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Search the gene belonging to the accession id you selected in
week 2. Use both Ensembl
https://useast.ensembl.org/index.html
and UCSC
https://genome.ucsc.edu/cgi-bin/hgGateway
genomic browsers to get these genomic/sequence features.
For transcript information including UTRs. provide:
Chromosome
Gene location
Coordinates (exons and introns) these are positions in the
sequence
Total exon count -> state if this was the same as what you
retrieved from NCBI. Note it could be different because it is a
different organism.
ORF Strand: some tools present with signs such as -/+, others
will state positive/negative or forward/reverse
promoter region
Coding Region
Coordinates (start and end sequence positions)
coding exon count (this may differ from the total count).
positions for coding exons
Compare and contrast the level of information provided by the
two genomic browsers against each other and against the
information you were able to get from NCBI resources

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Search the gene belonging to the accession id you selected in week 2.docx

  • 1. Search the gene belonging to the accession id you selected in week 2. Use both Ensembl https://useast.ensembl.org/index.html and UCSC https://genome.ucsc.edu/cgi-bin/hgGateway genomic browsers to get these genomic/sequence features. For transcript information including UTRs. provide: Chromosome Gene location Coordinates (exons and introns) these are positions in the sequence Total exon count -> state if this was the same as what you retrieved from NCBI. Note it could be different because it is a different organism. ORF Strand: some tools present with signs such as -/+, others will state positive/negative or forward/reverse promoter region Coding Region Coordinates (start and end sequence positions) coding exon count (this may differ from the total count).
  • 2. positions for coding exons Compare and contrast the level of information provided by the two genomic browsers against each other and against the information you were able to get from NCBI resources