Pentamidine and trimetrexate for more than 21 days  Present with more advanced infection  Respond more slowly  Relapse more often
  • 150. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BLASTOMYCOSIS  Caused by Blastomyces dermatitidis  Spores of the fungi enter through the respiratory system  Primarily affect the lungs  Can spread through bloodstream and affect other parts  Men between ages of 20 and 40 years are the most commonly infected  Blastomycosis is not increased in AIDS
  • 151. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BLASTOMYCOSIS: Pathogenesis  Infection of the lungs is gradual  Fever, chills, and drenching sweats develop  Chest pain, difficulty breathing, and cough may also develop  Can sometimes heal without treatment
  • 152. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BLASTOMYCOSIS: Pathogenesis  When infection spreads it can affect many areas  Skin – warty patches develop surrounded by tiny painless abscesses  Bones – painful swellings  Genitourinary tract – prostatitis or painful swelling of epididymis
  • 153. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science BLASTOMYCOSIS: Treatment  Intravenous amphotericin B or oral itraconazole  Patients feel better quickly  Therapy must be continued for months  Without treatment, blastomycosis can be fatal
  • 154. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science HISTOPLASMOSIS  Caused by Histoplasma capsulatum  Occurs in soil contaminated with bat or bird droppings  Commonly found in temperate, subtropical, and tropical zones  50% - 90% of residents in these areas test positive for exposure  People who live and work in the vicinity of bat or bird droppings are at increased risk of infection
  • 155. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science HISTOPLASMOSIS: Pathogenesis  Transmission is through inhalation of conidia  Small enough to reach bronchioles and alveoli  Because of minute size, usually referred to as microconidia  Most cases are asymptomatic  Some present with fever and mild cough
  • 156. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science HISTOPLASMOSIS: Pathogenesis  Initial infection pulmonary  Elements of the mononuclear phagocytic system (lymph nodes, spleen, and bone marrow) can also be affected  After inhalation:  Microconidia convert to yeast form  These are phagocytosed  Yeast form survives formation of the phagolysosome  Capture iron which lowers pH of the phagolysosome  Continue to divide in the cytoplasm of the phagocytic cell  Tubercles form
  • 157. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science HISTOPLASMOSIS: Pathogenesis  Majority of cases never go further than tubercle formation  Some patients develop fever and cough  Lasts a few days or even weeks  Severe cases may develop chills, malaise, chest pain, and extensive pulmonary infiltration  These usually resolve spontaneously
  • 158. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science HISTOPLASMOSIS: Treatment  Usually resolves spontaneously and there is no need for treatment  Amphotericin B is the treatment of choice if necessary  It is toxic  Used only for short times and only in severe cases  Itraconazole and ketoconazole are used in patients with AIDS
  • 159. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science COCCIDIOIDOMYCOSIS  Caused by Coccidioides immitis  Infection can be symptomatic or asymptomatic  Symptomatic form known as Valley Fever  Restricted to certain geographical areas
  • 160. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science COCCIDIOIDOMYCOSIS: Pathogenesis  Arthroconidia of the fungus are inhaled  Small enough to bypass defenses of the upper tract  Lodge directly in bronchioles
  • 161. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science COCCIDIOIDOMYCOSIS: Pathogenesis  Fungal outer wall has antiphagocytic properties  Prevents elimination  Arthroconidia convert to spherules which grow slowly  Completely inhibit phagocytosis
  • 162. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science COCCIDIOIDOMYCOSIS: Pathogenesis  More than half of infected individuals show no signs of infection  Remainder progress to valley fever  Present with malaise, cough, chest pain, fever, and arthralgia  All signs occur 1 to 3 weeks after infection begins  Signs can last for up to 6 weeks
  • 163. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science COCCIDIOIDOMYCOSIS: Pathogenesis  Most patients spontaneously resolve  Only 10% ever experience pulmonary symptoms  Disseminated coccidioidomycosis is seen in patients with AIDS and on immunosuppressive therapy  Can also cause a form of coccidioidal meningitis  Can be fatal if not treated aggressively
  • 164. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science COCCIDIOIDOMYCOSIS: Treatment  Usually self-limiting and no treatment is required  Progressive pulmonary infection or infection of central nervous system is treated with amphotericin B  Fluconazole and itraconazole are also effective
  • 165. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science ASPERGILLOSIS  Invasive aspergillosis shows a rapid progression to death  Typically seen in the immunocompromised  Particularly patients with leukemia or AIDS  Patients undergoing bone marrow transplantation  Also seen in individuals with preexisting pulmonary disease  Chronic bronchitis, asthma, and tuberculosis
  • 166. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science ASPERGILLOSIS  Caused by the fungus Aspergillus  Widely distributed and found throughout world  Dispersal is through inhalation of resistant conidia  Seen more and more in nosocomial infections associated with air-conditioning systems
  • 167. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science ASPERGILLOSIS: Pathogenesis  Conidia of Aspergillus are small enough to reach alveoli when inhaled  Infection is rare if the immune system is working properly  Fungus produces extracellular proteases, phospholipases, and toxic metabolites  Their involvement in infection is unknown
  • 168. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science ASPERGILLOSIS: Pathogenesis  Colonization with Aspergillus leads to invasion of tissues  Invasion of lung tissue causes penetration of blood vessels  This causes hemoptysis and/or acute pneumonia
  • 169. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science ASPERGILLOSIS: Pathogenesis  Pneumonia is accompanied by multifocal pulmonary infiltrates and high fever  Prognosis is grave  Mortality for invasive aspergillosis is 100%
  • 170. ISBN: 978-0-8153-6514-3Microbiology: A Clinical Approach, by Tony Srelkauskas © Garland ScienceMicrobiology: A Clinical Approach (2nd Edition) © Garland Science ASPERGILLOSIS: Treatment  Amphotericin B and itraconazole can be used but are usually ineffective