U Florida / Gainesville talk, apr 13 2011

595 views

Published on

Published in: Education
0 Comments
0 Likes
Statistics
Notes
  • Be the first to comment

  • Be the first to like this

No Downloads
Views
Total views
595
On SlideShare
0
From Embeds
0
Number of Embeds
3
Actions
Shares
0
Downloads
7
Comments
0
Likes
0
Embeds 0
No embeds

No notes for slide
  • Expand on this last point
  • Bridge between this kind of view and k-mers
  • Constant memory
  • @@
  • @@
  • @@ k up to 64 graph
  • Expand; talk about density, circumference
  • @@ redo
  • @@ redo
  • Details!
  • 2x coverage vs 10x coverage? Add “reads”
  • For Iowa corn soil sample, doubling depth from 931 GB (~5x) to 1.9 TB (~10x) should yield < 1% novel sequence.For Iowa prairie soil, doubling from 375 GB to 750 Gb reaches about the same point.
  • Sites of imaginative potential – iconic locations – Iconic Sampling – Life is strange – microbes are stranger – how do we capitalizeon this?
  • Funding: MSU startup, USDA NIFA, DOE, BEACON, Amazon.
  • ×