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Biochemistry of Cells
Uses of Organic Molecules
Americans consume
an average of 140
pounds of sugar
per person per
year
Cellulose, found in
plant cell walls, is
the most abundant
organic compound on
Earth
Uses of Organic Molecules
A typical cell in
your body has
about 2 meters
of DNA

A typical cow
produces over
200 pounds of
methane gas
each year
Water
About 60-90 percent
of an organism is
water

Water is used in
most reactions in
the body
Water is called
the universal
solvent
Water Properties
Polarity

Cohesiveness

 Adhesiveness

Surface
Tension
Carbon-based Molecules
Although a cell is
mostly water, the
rest of the cell
consists mostly of
carbon-based
molecules

Organic chemistry
is the study of
carbon compounds
Carbon is a Versatile Atom
It has four electrons
in an outer shell that
holds eight


Carbon can
share its
electrons with
other atoms to
form up to four
covalent bonds
Hydrocarbons

The simplest carbon
compounds …
              Contain only carbon
               & hydrogen atoms
Carbon can use its bonds to::

 Attach to other
 carbons

  Form an
  endless
  diversity of
  carbon
  skeletons
Large Hydrocarbons:
Are the main
molecules in the
gasoline we burn
in our cars

 The hydrocarbons
  of fat molecules
 provide energy for
     our bodies
Shape of Organic Molecules
     Each type of
   organic molecule
     has a unique
  three-dimensional
        shape
    The shape
  determines its
  function in an
     organism
Functional Groups are:
Groups of atoms that give properties to
the compounds to which they attach




 Gained Electrons            Lost Electrons
Common Functional Groups
Giant Molecules - Polymers
Large molecules
are called polymers
Polymers are built
from smaller
molecules called
monomers

 Biologists call
 them
 macromolecules
Examples of Polymers
Proteins

Lipids


Carbohydrates

 Nucleic Acids
Most Macromolecules are Polymers

 Polymers are made by stringing together
 many smaller molecules called monomers



                         Nucleic Acid
                          Monomer
Linking Monomers
Cells link monomers by a process called
condensation or dehydration synthesis
     (removing a molecule of water)

                      Remove
                        H

                 H2O Forms


             Remove OH

   This process joins two sugar monomers
           to make a double sugar
Breaking Down Polymers
Cells break down
macromolecules
by a process
called hydrolysis
(adding a
molecule of
water)


         Water added to split a double sugar
Macromolecules in Organisms

  There are four categories of large
          molecules in cells:
            Carbohydrates
                Lipids
               Proteins

            Nucleic Acids
Carbohydrates
Carbohydrates include:
  Small sugar molecules
     in soft drinks
Long starch molecules
 in pasta and potatoes
Monosaccharides:
Called simple sugars
Include glucose,
fructose, & galactose

Have the same
chemical, but
different structural
formulas
   C6H12O6
Monosaccharides
Glucose is found in
sports drinks
Fructose is found
in fruits
Honey contains
both glucose &
fructose
Galactose is called
“milk sugar”
            -OSE ending means SUGAR
Isomers
Glucose &
fructose are
isomers
because
they’re
structures are
different, but
their chemical
formulas are
the same
Rings
    In aqueous (watery) solutions,
 monosaccharides form ring structures
Cellular Fuel

Monosaccharides
are the main
fuel that cells
use for cellular
work



                   ATP
Disaccharides
A disaccharide is a
double sugar
They’re made by
joining two
monosaccharides
Involves removing
a water molecule
(condensation)
Bond called a GLYCOSIDIC bond
Disaccharides


 Common disaccharides include:
    Sucrose (table sugar)
    Lactose (Milk Sugar)
    Maltose (Grain sugar)
Disaccharides
Sucrose is composed
of glucose + fructose

Maltose is
composed of 2
glucose molecules

 Lactose is made
 of galactose +
 glucose                GLUCOSE
Polysaccharides
Complex
carbohydrates
Composed of many
sugar monomers
linked together
Polymers of
monosaccharide
chains
Examples of Polysaccharides
                             Glucose Monomer


                    Starch




         Glycogen




        Cellulose
Starch
Starch is an example of a
polysaccharide in plants

Plant cells store starch
for energy

 Potatoes and grains are
 major sources of starch
 in the human diet
Glycogen
Glycogen is an example
of a polysaccharide in
animals
Animals store excess
sugar in the form of
glycogen
Glycogen is similar in
structure to starch because
BOTH are made of glucose
monomers
Cellulose
Cellulose is the most abundant organic
compound on Earth
It forms cable-like fibrils in the
tough walls that enclose plants

 It is a major component of
 wood
 It is also known as dietary fiber
Cellulose




      SUGARS
Dietary Cellulose
Most animals cannot derive nutrition
from fiber
They have
bacteria in
their digestive
tracts that can
break down
cellulose
Sugars in Water
Simple sugars and double sugars dissolve
readily in water                 WATER
                                MOLECULE

They are
hydrophilic,
or “water-
loving”

-OH groups
                                  SUGAR
make them                         MOLECULE
water soluble
Lipids
Lipids are hydrophobic –”water fearing”
Do NOT mix with water

Includes
fats,
waxes,
steroids,
& oils

                    FAT MOLECULE
Function of Lipids
Fats store energy, help to insulate the
body, and cushion and protect organs
Types of Fatty Acids
Saturated fatty acids have the
maximum number of hydrogens bonded
to the carbons (all single bonds
between carbons)

Unsaturated fatty acids have less than
the maximum number of hydrogens
bonded to the carbons (a double bond
between carbons)
Types of Fatty Acids



                                      Single
                                      Bonds in
                                      Carbon
                                      chain




        Double bond in carbon chain
Triglyceride

Monomer of lipids

Composed of
Glycerol & 3
fatty acid chains

Glycerol forms
the “backbone”
of the fat
                    Organic Alcohol
                    (-OL ending)
Triglyceride




Glycerol   Fatty Acid Chains
Fats in Organisms
Most animal fats have a high proportion
of saturated fatty acids & exist as
solids at room temperature (butter,
margarine, shortening)
Fats in Organisms
Most plant oils tend to be low in
saturated fatty acids & exist as liquids
at room temperature (oils)
Fats
Dietary fat consists largely of the
molecule triglyceride composed of
glycerol and three fatty acid chains


                      Fatty Acid Chain




Glycerol

   Condensation links the fatty acids to Glycerol
Lipids & Cell Membranes
• Cell membranes are made
  of lipids called
  phospholipids
• Phospholipids have a head
  that is polar & attract
  water (hydrophilic)
• Phospholipids also have 2
  tails that are nonpolar and
  do not attract water
  (hydrophobic)
Steroids
The carbon skeleton
of steroids is bent
to form 4 fused
                                     Cholesterol
rings
Cholesterol is
the “base                              Estrogen
steroid” from         Testosterone

which your body
produces other
steroids
Estrogen & testosterone are also steroids
Synthetic Anabolic Steroids
They are variants
of testosterone
Some athletes use
them to build up
their muscles quickly

They can pose
serious health risks
Proteins
Proteins are polymers made of monomers
called amino acids

All proteins are made of 20 different
amino acids linked in different orders


Proteins are used to build cells, act
as hormones & enzymes, and do much
of the work in a cell
Four Types of Proteins
                          Storage




Structural




 Contractile

                      Transport
20 Amino Acid Monomers
Structure of Amino Acids
                         Amino                     Carboxyl
Amino acids have a       group                      group
central carbon with
4 things boded to                   R group
it:
 Amino group –NH2
Carboxyl group -COOH

 Hydrogen     -H                       Side
                                       groups
 Side group   -R                           Serine-hydrophillic
                    Leucine -hydrophobic
Linking Amino Acids
                         Carboxyl
Cells link amino
acids together to Amino
make proteins         Side
                       Group
The process is
called condensation                    Dehydration
or dehydration                         Synthesis

Peptide bonds
form to hold the
amino acids
together                     Peptide Bond
Proteins as Enzymes
Many proteins act as biological catalysts
or enzymes
Thousands of different enzymes exist
in the body
Enzymes control the rate of chemical
reactions by weakening bonds, thus
lowering the amount of activation
energy needed for the reaction
Primary Protein Structure
The primary
structure is
the specific
sequence of
amino acids in
a protein
Called
polypeptide
         Amino Acid
Protein Structures

Secondary protein structures occur
when protein chains coil or fold
When protein chains called polypeptides
join together, the tertiary structure
forms because R groups interact with
each other
In the watery environment of a cell,
proteins become globular in their
quaternary structure
Protein Structures or CONFORMATIONS


                                                             Hydrogen bond


                                   Pleated sheet
                                                                 Polypeptide
         Amino acid                                              (single subunit)

   (a) Primary structure


         Hydrogen bond


                           Alpha helix

                      (b) Secondary           (c) Tertiary
                      structure               structure



                                                                 (d) Quaternary structure
Denaturating Proteins
  Changes in temperature & pH can
 denature (unfold) a protein so it no
            longer works
Cooking denatures
protein in eggs




                    Milk protein separates into
                    curds & whey when it
                    denatures
Changing Amino Acid Sequence
   Substitution of one amino acid for
 another in hemoglobin causes sickle-cell
                 disease

                                   2                   7. . . 146
                               1       3           6
                                          4   5
      (a) Normal red blood cell        Normal hemoglobin




                                   2                   7. . . 146
                               1       3           6
                                           4    5
      (b) Sickled red blood cell       Sickle-cell hemoglobin
Other Important Proteins

• Blood sugar level is controlled by
  a protein called insulin
• Insulin causes the liver to uptake
  and store excess sugar as
  Glycogen
• The cell membrane also contains
  proteins
• Receptor proteins help cells
  recognize other cells
INSULIN




          Cell membrane with proteins &
                  phospholipids
Nucleic Acids
Store hereditary information
Contain information for making all
the body’s proteins

 Two types exist --- DNA & RNA
Nucleic Acids
                                      Nitrogenous base
                                         (A,G,C, or T)



Nucleic
acids are
polymers of
                      Phosphate              Thymine (T)
                        group

nucleotides
                                    Sugar
                                    (deoxyribose)
                Phosphate


                                   Base
              Sugar

                      Nucleotide
Nucleotide – Nucleic acid monomer
Bases
Each DNA
nucleotide has one
of the following
bases:
                     Thymine (T)     Cytosine (C)
  –Adenine (A)

  –Guanine (G)

  –Thymine (T)

  –Cytosine (C)
                       Adenine (A)       Guanine (G)
Nucleotide Monomers
                          Backbone

Form long chains                Nucleotide
called DNA

Nucleotides are
joined by sugars
& phosphates on
the side
                                     Bases




                   DNA strand
DNA

Two strands of
DNA join
together to form
a double helix     Base
                   pair




                          Double helix
RNA – Ribonucleic Acid
                                        Nitrogenous base
                                           (A,G,C, or U)
Ribose sugar
has an extra
–OH or
hydroxyl
group
                                                 Uracil
                  Phosphate
It has the          group

base uracil (U)
instead of
thymine (T)                   Sugar (ribose)
ATP – Cellular Energy

• ATP is used by cells for energy
• Adenosine triphosphate
• Made of a nucleotide with 3
  phosphate groups
Summary of Key Concepts
Nucleic Acids
Macromolecules
Macromolecules
End

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Biochemistry

  • 2. Uses of Organic Molecules Americans consume an average of 140 pounds of sugar per person per year Cellulose, found in plant cell walls, is the most abundant organic compound on Earth
  • 3. Uses of Organic Molecules A typical cell in your body has about 2 meters of DNA A typical cow produces over 200 pounds of methane gas each year
  • 4. Water About 60-90 percent of an organism is water Water is used in most reactions in the body Water is called the universal solvent
  • 6. Carbon-based Molecules Although a cell is mostly water, the rest of the cell consists mostly of carbon-based molecules Organic chemistry is the study of carbon compounds
  • 7. Carbon is a Versatile Atom It has four electrons in an outer shell that holds eight Carbon can share its electrons with other atoms to form up to four covalent bonds
  • 8. Hydrocarbons The simplest carbon compounds … Contain only carbon & hydrogen atoms
  • 9. Carbon can use its bonds to:: Attach to other carbons Form an endless diversity of carbon skeletons
  • 10. Large Hydrocarbons: Are the main molecules in the gasoline we burn in our cars The hydrocarbons of fat molecules provide energy for our bodies
  • 11. Shape of Organic Molecules Each type of organic molecule has a unique three-dimensional shape The shape determines its function in an organism
  • 12. Functional Groups are: Groups of atoms that give properties to the compounds to which they attach Gained Electrons Lost Electrons
  • 14. Giant Molecules - Polymers Large molecules are called polymers Polymers are built from smaller molecules called monomers Biologists call them macromolecules
  • 16. Most Macromolecules are Polymers Polymers are made by stringing together many smaller molecules called monomers Nucleic Acid Monomer
  • 17. Linking Monomers Cells link monomers by a process called condensation or dehydration synthesis (removing a molecule of water) Remove H H2O Forms Remove OH This process joins two sugar monomers to make a double sugar
  • 18. Breaking Down Polymers Cells break down macromolecules by a process called hydrolysis (adding a molecule of water) Water added to split a double sugar
  • 19. Macromolecules in Organisms There are four categories of large molecules in cells: Carbohydrates Lipids Proteins Nucleic Acids
  • 20. Carbohydrates Carbohydrates include: Small sugar molecules in soft drinks Long starch molecules in pasta and potatoes
  • 21. Monosaccharides: Called simple sugars Include glucose, fructose, & galactose Have the same chemical, but different structural formulas C6H12O6
  • 22. Monosaccharides Glucose is found in sports drinks Fructose is found in fruits Honey contains both glucose & fructose Galactose is called “milk sugar” -OSE ending means SUGAR
  • 23. Isomers Glucose & fructose are isomers because they’re structures are different, but their chemical formulas are the same
  • 24. Rings In aqueous (watery) solutions, monosaccharides form ring structures
  • 25. Cellular Fuel Monosaccharides are the main fuel that cells use for cellular work ATP
  • 26. Disaccharides A disaccharide is a double sugar They’re made by joining two monosaccharides Involves removing a water molecule (condensation) Bond called a GLYCOSIDIC bond
  • 27. Disaccharides Common disaccharides include: Sucrose (table sugar) Lactose (Milk Sugar) Maltose (Grain sugar)
  • 28. Disaccharides Sucrose is composed of glucose + fructose Maltose is composed of 2 glucose molecules Lactose is made of galactose + glucose GLUCOSE
  • 29. Polysaccharides Complex carbohydrates Composed of many sugar monomers linked together Polymers of monosaccharide chains
  • 30. Examples of Polysaccharides Glucose Monomer Starch Glycogen Cellulose
  • 31. Starch Starch is an example of a polysaccharide in plants Plant cells store starch for energy Potatoes and grains are major sources of starch in the human diet
  • 32. Glycogen Glycogen is an example of a polysaccharide in animals Animals store excess sugar in the form of glycogen Glycogen is similar in structure to starch because BOTH are made of glucose monomers
  • 33. Cellulose Cellulose is the most abundant organic compound on Earth It forms cable-like fibrils in the tough walls that enclose plants It is a major component of wood It is also known as dietary fiber
  • 34. Cellulose SUGARS
  • 35. Dietary Cellulose Most animals cannot derive nutrition from fiber They have bacteria in their digestive tracts that can break down cellulose
  • 36. Sugars in Water Simple sugars and double sugars dissolve readily in water WATER MOLECULE They are hydrophilic, or “water- loving” -OH groups SUGAR make them MOLECULE water soluble
  • 37. Lipids Lipids are hydrophobic –”water fearing” Do NOT mix with water Includes fats, waxes, steroids, & oils FAT MOLECULE
  • 38. Function of Lipids Fats store energy, help to insulate the body, and cushion and protect organs
  • 39. Types of Fatty Acids Saturated fatty acids have the maximum number of hydrogens bonded to the carbons (all single bonds between carbons) Unsaturated fatty acids have less than the maximum number of hydrogens bonded to the carbons (a double bond between carbons)
  • 40. Types of Fatty Acids Single Bonds in Carbon chain Double bond in carbon chain
  • 41. Triglyceride Monomer of lipids Composed of Glycerol & 3 fatty acid chains Glycerol forms the “backbone” of the fat Organic Alcohol (-OL ending)
  • 42. Triglyceride Glycerol Fatty Acid Chains
  • 43. Fats in Organisms Most animal fats have a high proportion of saturated fatty acids & exist as solids at room temperature (butter, margarine, shortening)
  • 44. Fats in Organisms Most plant oils tend to be low in saturated fatty acids & exist as liquids at room temperature (oils)
  • 45. Fats Dietary fat consists largely of the molecule triglyceride composed of glycerol and three fatty acid chains Fatty Acid Chain Glycerol Condensation links the fatty acids to Glycerol
  • 46. Lipids & Cell Membranes • Cell membranes are made of lipids called phospholipids • Phospholipids have a head that is polar & attract water (hydrophilic) • Phospholipids also have 2 tails that are nonpolar and do not attract water (hydrophobic)
  • 47. Steroids The carbon skeleton of steroids is bent to form 4 fused Cholesterol rings Cholesterol is the “base Estrogen steroid” from Testosterone which your body produces other steroids Estrogen & testosterone are also steroids
  • 48. Synthetic Anabolic Steroids They are variants of testosterone Some athletes use them to build up their muscles quickly They can pose serious health risks
  • 49. Proteins Proteins are polymers made of monomers called amino acids All proteins are made of 20 different amino acids linked in different orders Proteins are used to build cells, act as hormones & enzymes, and do much of the work in a cell
  • 50. Four Types of Proteins Storage Structural Contractile Transport
  • 51. 20 Amino Acid Monomers
  • 52. Structure of Amino Acids Amino Carboxyl Amino acids have a group group central carbon with 4 things boded to R group it: Amino group –NH2 Carboxyl group -COOH Hydrogen -H Side groups Side group -R Serine-hydrophillic Leucine -hydrophobic
  • 53. Linking Amino Acids Carboxyl Cells link amino acids together to Amino make proteins Side Group The process is called condensation Dehydration or dehydration Synthesis Peptide bonds form to hold the amino acids together Peptide Bond
  • 54. Proteins as Enzymes Many proteins act as biological catalysts or enzymes Thousands of different enzymes exist in the body Enzymes control the rate of chemical reactions by weakening bonds, thus lowering the amount of activation energy needed for the reaction
  • 55. Primary Protein Structure The primary structure is the specific sequence of amino acids in a protein Called polypeptide Amino Acid
  • 56. Protein Structures Secondary protein structures occur when protein chains coil or fold When protein chains called polypeptides join together, the tertiary structure forms because R groups interact with each other In the watery environment of a cell, proteins become globular in their quaternary structure
  • 57. Protein Structures or CONFORMATIONS Hydrogen bond Pleated sheet Polypeptide Amino acid (single subunit) (a) Primary structure Hydrogen bond Alpha helix (b) Secondary (c) Tertiary structure structure (d) Quaternary structure
  • 58. Denaturating Proteins Changes in temperature & pH can denature (unfold) a protein so it no longer works Cooking denatures protein in eggs Milk protein separates into curds & whey when it denatures
  • 59. Changing Amino Acid Sequence Substitution of one amino acid for another in hemoglobin causes sickle-cell disease 2 7. . . 146 1 3 6 4 5 (a) Normal red blood cell Normal hemoglobin 2 7. . . 146 1 3 6 4 5 (b) Sickled red blood cell Sickle-cell hemoglobin
  • 60. Other Important Proteins • Blood sugar level is controlled by a protein called insulin • Insulin causes the liver to uptake and store excess sugar as Glycogen • The cell membrane also contains proteins • Receptor proteins help cells recognize other cells
  • 61. INSULIN Cell membrane with proteins & phospholipids
  • 62. Nucleic Acids Store hereditary information Contain information for making all the body’s proteins Two types exist --- DNA & RNA
  • 63.
  • 64. Nucleic Acids Nitrogenous base (A,G,C, or T) Nucleic acids are polymers of Phosphate Thymine (T) group nucleotides Sugar (deoxyribose) Phosphate Base Sugar Nucleotide
  • 65. Nucleotide – Nucleic acid monomer
  • 66. Bases Each DNA nucleotide has one of the following bases: Thymine (T) Cytosine (C) –Adenine (A) –Guanine (G) –Thymine (T) –Cytosine (C) Adenine (A) Guanine (G)
  • 67. Nucleotide Monomers Backbone Form long chains Nucleotide called DNA Nucleotides are joined by sugars & phosphates on the side Bases DNA strand
  • 68. DNA Two strands of DNA join together to form a double helix Base pair Double helix
  • 69. RNA – Ribonucleic Acid Nitrogenous base (A,G,C, or U) Ribose sugar has an extra –OH or hydroxyl group Uracil Phosphate It has the group base uracil (U) instead of thymine (T) Sugar (ribose)
  • 70. ATP – Cellular Energy • ATP is used by cells for energy • Adenosine triphosphate • Made of a nucleotide with 3 phosphate groups
  • 71. Summary of Key Concepts
  • 75. End